Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01960

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01950 and CA264_01955 are separated by 111 nucleotidesCA264_01955 and CA264_01960 overlap by 1 nucleotidesCA264_01960 and CA264_01965 are separated by 306 nucleotidesCA264_01965 and CA264_01970 are separated by 295 nucleotides CA264_01950: CA264_01950 - PhoH family protein, at 451,822 to 452,859 _01950 CA264_01955: CA264_01955 - N-acetyltransferase, at 452,971 to 453,399 _01955 CA264_01960: CA264_01960 - competence protein ComEC, at 453,399 to 455,510 _01960 CA264_01965: CA264_01965 - tRNA-Leu, at 455,817 to 455,898 _01965 CA264_01970: CA264_01970 - multidrug ABC transporter ATP-binding protein, at 456,194 to 456,952 _01970 Position (kb) 453 454 455 456Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 452.431 kb on + strand, within CA264_01950at 452.435 kb on - strand, within CA264_01950at 452.473 kb on + strand, within CA264_01950at 452.819 kb on + strandat 452.858 kb on - strandat 452.907 kb on - strandat 452.908 kb on + strandat 452.908 kb on + strandat 452.909 kb on - strandat 452.915 kb on + strandat 452.915 kb on + strandat 452.916 kb on - strandat 452.916 kb on - strandat 452.960 kb on + strandat 452.961 kb on - strandat 452.981 kb on + strandat 453.076 kb on + strand, within CA264_01955at 453.077 kb on - strand, within CA264_01955at 453.106 kb on + strand, within CA264_01955at 453.246 kb on - strand, within CA264_01955at 453.255 kb on - strand, within CA264_01955at 453.309 kb on - strand, within CA264_01955at 453.379 kb on - strandat 453.465 kb on + strandat 453.558 kb on + strandat 453.559 kb on - strandat 453.560 kb on + strandat 453.560 kb on + strandat 453.560 kb on + strandat 453.561 kb on - strandat 453.592 kb on + strandat 453.593 kb on - strandat 453.593 kb on - strandat 453.593 kb on - strandat 453.605 kb on + strandat 453.606 kb on - strandat 453.696 kb on + strand, within CA264_01960at 453.696 kb on + strand, within CA264_01960at 453.696 kb on + strand, within CA264_01960at 453.697 kb on - strand, within CA264_01960at 453.699 kb on + strand, within CA264_01960at 453.699 kb on + strand, within CA264_01960at 453.699 kb on + strand, within CA264_01960at 453.699 kb on + strand, within CA264_01960at 453.699 kb on + strand, within CA264_01960at 453.699 kb on - strand, within CA264_01960at 453.700 kb on - strand, within CA264_01960at 453.700 kb on - strand, within CA264_01960at 453.701 kb on + strand, within CA264_01960at 453.701 kb on + strand, within CA264_01960at 453.702 kb on - strand, within CA264_01960at 453.720 kb on + strand, within CA264_01960at 453.778 kb on + strand, within CA264_01960at 453.812 kb on - strand, within CA264_01960at 453.812 kb on - strand, within CA264_01960at 453.812 kb on - strand, within CA264_01960at 453.859 kb on - strand, within CA264_01960at 453.859 kb on - strand, within CA264_01960at 453.859 kb on - strand, within CA264_01960at 454.028 kb on - strand, within CA264_01960at 454.028 kb on - strand, within