Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01245

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01235 and ABIE41_RS01240 are separated by 75 nucleotidesABIE41_RS01240 and ABIE41_RS01245 overlap by 11 nucleotidesABIE41_RS01245 and ABIE41_RS01250 overlap by 34 nucleotidesABIE41_RS01250 and ABIE41_RS01255 are separated by 431 nucleotides ABIE41_RS01235: ABIE41_RS01235 - hypothetical protein, at 248,557 to 248,826 _RS01235 ABIE41_RS01240: ABIE41_RS01240 - DNA-3-methyladenine glycosylase, at 248,902 to 249,561 _RS01240 ABIE41_RS01245: ABIE41_RS01245 - CinA family protein, at 249,551 to 250,111 _RS01245 ABIE41_RS01250: ABIE41_RS01250 - SDR family oxidoreductase, at 250,078 to 250,484 _RS01250 ABIE41_RS01255: ABIE41_RS01255 - alpha/beta hydrolase, at 250,916 to 251,776 _RS01255 Position (kb) 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 248.907 kb on + strandat 249.064 kb on + strand, within ABIE41_RS01240at 249.064 kb on + strand, within ABIE41_RS01240at 249.065 kb on - strand, within ABIE41_RS01240at 249.065 kb on - strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.148 kb on + strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.149 kb on - strand, within ABIE41_RS01240at 249.163 kb on + strand, within ABIE41_RS01240at 249.163 kb on + strand, within ABIE41_RS01240at 249.163 kb on + strand, within ABIE41_RS01240at 249.163 kb on + strand, within ABIE41_RS01240at 249.164 kb on - strand, within ABIE41_RS01240at 249.164 kb on - strand, within ABIE41_RS01240at 249.649 kb on + strand, within ABIE41_RS01245at 249.649 kb on + strand, within ABIE41_RS01245at 249.649 kb on + strand, within ABIE41_RS01245at 249.650 kb on - strand, within ABIE41_RS01245at 249.740 kb on + strand, within ABIE41_RS01245at 249.740 kb on + strand, within ABIE41_RS01245at 249.740 kb on + strand, within ABIE41_RS01245at 249.740 kb on + strand, within ABIE41_RS01245at 249.740 kb on + strand, within ABIE41_RS01245at 249.741 kb on - strand, within ABIE41_RS01245at 249.741 kb on - strand, within ABIE41_RS01245at 249.882 kb on + strand, within ABIE41_RS01245at 249.883 kb on - strand, within ABIE41_RS01245at 250.114 kb on + strandat 250.114 kb on + strandat 250.114 kb on + strandat 250.115 kb on - strandat 250.115 kb on - strandat 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.130 kb on + strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.131 kb on - strand, within ABIE41_RS01250at 250.367 kb on + strand, within ABIE41_RS01250at 250.392 kb on + strand, within ABIE41_RS01250at 250.392 kb on + strand, within ABIE41_RS01250at 250.392 kb on + strand, within ABIE41_RS01250at 250.393 kb on - strand, within ABIE41_RS01250at 250.393 kb on - strand, within ABIE41_RS01250at 250.394 kb on + strand, within ABIE41_RS01250at 250.394 kb on + strand, within ABIE41_RS01250at 250.394 kb on + strand, within ABIE41_RS01250at 250.394 kb on + strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.395 kb on - strand, within ABIE41_RS01250at 250.690 kb on - strandat 250.690 