Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18190 and ABIE41_RS18195 are separated by 247 nucleotides ABIE41_RS18195 and ABIE41_RS18200 overlap by 1 nucleotides ABIE41_RS18200 and ABIE41_RS18205 overlap by 4 nucleotides
ABIE41_RS18190: ABIE41_RS18190 - cell envelope integrity EipB family protein, at 3,745,738 to 3,746,574
_RS18190
ABIE41_RS18195: ABIE41_RS18195 - RidA family protein, at 3,746,822 to 3,747,295
_RS18195
ABIE41_RS18200: ABIE41_RS18200 - glycerophosphodiester phosphodiesterase family protein, at 3,747,295 to 3,748,074
_RS18200
ABIE41_RS18205: ABIE41_RS18205 - GNAT family N-acetyltransferase, at 3,748,071 to 3,749,282
_RS18205
Position (kb)
3746
3747
3748 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3745.844 kb on + strand, within ABIE41_RS18190 at 3745.845 kb on - strand, within ABIE41_RS18190 at 3745.866 kb on - strand, within ABIE41_RS18190 at 3745.866 kb on - strand, within ABIE41_RS18190 at 3745.901 kb on + strand, within ABIE41_RS18190 at 3746.039 kb on + strand, within ABIE41_RS18190 at 3746.039 kb on + strand, within ABIE41_RS18190 at 3746.040 kb on - strand, within ABIE41_RS18190 at 3746.040 kb on - strand, within ABIE41_RS18190 at 3746.357 kb on + strand, within ABIE41_RS18190 at 3746.357 kb on + strand, within ABIE41_RS18190 at 3746.453 kb on + strand, within ABIE41_RS18190 at 3746.453 kb on + strand, within ABIE41_RS18190 at 3746.453 kb on + strand, within ABIE41_RS18190 at 3746.453 kb on + strand, within ABIE41_RS18190 at 3746.453 kb on + strand, within ABIE41_RS18190 at 3746.454 kb on - strand, within ABIE41_RS18190 at 3746.611 kb on - strand at 3746.894 kb on + strand, within ABIE41_RS18195 at 3746.894 kb on + strand, within ABIE41_RS18195 at 3746.895 kb on - strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.903 kb on + strand, within ABIE41_RS18195 at 3746.904 kb on - strand, within ABIE41_RS18195 at 3747.826 kb on + strand, within ABIE41_RS18200 at 3747.826 kb on + strand, within ABIE41_RS18200 at 3747.826 kb on + strand, within ABIE41_RS18200 at 3747.827 kb on - strand, within ABIE41_RS18200 at 3747.833 kb on - strand, within ABIE41_RS18200 at 3748.284 kb on + strand, within ABIE41_RS18205
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 3,745,844 + ABIE41_RS18190 0.13 +0.2 3,745,845 - ABIE41_RS18190 0.13 -0.2 3,745,866 - ABIE41_RS18190 0.15 +0.8 3,745,866 - ABIE41_RS18190 0.15 +0.4 3,745,901 + ABIE41_RS18190 0.19 -2.3 3,746,039 + ABIE41_RS18190 0.36 -0.5 3,746,039 + ABIE41_RS18190 0.36 +1.9 3,746,040 - ABIE41_RS18190 0.36 +0.1 3,746,040 - ABIE41_RS18190 0.36 +0.8 3,746,357 + ABIE41_RS18190 0.74 +0.4 3,746,357 + ABIE41_RS18190 0.74 +1.6 3,746,453 + ABIE41_RS18190 0.85 +1.9 3,746,453 + ABIE41_RS18190 0.85 -0.3 3,746,453 + ABIE41_RS18190 0.85 +0.5 3,746,453 + ABIE41_RS18190 0.85 +0.8 3,746,453 + ABIE41_RS18190 0.85 +0.2 3,746,454 - ABIE41_RS18190 0.86 +1.1 3,746,611 - +2.2 3,746,894 + ABIE41_RS18195 0.15 -1.0 3,746,894 + ABIE41_RS18195 0.15 -0.1 3,746,895 - ABIE41_RS18195 0.15 -0.3 3,746,903 + ABIE41_RS18195 0.17 +2.6 3,746,903 + ABIE41_RS18195 0.17 +0.0 3,746,903 + ABIE41_RS18195 0.17 -0.6 3,746,903 + ABIE41_RS18195 0.17 -0.4 3,746,903 + ABIE41_RS18195 0.17 -0.0 3,746,903 + ABIE41_RS18195 0.17 -1.0 3,746,903 + ABIE41_RS18195 0.17 +0.4 3,746,903 + ABIE41_RS18195 0.17 +1.3 3,746,904 - ABIE41_RS18195 0.17 -0.4 3,747,826 + ABIE41_RS18200 0.68 +0.8 3,747,826 + ABIE41_RS18200 0.68 -0.5 3,747,826 + ABIE41_RS18200 0.68 -0.3 3,747,827 - ABIE41_RS18200 0.68 +0.3 3,747,833 - ABIE41_RS18200 0.69 +1.6 3,748,284 + ABIE41_RS18205 0.18 -3.3
Or see this region's nucleotide sequence