Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08515

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08505 and ABIE41_RS08510 are separated by 6 nucleotidesABIE41_RS08510 and ABIE41_RS08515 are separated by 43 nucleotidesABIE41_RS08515 and ABIE41_RS08520 are separated by 489 nucleotidesABIE41_RS08520 and ABIE41_RS08525 are separated by 149 nucleotides ABIE41_RS08505: ABIE41_RS08505 - phospholipase D-like domain-containing protein, at 1,755,036 to 1,756,316 _RS08505 ABIE41_RS08510: ABIE41_RS08510 - DUF3606 domain-containing protein, at 1,756,323 to 1,756,520 _RS08510 ABIE41_RS08515: ABIE41_RS08515 - MATE family efflux transporter, at 1,756,564 to 1,757,949 _RS08515 ABIE41_RS08520: ABIE41_RS08520 - tRNA-Val, at 1,758,439 to 1,758,513 _RS08520 ABIE41_RS08525: ABIE41_RS08525 - cell cycle two-component system response regulator CpdR, at 1,758,663 to 1,759,022 _RS08525 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -2 -1 0 1 2at 1755.880 kb on - strand, within ABIE41_RS08505at 1755.880 kb on - strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.062 kb on + strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.063 kb on - strand, within ABIE41_RS08505at 1756.119 kb on - strand, within ABIE41_RS08505at 1756.119 kb on - strand, within ABIE41_RS08505at 1756.314 kb on + strandat 1756.314 kb on + strandat 1756.314 kb on + strandat 1756.314 kb on + strandat 1756.315 kb on - strandat 1756.324 kb on + strandat 1756.757 kb on + strand, within ABIE41_RS08515at 1756.758 kb on - strand, within ABIE41_RS08515at 1756.765 kb on - strand, within ABIE41_RS08515at 1756.765 kb on - strand, within ABIE41_RS08515at 1756.944 kb on + strand, within ABIE41_RS08515at 1756.944 kb on + strand, within ABIE41_RS08515at 1756.945 kb on - strand, within ABIE41_RS08515at 1757.510 kb on + strand, within ABIE41_RS08515at 1757.510 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.552 kb on + strand, within ABIE41_RS08515at 1757.553 kb on - strand, within ABIE41_RS08515at 1757.553 kb on - strand, within ABIE41_RS08515at 1757.553 kb on - strand, within ABIE41_RS08515at 1757.553 kb on - strand, within ABIE41_RS08515at 1757.783 kb on + strand, within ABIE41_RS08515at 1757.784 kb on - strand, within ABIE41_RS08515at 1757.784 kb on - strand, within ABIE41_RS08515at 1757.784 kb on - strand, within ABIE41_RS08515at 1757.784 kb on - strand, within ABIE41_RS08515at 1757.997 kb on - strandat 1757.997 kb on - strandat 1758.322 kb on - strandat 1758.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,755,880 - ABIE41_RS08505 0.66 +2.3
1,755,880 - ABIE41_RS08505 0.66 -0.1
1,756,062 + ABIE41_RS08505 0.80 +0.0
1,756,062 + ABIE41_RS08505 0.80 +1.1
1,756,062 + ABIE41_RS08505 0.80 +0.8
1,756,062 + ABIE41_RS08505 0.80 -0.8
1,756,062 + ABIE41_RS08505 0.80 +1.4
1,756,062 + ABIE41_RS08505 0.80 +1.1
1,756,062 + ABIE41_RS08505 0.80 -0.5
1,756,062 + ABIE41_RS08505 0.80 -0.2
1,756,062 + ABIE41_RS08505 0.80 +0.4
1,756,062 + ABIE41_RS08505 0.80 -0.9
1,756,062 + ABIE41_RS08505 0.80 +0.8
1,756,062 + ABIE41_RS08505 0.80 -0.4
1,756,062 + ABIE41_RS08505 0.80 +0.0
1,756,063 - ABIE41_RS08505 0.80 -0.0
1,756,063 - ABIE41_RS08505 0.80 +0.4
1,756,063 - ABIE41_RS08505 0.80 -0.7
1,756,063 - ABIE41_RS08505 0.80 +1.4
1,756,063 - ABIE41_RS08505 0.80 -0.3
1,756,063 - ABIE41_RS08505 0.80 +0.7
1,756,063 - ABIE41_RS08505 0.80 +0.2
1,756,063 - ABIE41_RS08505 0.80 +1.0
1,756,063 - ABIE41_RS08505 0.80 +1.2
1,756,119 - ABIE41_RS08505 0.85 +1.0
1,756,119 - ABIE41_RS08505 0.85 +0.8
1,756,314 + +0.6
1,756,314 + -0.4
1,756,314 + -0.6
1,756,314 + -0.3
1,756,315 - -0.7
1,756,324 + +0.7
1,756,757 + ABIE41_RS08515 0.14 +0.6
1,756,758 - ABIE41_RS08515 0.14 +1.3
1,756,765 - ABIE41_RS08515 0.15 +1.7
1,756,765 - ABIE41_RS08515 0.15 -0.7
1,756,944 + ABIE41_RS08515 0.27 -0.1
1,756,944 + ABIE41_RS08515 0.27 -0.9
1,756,945 - ABIE41_RS08515 0.27 -0.3
1,757,510 + ABIE41_RS08515 0.68 -1.1
1,757,510 + ABIE41_RS08515 0.68 -0.6
1,757,552 + ABIE41_RS08515 0.71 -0.9
1,757,552 + ABIE41_RS08515 0.71 -1.1
1,757,552 + ABIE41_RS08515 0.71 -2.7
1,757,552 + ABIE41_RS08515 0.71 -0.1
1,757,552 + ABIE41_RS08515 0.71 -0.1
1,757,552 + ABIE41_RS08515 0.71 +0.0
1,757,552 + ABIE41_RS08515 0.71 +0.4
1,757,552 + ABIE41_RS08515 0.71 +1.6
1,757,553 - ABIE41_RS08515 0.71 -1.1
1,757,553 - ABIE41_RS08515 0.71 +0.6
1,757,553 - ABIE41_RS08515 0.71 +1.7
1,757,553 - ABIE41_RS08515 0.71 +1.7
1,757,783 + ABIE41_RS08515 0.88 +0.6
1,757,784 - ABIE41_RS08515 0.88 +0.1
1,757,784 - ABIE41_RS08515 0.88 +1.7
1,757,784 - ABIE41_RS08515 0.88 -0.7
1,757,784 - ABIE41_RS08515 0.88 -0.6
1,757,997 - -0.7
1,757,997 - -0.6
1,758,322 - +1.7
1,758,595 - -0.3

Or see this region's nucleotide sequence