Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS17280 and ABIE41_RS17285 overlap by 4 nucleotides ABIE41_RS17285 and ABIE41_RS17290 are separated by 1 nucleotides ABIE41_RS17290 and ABIE41_RS17295 are separated by 19 nucleotides
ABIE41_RS17280: ABIE41_RS17280 - MarR family transcriptional regulator, at 3,561,026 to 3,561,583
_RS17280
ABIE41_RS17285: ABIE41_RS17285 - enoyl-CoA hydratase family protein, at 3,561,580 to 3,562,416
_RS17285
ABIE41_RS17290: ABIE41_RS17290 - acyl-CoA dehydrogenase family protein, at 3,562,418 to 3,563,620
_RS17290
ABIE41_RS17295: ABIE41_RS17295 - benzoate-CoA ligase family protein, at 3,563,640 to 3,565,271
_RS17295
Position (kb)
3562
3563
3564 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3562.120 kb on + strand, within ABIE41_RS17285 at 3562.120 kb on + strand, within ABIE41_RS17285 at 3562.121 kb on - strand, within ABIE41_RS17285 at 3562.369 kb on + strand at 3562.370 kb on - strand at 3562.643 kb on + strand, within ABIE41_RS17290 at 3562.643 kb on + strand, within ABIE41_RS17290 at 3562.798 kb on + strand, within ABIE41_RS17290 at 3562.970 kb on + strand, within ABIE41_RS17290 at 3562.970 kb on + strand, within ABIE41_RS17290 at 3562.970 kb on + strand, within ABIE41_RS17290 at 3562.970 kb on + strand, within ABIE41_RS17290 at 3562.971 kb on - strand, within ABIE41_RS17290 at 3562.971 kb on - strand, within ABIE41_RS17290 at 3562.971 kb on - strand, within ABIE41_RS17290 at 3562.971 kb on - strand, within ABIE41_RS17290 at 3562.971 kb on - strand, within ABIE41_RS17290 at 3563.555 kb on + strand at 3563.555 kb on + strand at 3563.555 kb on + strand at 3563.556 kb on - strand at 3563.556 kb on - strand at 3563.663 kb on + strand at 3563.742 kb on + strand at 3563.743 kb on - strand at 3563.743 kb on - strand at 3563.844 kb on + strand, within ABIE41_RS17295 at 3563.844 kb on + strand, within ABIE41_RS17295 at 3563.844 kb on + strand, within ABIE41_RS17295 at 3563.845 kb on - strand, within ABIE41_RS17295 at 3563.845 kb on - strand, within ABIE41_RS17295 at 3563.964 kb on + strand, within ABIE41_RS17295 at 3564.037 kb on - strand, within ABIE41_RS17295 at 3564.192 kb on + strand, within ABIE41_RS17295 at 3564.193 kb on - strand, within ABIE41_RS17295 at 3564.193 kb on - strand, within ABIE41_RS17295 at 3564.322 kb on - strand, within ABIE41_RS17295 at 3564.322 kb on - strand, within ABIE41_RS17295 at 3564.528 kb on + strand, within ABIE41_RS17295
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 3,562,120 + ABIE41_RS17285 0.65 -2.8 3,562,120 + ABIE41_RS17285 0.65 -2.2 3,562,121 - ABIE41_RS17285 0.65 -0.6 3,562,369 + -0.7 3,562,370 - -1.2 3,562,643 + ABIE41_RS17290 0.19 -0.2 3,562,643 + ABIE41_RS17290 0.19 +0.4 3,562,798 + ABIE41_RS17290 0.32 +0.6 3,562,970 + ABIE41_RS17290 0.46 -0.7 3,562,970 + ABIE41_RS17290 0.46 +0.3 3,562,970 + ABIE41_RS17290 0.46 +1.3 3,562,970 + ABIE41_RS17290 0.46 -1.1 3,562,971 - ABIE41_RS17290 0.46 -1.0 3,562,971 - ABIE41_RS17290 0.46 +0.7 3,562,971 - ABIE41_RS17290 0.46 +0.3 3,562,971 - ABIE41_RS17290 0.46 -1.6 3,562,971 - ABIE41_RS17290 0.46 +0.0 3,563,555 + -1.4 3,563,555 + +0.7 3,563,555 + +1.2 3,563,556 - +0.0 3,563,556 - +0.4 3,563,663 + +0.6 3,563,742 + -2.5 3,563,743 - +0.9 3,563,743 - -1.7 3,563,844 + ABIE41_RS17295 0.12 -0.3 3,563,844 + ABIE41_RS17295 0.12 -0.0 3,563,844 + ABIE41_RS17295 0.12 -0.1 3,563,845 - ABIE41_RS17295 0.13 +0.1 3,563,845 - ABIE41_RS17295 0.13 -0.4 3,563,964 + ABIE41_RS17295 0.20 -0.3 3,564,037 - ABIE41_RS17295 0.24 +0.2 3,564,192 + ABIE41_RS17295 0.34 -1.0 3,564,193 - ABIE41_RS17295 0.34 -0.9 3,564,193 - ABIE41_RS17295 0.34 +0.1 3,564,322 - ABIE41_RS17295 0.42 +0.2 3,564,322 - ABIE41_RS17295 0.42 -2.6 3,564,528 + ABIE41_RS17295 0.54 +0.0
Or see this region's nucleotide sequence