Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28150 and ABIE40_RS28155 are separated by 11 nucleotides ABIE40_RS28155 and ABIE40_RS28160 are separated by 63 nucleotides ABIE40_RS28160 and ABIE40_RS28165 are separated by 91 nucleotides ABIE40_RS28165 and ABIE40_RS28170 are separated by 161 nucleotides ABIE40_RS28170 and ABIE40_RS28175 are separated by 181 nucleotides
ABIE40_RS28150: ABIE40_RS28150 - response regulator, at 341,394 to 341,927
_RS28150
ABIE40_RS28155: ABIE40_RS28155 - hypothetical protein, at 341,939 to 342,172
_RS28155
ABIE40_RS28160: ABIE40_RS28160 - YidB family protein, at 342,236 to 342,766
_RS28160
ABIE40_RS28165: ABIE40_RS28165 - hypothetical protein, at 342,858 to 343,160
_RS28165
ABIE40_RS28170: ABIE40_RS28170 - isochorismatase family protein, at 343,322 to 343,910
_RS28170
ABIE40_RS28175: ABIE40_RS28175 - L-dopachrome tautomerase-related protein, at 344,092 to 345,261
_RS28175
Position (kb) 342
343
344 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 341.861 kb on + strand, within ABIE40_RS28150 at 341.862 kb on - strand, within ABIE40_RS28150 at 341.862 kb on - strand, within ABIE40_RS28150 at 341.868 kb on + strand, within ABIE40_RS28150 at 341.868 kb on + strand, within ABIE40_RS28150 at 341.869 kb on - strand, within ABIE40_RS28150 at 341.918 kb on + strand at 341.918 kb on + strand at 341.925 kb on + strand at 341.926 kb on - strand at 342.170 kb on + strand at 342.171 kb on - strand at 342.171 kb on - strand at 342.306 kb on + strand, within ABIE40_RS28160 at 342.306 kb on + strand, within ABIE40_RS28160 at 342.307 kb on - strand, within ABIE40_RS28160 at 342.459 kb on + strand, within ABIE40_RS28160 at 342.460 kb on - strand, within ABIE40_RS28160 at 342.460 kb on - strand, within ABIE40_RS28160 at 342.544 kb on + strand, within ABIE40_RS28160 at 342.667 kb on + strand, within ABIE40_RS28160 at 342.767 kb on + strand at 342.817 kb on - strand at 342.980 kb on + strand, within ABIE40_RS28165 at 343.079 kb on - strand, within ABIE40_RS28165 at 343.079 kb on - strand, within ABIE40_RS28165 at 343.158 kb on + strand at 343.159 kb on - strand at 343.177 kb on - strand at 343.177 kb on - strand at 343.188 kb on + strand at 343.188 kb on + strand at 343.189 kb on - strand at 343.191 kb on + strand at 343.250 kb on + strand at 343.251 kb on - strand at 343.304 kb on + strand at 343.361 kb on + strand at 343.362 kb on - strand at 343.557 kb on - strand, within ABIE40_RS28170 at 343.593 kb on + strand, within ABIE40_RS28170 at 343.593 kb on + strand, within ABIE40_RS28170 at 343.593 kb on + strand, within ABIE40_RS28170 at 343.593 kb on + strand, within ABIE40_RS28170 at 343.594 kb on - strand, within ABIE40_RS28170 at 343.594 kb on - strand, within ABIE40_RS28170 at 343.704 kb on + strand, within ABIE40_RS28170 at 343.704 kb on + strand, within ABIE40_RS28170 at 343.705 kb on - strand, within ABIE40_RS28170 at 343.705 kb on - strand, within ABIE40_RS28170 at 343.705 kb on - strand, within ABIE40_RS28170 at 343.707 kb on + strand, within ABIE40_RS28170 at 343.707 kb on + strand, within ABIE40_RS28170 at 343.707 kb on + strand, within ABIE40_RS28170 at 343.708 kb on - strand, within ABIE40_RS28170 at 343.708 kb on - strand, within ABIE40_RS28170 at 343.862 kb on + strand at 343.863 kb on - strand at 343.863 kb on - strand at 343.863 kb on - strand at 343.937 kb on + strand at 344.028 kb on - strand at 344.071 kb on + strand at 344.071 kb on + strand at 344.081 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 341,861 + ABIE40_RS28150 0.87 +2.4 341,862 - ABIE40_RS28150 0.88 +0.1 341,862 - ABIE40_RS28150 0.88 +1.9 341,868 + ABIE40_RS28150 0.89 -0.3 341,868 + ABIE40_RS28150 0.89 -0.5 341,869 - ABIE40_RS28150 0.89 +0.5 341,918 + +0.7 341,918 + +1.1 341,925 + +0.4 341,926 - +0.8 342,170 + +1.2 342,171 - -1.2 342,171 - +0.3 342,306 + ABIE40_RS28160 0.13 -1.0 342,306 + ABIE40_RS28160 0.13 -0.9 342,307 - ABIE40_RS28160 0.13 -0.9 342,459 + ABIE40_RS28160 0.42 -1.1 342,460 - ABIE40_RS28160 0.42 -0.0 342,460 - ABIE40_RS28160 0.42 +1.2 342,544 + ABIE40_RS28160 0.58 -1.6 342,667 + ABIE40_RS28160 0.81 -1.3 342,767 + -0.9 342,817 - +1.0 342,980 + ABIE40_RS28165 0.40 -2.5 343,079 - ABIE40_RS28165 0.73 +0.3 343,079 - ABIE40_RS28165 0.73 -0.2 343,158 + +0.6 343,159 - +1.3 343,177 - -2.1 343,177 - +3.1 343,188 + +2.2 343,188 + +0.1 343,189 - +2.1 343,191 + +0.2 343,250 + -0.3 343,251 - -2.0 343,304 + +0.6 343,361 + +0.8 343,362 - -1.8 343,557 - ABIE40_RS28170 0.40 +0.5 343,593 + ABIE40_RS28170 0.46 -0.8 343,593 + ABIE40_RS28170 0.46 +1.2 343,593 + ABIE40_RS28170 0.46 -1.4 343,593 + ABIE40_RS28170 0.46 -1.4 343,594 - ABIE40_RS28170 0.46 -1.9 343,594 - ABIE40_RS28170 0.46 -2.9 343,704 + ABIE40_RS28170 0.65 -1.0 343,704 + ABIE40_RS28170 0.65 -0.2 343,705 - ABIE40_RS28170 0.65 -0.2 343,705 - ABIE40_RS28170 0.65 -1.2 343,705 - ABIE40_RS28170 0.65 -1.6 343,707 + ABIE40_RS28170 0.65 +0.4 343,707 + ABIE40_RS28170 0.65 +1.4 343,707 + ABIE40_RS28170 0.65 +0.8 343,708 - ABIE40_RS28170 0.66 -1.2 343,708 - ABIE40_RS28170 0.66 +1.5 343,862 + +1.6 343,863 - +0.2 343,863 - -2.0 343,863 - +0.5 343,937 + -0.8 344,028 - -0.0 344,071 + -1.2 344,071 + -0.8 344,081 + +1.4
Or see this region's nucleotide sequence