Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00045

Experiment: m.b. Cisplatin 0.035 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00040 and CA264_00045 are separated by 215 nucleotidesCA264_00045 and CA264_00050 are separated by 221 nucleotides CA264_00040: CA264_00040 - hypothetical protein, at 9,050 to 11,023 _00040 CA264_00045: CA264_00045 - endopeptidase La, at 11,239 to 13,728 _00045 CA264_00050: CA264_00050 - hypothetical protein, at 13,950 to 14,993 _00050 Position (kb) 11 12 13 14Strain fitness (log2 ratio) -2 -1 0 1 2at 10.282 kb on - strand, within CA264_00040at 10.282 kb on - strand, within CA264_00040at 10.295 kb on - strand, within CA264_00040at 10.377 kb on - strand, within CA264_00040at 10.377 kb on - strand, within CA264_00040at 10.405 kb on - strand, within CA264_00040at 10.486 kb on - strand, within CA264_00040at 10.543 kb on - strand, within CA264_00040at 10.543 kb on - strand, within CA264_00040at 10.546 kb on - strand, within CA264_00040at 10.546 kb on - strand, within CA264_00040at 10.546 kb on - strand, within CA264_00040at 10.564 kb on - strand, within CA264_00040at 10.566 kb on + strand, within CA264_00040at 10.567 kb on - strand, within CA264_00040at 10.759 kb on - strand, within CA264_00040at 10.789 kb on - strand, within CA264_00040at 10.899 kb on - strandat 10.934 kb on - strandat 11.171 kb on + strandat 11.176 kb on - strandat 11.176 kb on - strandat 11.176 kb on - strandat 11.177 kb on + strandat 11.178 kb on - strandat 11.183 kb on + strandat 11.184 kb on - strandat 11.184 kb on - strandat 11.184 kb on - strandat 11.185 kb on + strandat 11.185 kb on + strandat 11.235 kb on - strandat 11.235 kb on - strandat 11.239 kb on - strandat 11.307 kb on - strandat 11.314 kb on - strandat 11.346 kb on + strandat 11.347 kb on - strandat 11.348 kb on + strandat 11.549 kb on - strand, within CA264_00045at 11.652 kb on - strand, within CA264_00045at 11.751 kb on + strand, within CA264_00045at 11.929 kb on - strand, within CA264_00045at 12.050 kb on + strand, within CA264_00045at 12.099 kb on - strand, within CA264_00045at 12.175 kb on - strand, within CA264_00045at 12.175 kb on - strand, within CA264_00045at 12.227 kb on - strand, within CA264_00045at 12.274 kb on - strand, within CA264_00045at 12.451 kb on - strand, within CA264_00045at 12.608 kb on + strand, within CA264_00045at 12.624 kb on + strand, within CA264_00045at 12.709 kb on - strand, within CA264_00045at 12.712 kb on + strand, within CA264_00045at 12.712 kb on + strand, within CA264_00045at 12.713 kb on - strand, within CA264_00045at 12.728 kb on - strand, within CA264_00045at 12.750 kb on + strand, within CA264_00045at 12.751 kb on - strand, within CA264_00045at 12.751 kb on - strand, within CA264_00045at 12.801 kb on + strand, within CA264_00045at 12.827 kb on - strand, within CA264_00045at 12.937 kb on - strand, within CA264_00045at 12.953 kb on - strand, within CA264_00045at 12.953 kb on - strand, within CA264_00045at 13.139 kb on + strand, within CA264_00045at 13.193 kb on + strand, within CA264_00045at 13.194 kb on - strand, within CA264_00045at 13.611 kb on + strandat 13.625 kb on + strandat 13.759 kb on + strandat 13.760 kb on - strandat 13.849 kb on - strandat 13.849 kb on - strandat 13.857 kb on + strandat 13.857 kb on + strandat 13.919 kb on - strandat 13.930 kb on + strandat 13.930 kb on + strandat 13.936 kb on + strandat 13.936 kb on + strandat 13.967 kb on + strandat 13.970 kb on - strandat 13.970 kb on - strandat 13.973 kb on + strandat 13.973 kb on + strandat 13.997 kb on + strandat 14.119 kb on + strand, within CA264_00050at 14.120 kb on - strand, within CA264_00050at 14.176 kb on - strand, within CA264_00050at 14.176 kb on - strand, within CA264_00050at 14.176 kb on - strand, within CA264_00050at 14.185 kb on - strand, within CA264_00050at 14.258 kb on + strand, within CA264_00050at 14.258 kb on + strand, within CA264_00050at 14.260 kb on + strand, within CA264_00050at 14.261 kb on - strand, within CA264_00050at 14.265 kb on + strand, within CA264_00050at 14.266 kb on - strand, within CA264_00050at 14.318 kb on + strand, within CA264_00050at 14.435 kb on - strand, within CA264_00050at 14.441 kb on - strand, within CA264_00050at 14.466 kb on - strand, within CA264_00050at 14.504 kb on + strand, within CA264_00050at 14.517 kb on + strand, within CA264_00050at 14.525 kb on - strand, within CA264_00050at 14.533 kb on - strand, within CA264_00050

