Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS04010 and ABIE41_RS04015 are separated by 67 nucleotides ABIE41_RS04015 and ABIE41_RS04025 are separated by 449 nucleotides ABIE41_RS04025 and ABIE41_RS04030 are separated by 16 nucleotides ABIE41_RS04030 and ABIE41_RS04035 are separated by 104 nucleotides
ABIE41_RS04010: ABIE41_RS04010 - ribonuclease P protein component, at 833,389 to 833,841
_RS04010
ABIE41_RS04015: ABIE41_RS04015 - 50S ribosomal protein L34, at 833,909 to 834,043
_RS04015
ABIE41_RS04025: ABIE41_RS04025 - DNA polymerase III subunit gamma/tau, at 834,493 to 836,367
_RS04025
ABIE41_RS04030: ABIE41_RS04030 - YbaB/EbfC family nucleoid-associated protein, at 836,384 to 836,704
_RS04030
ABIE41_RS04035: ABIE41_RS04035 - recombination mediator RecR, at 836,809 to 837,414
_RS04035
Position (kb) 834
835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2 at 836.703 kb on - strand at 836.800 kb on + strand at 836.800 kb on + strand at 836.800 kb on + strand at 836.801 kb on - strand at 836.801 kb on - strand at 836.801 kb on - strand at 836.801 kb on - strand at 836.801 kb on - strand at 837.361 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 836,703 - -0.5 836,800 + +1.7 836,800 + -0.8 836,800 + +0.2 836,801 - +0.4 836,801 - -0.3 836,801 - -1.9 836,801 - +2.4 836,801 - +0.5 837,361 + +0.3
Or see this region's nucleotide sequence