Strain Fitness in Bosea sp. OAE506 around ABIE41_RS16895

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS16885 and ABIE41_RS16890 are separated by 303 nucleotidesABIE41_RS16890 and ABIE41_RS16895 are separated by 93 nucleotidesABIE41_RS16895 and ABIE41_RS16900 are separated by 219 nucleotides ABIE41_RS16885: ABIE41_RS16885 - NAD(P)H-hydrate dehydratase, at 3,478,365 to 3,479,870 _RS16885 ABIE41_RS16890: ABIE41_RS16890 - P-II family nitrogen regulator, at 3,480,174 to 3,480,512 _RS16890 ABIE41_RS16895: ABIE41_RS16895 - type I glutamate--ammonia ligase, at 3,480,606 to 3,482,015 _RS16895 ABIE41_RS16900: ABIE41_RS16900 - glycosyltransferase family 1 protein, at 3,482,235 to 3,483,332 _RS16900 Position (kb) 3480 3481 3482 3483Strain fitness (log2 ratio) -3 -2 -1 0 1at 3479.622 kb on + strand, within ABIE41_RS16885at 3479.951 kb on + strandat 3480.030 kb on + strandat 3480.553 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strandat 3480.590 kb on + strandat 3482.010 kb on + strandat 3482.010 kb on + strandat 3482.010 kb on + strandat 3482.182 kb on - strandat 3482.814 kb on + strand, within ABIE41_RS16900at 3482.814 kb on + strand, within ABIE41_RS16900at 3482.814 kb on + strand, within ABIE41_RS16900at 3482.814 kb on + strand, within ABIE41_RS16900at 3482.814 kb on + strand, within ABIE41_RS16900at 3482.815 kb on - strand, within ABIE41_RS16900at 3482.815 kb on - strand, within ABIE41_RS16900at 3482.815 kb on - strand, within ABIE41_RS16900at 3482.815 kb on - strand, within ABIE41_RS16900at 3482.815 kb on - strand, within ABIE41_RS16900at 3482.821 kb on + strand, within ABIE41_RS16900at 3482.821 kb on + strand, within ABIE41_RS16900at 3482.822 kb on - strand, within ABIE41_RS16900

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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3,479,622 + ABIE41_RS16885 0.83 -0.3
3,479,951 + +0.7
3,480,030 + -0.5
3,480,553 + -1.2
3,480,590 + -1.2
3,480,590 + -1.0
3,480,590 + -0.4
3,480,590 + +1.2
3,480,590 + -0.3
3,482,010 + -0.3
3,482,010 + -0.4
3,482,010 + +0.6
3,482,182 - +0.8
3,482,814 + ABIE41_RS16900 0.53 -0.4
3,482,814 + ABIE41_RS16900 0.53 +0.3
3,482,814 + ABIE41_RS16900 0.53 +0.0
3,482,814 + ABIE41_RS16900 0.53 -0.1
3,482,814 + ABIE41_RS16900 0.53 -2.2
3,482,815 - ABIE41_RS16900 0.53 -0.2
3,482,815 - ABIE41_RS16900 0.53 +0.6
3,482,815 - ABIE41_RS16900 0.53 -0.3
3,482,815 - ABIE41_RS16900 0.53 -3.3
3,482,815 - ABIE41_RS16900 0.53 +0.0
3,482,821 + ABIE41_RS16900 0.53 +0.0
3,482,821 + ABIE41_RS16900 0.53 +0.2
3,482,822 - ABIE41_RS16900 0.53 -0.1

Or see this region's nucleotide sequence