kb on - strandat 250.955 kb on + strandat 250.955 kb on + strandat 250.956 kb on - strandat 250.956 kb on - strandat 250.956 kb on - strandat 251.054 kb on + strand, within ABIE41_RS01255at 251.054 kb on + strand, within ABIE41_RS01255at 251.054 kb on + strand, within ABIE41_RS01255at 251.054 kb on + strand, within ABIE41_RS01255at 251.054 kb on + strand, within ABIE41_RS01255at 251.055 kb on - strand, within ABIE41_RS01255at 251.055 kb on - strand, within ABIE41_RS01255at 251.055 kb on - strand, within ABIE41_RS01255at 251.055 kb on - strand, within ABIE41_RS01255at 251.055 kb on - strand, within ABIE41_RS01255at 251.055 kb on - strand, within ABIE41_RS01255at 251.055 kb on - strand, within ABIE41_RS01255at 251.056 kb on + strand, within ABIE41_RS01255at 251.056 kb on + strand, within ABIE41_RS01255at 251.056 kb on + strand, within ABIE41_RS01255at 251.057 kb on - strand, within ABIE41_RS01255at 251.057 kb on - strand, within ABIE41_RS01255at 251.070 kb on - strand, within ABIE41_RS01255at 251.073 kb on + strand, within ABIE41_RS01255at 251.073 kb on + strand, within ABIE41_RS01255at 251.073 kb on + strand, within ABIE41_RS01255at 251.073 kb on + strand, within ABIE41_RS01255at 251.073 kb on + strand, within ABIE41_RS01255at 251.073 kb on + strand, within ABIE41_RS01255at 251.074 kb on - strand, within ABIE41_RS01255at 251.074 kb on - strand, within ABIE41_RS01255at 251.074 kb on - strand, within ABIE41_RS01255at 251.074 kb on - strand, within ABIE41_RS01255at 251.074 kb on - strand, within ABIE41_RS01255

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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248,907 + -1.6
249,064 + ABIE41_RS01240 0.25 -0.5
249,064 + ABIE41_RS01240 0.25 -1.1
249,065 - ABIE41_RS01240 0.25 -1.6
249,065 - ABIE41_RS01240 0.25 +0.1
249,148 + ABIE41_RS01240 0.37 -0.8
249,148 + ABIE41_RS01240 0.37 +0.1
249,148 + ABIE41_RS01240 0.37 -0.0
249,148 + ABIE41_RS01240 0.37 -0.2
249,148 + ABIE41_RS01240 0.37 -0.8
249,148 + ABIE41_RS01240 0.37 -0.7
249,148 + ABIE41_RS01240 0.37 -0.1
249,148 + ABIE41_RS01240 0.37 +0.9
249,148 + ABIE41_RS01240 0.37 -0.4
249,148 + ABIE41_RS01240 0.37 +0.6
249,148 + ABIE41_RS01240 0.37 +1.2
249,149 - ABIE41_RS01240 0.37 -1.1
249,149 - ABIE41_RS01240 0.37 -1.0
249,149 - ABIE41_RS01240 0.37 +0.2
249,149 - ABIE41_RS01240 0.37 -0.0
249,149 - ABIE41_RS01240 0.37 -0.3
249,149 - ABIE41_RS01240 0.37 -2.8
249,149 - ABIE41_RS01240 0.37 -0.8
249,149 - ABIE41_RS01240 0.37 -0.8
249,149 - ABIE41_RS01240 0.37 +0.7
249,163 + ABIE41_RS01240 0.40 -0.5
249,163 + ABIE41_RS01240 0.40 -0.3
249,163 + ABIE41_RS01240 0.40 -0.4
249,163 + ABIE41_RS01240 0.40 -0.6
249,164 - ABIE41_RS01240 0.40 -0.9
249,164 - ABIE41_RS01240 0.40 -0.6
249,649 + ABIE41_RS01245 0.17 +0.2
249,649 + ABIE41_RS01245 0.17 +0.2
249,649 + ABIE41_RS01245 0.17 -0.3
249,650 - ABIE41_RS01245 0.18 +0.1
249,740 + ABIE41_RS01245 0.34 -0.3
249,740 + ABIE41_RS01245 0.34 +0.5
249,740 + ABIE41_RS01245 0.34 -0.4
249,740 + ABIE41_RS01245 0.34 +0.9