CA264_01960at 454.028 kb on - strand, within CA264_01960at 454.028 kb on - strand, within CA264_01960at 454.028 kb on - strand, within CA264_01960at 454.029 kb on + strand, within CA264_01960at 454.030 kb on - strand, within CA264_01960at 454.030 kb on - strand, within CA264_01960at 454.032 kb on + strand, within CA264_01960at 454.098 kb on + strand, within CA264_01960at 454.164 kb on + strand, within CA264_01960at 454.370 kb on + strand, within CA264_01960at 454.371 kb on - strand, within CA264_01960at 454.465 kb on - strand, within CA264_01960at 454.465 kb on - strand, within CA264_01960at 454.466 kb on + strand, within CA264_01960at 454.522 kb on - strand, within CA264_01960at 454.588 kb on - strand, within CA264_01960at 454.641 kb on + strand, within CA264_01960at 454.642 kb on - strand, within CA264_01960at 454.662 kb on + strand, within CA264_01960at 454.740 kb on - strand, within CA264_01960at 454.740 kb on - strand, within CA264_01960at 454.740 kb on - strand, within CA264_01960at 454.794 kb on + strand, within CA264_01960at 454.795 kb on - strand, within CA264_01960at 454.795 kb on - strand, within CA264_01960at 454.795 kb on - strand, within CA264_01960at 454.888 kb on - strand, within CA264_01960at 454.907 kb on + strand, within CA264_01960at 454.999 kb on + strand, within CA264_01960at 455.032 kb on - strand, within CA264_01960at 455.032 kb on - strand, within CA264_01960at 455.054 kb on + strand, within CA264_01960at 455.054 kb on + strand, within CA264_01960at 455.124 kb on + strand, within CA264_01960at 455.132 kb on + strand, within CA264_01960at 455.132 kb on + strand, within CA264_01960at 455.132 kb on + strand, within CA264_01960at 455.275 kb on + strand, within CA264_01960at 455.376 kb on + strandat 455.376 kb on + strandat 455.377 kb on - strandat 455.377 kb on - strandat 455.377 kb on - strandat 455.378 kb on + strandat 455.379 kb on - strandat 455.466 kb on + strandat 455.469 kb on + strandat 455.469 kb on + strandat 455.469 kb on + strandat 455.470 kb on - strandat 455.547 kb on - strandat 455.730 kb on + strandat 455.753 kb on + strandat 455.753 kb on + strandat 455.753 kb on + strandat 455.754 kb on - strandat 455.939 kb on + strandat 455.939 kb on + strandat 455.940 kb on - strandat 455.970 kb on + strandat 455.971 kb on - strandat 455.971 kb on - strandat 455.982 kb on + strandat 455.982 kb on + strandat 456.010 kb on + strandat 456.017 kb on - strandat 456.074 kb on + strandat 456.113 kb on + strandat 456.124 kb on + strandat 456.126 kb on + strandat 456.150 kb on - strandat 456.150 kb on - strandat 456.201 kb on + strandat 456.202 kb on - strandat 456.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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452,431 + CA264_01950 0.59 -0.2
452,435 - CA264_01950 0.59 +0.8
452,473 + CA264_01950 0.63 -0.9
452,819 + +1.6
452,858 - -0.2
452,907 - +0.5
452,908 + -0.3
452,908 + -0.2
452,909 - -0.4
452,915 + -0.4
452,915 + -1.6
452,916 - -0.7
452,916 - -1.2
452,960 + +1.2
452,961 - -0.3
452,981 + -0.8