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.035 mg/ml
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10,282 - CA264_00040 0.62 -1.8
10,282 - CA264_00040 0.62 +0.8
10,295 - CA264_00040 0.63 +0.7
10,377 - CA264_00040 0.67 +1.0
10,377 - CA264_00040 0.67 -0.7
10,405 - CA264_00040 0.69 -0.6
10,486 - CA264_00040 0.73 -0.7
10,543 - CA264_00040 0.76 +0.5
10,543 - CA264_00040 0.76 -0.4
10,546 - CA264_00040 0.76 -0.7
10,546 - CA264_00040 0.76 -1.0
10,546 - CA264_00040 0.76 +0.5
10,564 - CA264_00040 0.77 -2.6
10,566 + CA264_00040 0.77 +1.8
10,567 - CA264_00040 0.77 +0.9
10,759 - CA264_00040 0.87 -0.8
10,789 - CA264_00040 0.88 +0.6
10,899 - +0.1
10,934 - -1.2
11,171 + +0.5
11,176 - -2.4
11,176 - -0.8
11,176 - +0.3
11,177 + -0.1
11,178 - +2.2
11,183 + -0.6
11,184 - -0.0
11,184 - +0.8
11,184 - +1.4
11,185 + -1.7
11,185 + -0.1
11,235 - -0.5
11,235 - +0.5
11,239 - -0.6
11,307 - -0.4
11,314 - +0.4
11,346 + -0.6
11,347 - -1.2
11,348 + +1.0
11,549 - CA264_00045 0.12 +1.6
11,652 - CA264_00045 0.17 +1.0
11,751 + CA264_00045 0.21 -1.0
11,929 - CA264_00045 0.28 +0.8
12,050 + CA264_00045 0.33 -0.1
12,099 - CA264_00045 0.35 +1.4
12,175 - CA264_00045 0.38 +0.3
12,175 - CA264_00045 0.38 +0.2
12,227 - CA264_00045 0.40 +1.8
12,274 - CA264_00045 0.42 +1.1
12,451 - CA264_00045 0.49 +0.6
12,608 + CA264_00045 0.55 +0.3
12,624 + CA264_00045 0.56 +1.2
12,709 - CA264_00045 0.59 +1.5
12,712 + CA264_00045 0.59 +1.0
12,712 + CA264_00045 0.59 +1.9
12,713 - CA264_00045 0.59 -1.0
12,728 - CA264_00045 0.60 -1.3
12,750 + CA264_00045 0.61 -0.8
12,751 - CA264_00045 0.61 -0.4
12,751 - CA264_00045 0.61 +0.8
12,801 + CA264_00045 0.63 +0.3
12,827 - CA264_00045 0.64 +0.1
12,937 - CA264_00045 0.68 +0.6
12,953 - CA264_00045 0.69 -1.6
12,953 - CA264_00045 0.69 +0.3
13,139 + CA264_00045 0.76 +1.6
13,193 + CA264_00045 0.78 +0.3
13,194 - CA264_00045 0.79 +1.5
13,611 + +0.5
13,625 + +1.3
13,759 + -2.2
13,760 - -0.4
13,849 - -1.2
13,849 - +1.5
13,857 + -1.1
13,857 + -0.1
13,919 - +0.5
13,930 + +0.5
13,930 + +0.0
13,936 + +0.3
13,936 + -0.1
13,967 + -0.3
13,970 - +0.2
13,970 - +2.6
13,973 + +0.8
13,973 + +1.8
13,997 + +0.1
14,119 + CA264_00050 0.16 -0.1
14,120 - CA264_00050 0.16 +1.6
14,176 - CA264_00050 0.22 -1.9
14,176 - CA264_00050 0.22 +0.3
14,176 - CA264_00050 0.22 -0.5
14,185 - CA264_00050 0.23 -0.1
14,258 + CA264_00050 0.30 -0.5
14,258 + CA264_00050 0.30 -0.2
14,260 + CA264_00050 0.30 -1.0
14,261 - CA264_00050 0.30 +1.1
14,265 + CA264_00050 0.30 +1.8
14,266 - CA264_00050 0.30 +0.2
14,318 + CA264_00050 0.35 -0.2
14,435 - CA264_00050 0.46 -0.5
14,441 - CA264_00050 0.47 -0.7
14,466 - CA264_00050 0.49 -0.3
14,504 + CA264_00050 0.53 -0.5
14,517 + CA264_00050 0.54 +0.7
14,525 - CA264_00050 0.55 -0.4
14,533 - CA264_00050 0.56 +0.4

Or see this region's nucleotide sequence