249,740 + ABIE41_RS01245 0.34 +0.1
249,741 - ABIE41_RS01245 0.34 -0.4
249,741 - ABIE41_RS01245 0.34 -0.9
249,882 + ABIE41_RS01245 0.59 +0.1
249,883 - ABIE41_RS01245 0.59 -1.1
250,114 + +0.7
250,114 + -0.1
250,114 + -1.0
250,115 - -0.1
250,115 - -1.6
250,130 + ABIE41_RS01250 0.13 -2.0
250,130 + ABIE41_RS01250 0.13 -0.5
250,130 + ABIE41_RS01250 0.13 +0.7
250,130 + ABIE41_RS01250 0.13 +2.2
250,130 + ABIE41_RS01250 0.13 -1.1
250,130 + ABIE41_RS01250 0.13 +0.3
250,130 + ABIE41_RS01250 0.13 -1.2
250,130 + ABIE41_RS01250 0.13 +0.1
250,130 + ABIE41_RS01250 0.13 +0.6
250,130 + ABIE41_RS01250 0.13 +0.7
250,130 + ABIE41_RS01250 0.13 +0.2
250,130 + ABIE41_RS01250 0.13 -0.3
250,130 + ABIE41_RS01250 0.13 -0.3
250,130 + ABIE41_RS01250 0.13 -0.6
250,130 + ABIE41_RS01250 0.13 -0.8
250,131 - ABIE41_RS01250 0.13 -2.8
250,131 - ABIE41_RS01250 0.13 -0.8
250,131 - ABIE41_RS01250 0.13 +0.3
250,131 - ABIE41_RS01250 0.13 -0.1
250,131 - ABIE41_RS01250 0.13 +0.6
250,131 - ABIE41_RS01250 0.13 -0.7
250,131 - ABIE41_RS01250 0.13 -0.7
250,131 - ABIE41_RS01250 0.13 +1.5
250,131 - ABIE41_RS01250 0.13 +0.9
250,131 - ABIE41_RS01250 0.13 -0.8
250,131 - ABIE41_RS01250 0.13 -0.3
250,131 - ABIE41_RS01250 0.13 +0.1
250,131 - ABIE41_RS01250 0.13 +0.2
250,367 + ABIE41_RS01250 0.71 -1.6
250,392 + ABIE41_RS01250 0.77 -0.2
250,392 + ABIE41_RS01250 0.77 +0.1
250,392 + ABIE41_RS01250 0.77 -0.4
250,393 - ABIE41_RS01250 0.77 -0.7
250,393 - ABIE41_RS01250 0.77 -0.8
250,394 + ABIE41_RS01250 0.78 +3.5
250,394 + ABIE41_RS01250 0.78 -0.7
250,394 + ABIE41_RS01250 0.78 -0.8
250,394 + ABIE41_RS01250 0.78 -0.8
250,395 - ABIE41_RS01250 0.78 -0.4
250,395 - ABIE41_RS01250 0.78 +0.3
250,395 - ABIE41_RS01250 0.78 -1.6
250,395 - ABIE41_RS01250 0.78 -0.3
250,395 - ABIE41_RS01250 0.78 +0.1
250,395 - ABIE41_RS01250 0.78 +0.0
250,395 - ABIE41_RS01250 0.78 +0.3
250,395 - ABIE41_RS01250 0.78 +0.2
250,690 - +0.8
250,690 - +0.1
250,955 + +1.7
250,955 + -1.0
250,956 - +0.1
250,956 - -2.4
250,956 - -0.5
251,054 + ABIE41_RS01255 0.16 +0.1
251,054 + ABIE41_RS01255 0.16 -3.7
251,054 + ABIE41_RS01255 0.16 +1.4
251,054 + ABIE41_RS01255 0.16 -0.5
251,054 + ABIE41_RS01255 0.16 -0.1
251,055 - ABIE41_RS01255 0.16 +0.5
251,055 - ABIE41_RS01255 0.16 +0.2
251,055 - ABIE41_RS01255 0.16 -0.2
251,055 - ABIE41_RS01255 0.16 +0.1
251,055 - ABIE41_RS01255 0.16 +0.4
251,055 - ABIE41_RS01255 0.16 -0.1
251,055 - ABIE41_RS01255 0.16 -0.8
251,056 + ABIE41_RS01255 0.16 +0.5
251,056 + ABIE41_RS01255 0.16 -0.3
251,056 + ABIE41_RS01255 0.16 -2.1
251,057 - ABIE41_RS01255 0.16 -0.3
251,057 - ABIE41_RS01255 0.16 +1.8
251,070 - ABIE41_RS01255 0.18 -0.4
251,073 + ABIE41_RS01255 0.18 -0.2
251,073 + ABIE41_RS01255 0.18 +1.0
251,073 + ABIE41_RS01255 0.18 -0.6
251,073 + ABIE41_RS01255 0.18 -0.7
251,073 + ABIE41_RS01255 0.18 -1.1
251,073 + ABIE41_RS01255 0.18 +0.9
251,074 - ABIE41_RS01255 0.18 -0.0
251,074 - ABIE41_RS01255 0.18 +0.3
251,074 - ABIE41_RS01255 0.18 +0.5
251,074 - ABIE41_RS01255 0.18 +1.1
251,074 - ABIE41_RS01255 0.18 +0.3

Or see this region's nucleotide sequence