453,076 + CA264_01955 0.24 -1.2
453,077 - CA264_01955 0.25 +0.7
453,106 + CA264_01955 0.31 -0.6
453,246 - CA264_01955 0.64 -3.1
453,255 - CA264_01955 0.66 -0.1
453,309 - CA264_01955 0.79 -0.6
453,379 - +0.3
453,465 + -0.1
453,558 + +1.0
453,559 - -0.3
453,560 + +0.9
453,560 + +2.3
453,560 + +0.7
453,561 - -0.4
453,592 + -1.4
453,593 - +2.1
453,593 - -0.3
453,593 - -0.0
453,605 + +0.3
453,606 - -0.5
453,696 + CA264_01960 0.14 -0.4
453,696 + CA264_01960 0.14 -0.3
453,696 + CA264_01960 0.14 -1.7
453,697 - CA264_01960 0.14 +0.8
453,699 + CA264_01960 0.14 -0.4
453,699 + CA264_01960 0.14 -0.7
453,699 + CA264_01960 0.14 +1.1
453,699 + CA264_01960 0.14 +1.6
453,699 + CA264_01960 0.14 +0.2
453,699 - CA264_01960 0.14 -1.3
453,700 - CA264_01960 0.14 +1.1
453,700 - CA264_01960 0.14 -0.7
453,701 + CA264_01960 0.14 +0.7
453,701 + CA264_01960 0.14 -2.2
453,702 - CA264_01960 0.14 -0.7
453,720 + CA264_01960 0.15 +0.6
453,778 + CA264_01960 0.18 +0.6
453,812 - CA264_01960 0.20 -0.2
453,812 - CA264_01960 0.20 +2.6
453,812 - CA264_01960 0.20 -0.4
453,859 - CA264_01960 0.22 -2.1
453,859 - CA264_01960 0.22 +1.1
453,859 - CA264_01960 0.22 +2.6
454,028 - CA264_01960 0.30 -0.6
454,028 - CA264_01960 0.30 +0.2
454,028 - CA264_01960 0.30 -1.8
454,028 - CA264_01960 0.30 -1.6
454,028 - CA264_01960 0.30 -0.7
454,029 + CA264_01960 0.30 -2.6
454,030 - CA264_01960 0.30 -1.6
454,030 - CA264_01960 0.30 +0.3
454,032 + CA264_01960 0.30 +0.8
454,098 + CA264_01960 0.33 -0.7
454,164 + CA264_01960 0.36 +1.3
454,370 + CA264_01960 0.46 -0.4
454,371 - CA264_01960 0.46 +0.1
454,465 - CA264_01960 0.50 -0.1
454,465 - CA264_01960 0.50 -1.1
454,466 + CA264_01960 0.51 +0.2
454,522 - CA264_01960 0.53 -1.4
454,588 - CA264_01960 0.56 -1.8
454,641 + CA264_01960 0.59 +1.0
454,642 - CA264_01960 0.59 -0.3
454,662 + CA264_01960 0.60 -0.1
454,740 - CA264_01960 0.63 -0.8
454,740 - CA264_01960 0.63 +1.0
454,740 - CA264_01960 0.63 +1.8
454,794 + CA264_01960 0.66 -2.0
454,795 - CA264_01960 0.66 -2.0
454,795 - CA264_01960 0.66 +0.7
454,795 - CA264_01960 0.66 -0.5
454,888 - CA264_01960 0.71 -0.3
454,907 + CA264_01960 0.71 +0.4
454,999 + CA264_01960 0.76 -0.8
455,032 - CA264_01960 0.77 +1.0
455,032 - CA264_01960 0.77 -0.2
455,054 + CA264_01960 0.78 +3.4
455,054 + CA264_01960 0.78 +0.9
455,124 + CA264_01960 0.82 -1.7
455,132 + CA264_01960 0.82 -0.3
455,132 + CA264_01960 0.82 -0.2
455,132 + CA264_01960 0.82 -0.2
455,275 + CA264_01960 0.89 -0.9
455,376 + -1.8
455,376 + +0.3
455,377 - +2.0
455,377 - +0.1
455,377 - +2.2
455,378 + -1.7
455,379 - +2.0
455,466 + -1.2
455,469 + -1.5
455,469 + -0.6
455,469 + -0.6
455,470 - -0.9
455,547 - -0.9
455,730 + -0.9
455,753 + +0.8
455,753 + -1.2
455,753 + -1.2
455,754 - +2.5
455,939 + -0.7
455,939 + +0.9
455,940 - +0.8
455,970 + -0.1
455,971 - +1.2
455,971 - +0.3
455,982 + -1.1
455,982 + -1.7
456,010 + -0.1
456,017 - -0.5
456,074 + -0.7
456,113 + +5.4
456,124 + -2.6
456,126 + -0.0
456,150 - -0.4
456,150 - -0.1
456,201 + +2.7
456,202 - -1.6
456,208 - +0.6

Or see this region's nucleotide sequence