Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS28125 and ABIE40_RS28130 are separated by 166 nucleotides ABIE40_RS28130 and ABIE40_RS28135 are separated by 129 nucleotides
ABIE40_RS28125: ABIE40_RS28125 - alpha/beta hydrolase, at 332,720 to 333,575
_RS28125
ABIE40_RS28130: ABIE40_RS28130 - response regulator, at 333,742 to 335,949
_RS28130
ABIE40_RS28135: ABIE40_RS28135 - ATP-binding protein, at 336,079 to 338,175
_RS28135
Position (kb) 333
334
335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 332.850 kb on + strand, within ABIE40_RS28125 at 332.850 kb on + strand, within ABIE40_RS28125 at 332.850 kb on + strand, within ABIE40_RS28125 at 332.850 kb on + strand, within ABIE40_RS28125 at 332.851 kb on - strand, within ABIE40_RS28125 at 332.851 kb on - strand, within ABIE40_RS28125 at 332.851 kb on - strand, within ABIE40_RS28125 at 332.851 kb on - strand, within ABIE40_RS28125 at 332.851 kb on - strand, within ABIE40_RS28125 at 332.851 kb on - strand, within ABIE40_RS28125 at 332.852 kb on + strand, within ABIE40_RS28125 at 332.853 kb on - strand, within ABIE40_RS28125 at 332.853 kb on - strand, within ABIE40_RS28125 at 332.853 kb on - strand, within ABIE40_RS28125 at 332.968 kb on - strand, within ABIE40_RS28125 at 332.979 kb on + strand, within ABIE40_RS28125 at 333.027 kb on + strand, within ABIE40_RS28125 at 333.027 kb on + strand, within ABIE40_RS28125 at 333.028 kb on - strand, within ABIE40_RS28125 at 333.063 kb on + strand, within ABIE40_RS28125 at 333.063 kb on + strand, within ABIE40_RS28125 at 333.064 kb on - strand, within ABIE40_RS28125 at 333.064 kb on - strand, within ABIE40_RS28125 at 333.132 kb on + strand, within ABIE40_RS28125 at 333.132 kb on + strand, within ABIE40_RS28125 at 333.252 kb on + strand, within ABIE40_RS28125 at 333.266 kb on + strand, within ABIE40_RS28125 at 333.274 kb on - strand, within ABIE40_RS28125 at 333.274 kb on - strand, within ABIE40_RS28125 at 333.281 kb on + strand, within ABIE40_RS28125 at 333.282 kb on - strand, within ABIE40_RS28125 at 333.379 kb on + strand, within ABIE40_RS28125 at 333.379 kb on + strand, within ABIE40_RS28125 at 333.379 kb on + strand, within ABIE40_RS28125 at 333.379 kb on + strand, within ABIE40_RS28125 at 333.379 kb on + strand, within ABIE40_RS28125 at 333.379 kb on + strand, within ABIE40_RS28125 at 333.379 kb on + strand, within ABIE40_RS28125 at 333.380 kb on - strand, within ABIE40_RS28125 at 333.380 kb on - strand, within ABIE40_RS28125 at 333.380 kb on - strand, within ABIE40_RS28125 at 333.380 kb on - strand, within ABIE40_RS28125 at 333.380 kb on - strand, within ABIE40_RS28125 at 333.461 kb on + strand, within ABIE40_RS28125 at 333.461 kb on + strand, within ABIE40_RS28125 at 333.462 kb on - strand, within ABIE40_RS28125 at 333.494 kb on + strand at 333.495 kb on - strand at 333.495 kb on - strand at 333.703 kb on + strand at 333.704 kb on - strand at 333.704 kb on - strand at 333.714 kb on + strand at 333.715 kb on - strand at 333.744 kb on - strand at 333.746 kb on - strand at 333.750 kb on + strand at 333.750 kb on + strand at 333.750 kb on + strand at 333.750 kb on + strand at 333.751 kb on - strand at 333.760 kb on + strand at 334.059 kb on + strand, within ABIE40_RS28130 at 334.135 kb on + strand, within ABIE40_RS28130 at 334.136 kb on - strand, within ABIE40_RS28130 at 334.136 kb on - strand, within ABIE40_RS28130 at 334.136 kb on - strand, within ABIE40_RS28130 at 334.287 kb on + strand, within ABIE40_RS28130 at 334.289 kb on + strand, within ABIE40_RS28130 at 334.355 kb on + strand, within ABIE40_RS28130 at 334.356 kb on - strand, within ABIE40_RS28130 at 334.440 kb on + strand, within ABIE40_RS28130 at 334.606 kb on - strand, within ABIE40_RS28130 at 334.674 kb on - strand, within ABIE40_RS28130 at 334.710 kb on - strand, within ABIE40_RS28130 at 334.874 kb on + strand, within ABIE40_RS28130 at 334.910 kb on + strand, within ABIE40_RS28130 at 334.910 kb on + strand, within ABIE40_RS28130 at 334.911 kb on - strand, within ABIE40_RS28130 at 335.001 kb on + strand, within ABIE40_RS28130 at 335.012 kb on - strand, within ABIE40_RS28130 at 335.034 kb on - strand, within ABIE40_RS28130 at 335.260 kb on - strand, within ABIE40_RS28130 at 335.515 kb on + strand, within ABIE40_RS28130 at 335.515 kb on + strand, within ABIE40_RS28130 at 335.516 kb on - strand, within ABIE40_RS28130 at 335.709 kb on - strand, within ABIE40_RS28130 at 335.835 kb on + strand at 335.835 kb on + strand at 335.836 kb on - strand at 335.836 kb on - strand at 335.837 kb on + strand at 335.837 kb on + strand at 335.837 kb on + strand at 335.838 kb on - strand at 335.844 kb on + strand at 335.844 kb on + strand at 335.844 kb on + strand at 335.844 kb on + strand at 335.845 kb on - strand at 335.845 kb on - strand at 335.845 kb on - strand at 335.845 kb on - strand at 335.845 kb on - strand at 335.845 kb on - strand at 335.846 kb on + strand at 335.846 kb on + strand at 335.847 kb on + strand at 335.847 kb on - strand at 335.847 kb on - strand at 335.847 kb on - strand at 335.847 kb on - strand at 335.847 kb on - strand at 335.847 kb on - strand at 335.877 kb on - strand at 336.110 kb on + strand at 336.335 kb on + strand, within ABIE40_RS28135 at 336.335 kb on + strand, within ABIE40_RS28135 at 336.335 kb on + strand, within ABIE40_RS28135 at 336.335 kb on + strand, within ABIE40_RS28135 at 336.336 kb on - strand, within ABIE40_RS28135 at 336.336 kb on - strand, within ABIE40_RS28135 at 336.362 kb on + strand, within ABIE40_RS28135 at 336.362 kb on + strand, within ABIE40_RS28135 at 336.429 kb on + strand, within ABIE40_RS28135 at 336.429 kb on + strand, within ABIE40_RS28135 at 336.429 kb on + strand, within ABIE40_RS28135 at 336.430 kb on - strand, within ABIE40_RS28135 at 336.430 kb on - strand, within ABIE40_RS28135 at 336.432 kb on + strand, within ABIE40_RS28135 at 336.432 kb on + strand, within ABIE40_RS28135 at 336.432 kb on + strand, within ABIE40_RS28135 at 336.433 kb on - strand, within ABIE40_RS28135 at 336.433 kb on - strand, within ABIE40_RS28135 at 336.433 kb on - strand, within ABIE40_RS28135 at 336.463 kb on - strand, within ABIE40_RS28135 at 336.497 kb on + strand, within ABIE40_RS28135 at 336.497 kb on + strand, within ABIE40_RS28135 at 336.497 kb on + strand, within ABIE40_RS28135 at 336.498 kb on - strand, within ABIE40_RS28135 at 336.498 kb on - strand, within ABIE40_RS28135 at 336.498 kb on - strand, within ABIE40_RS28135 at 336.498 kb on - strand, within ABIE40_RS28135 at 336.578 kb on - strand, within ABIE40_RS28135 at 336.811 kb on + strand, within ABIE40_RS28135 at 336.811 kb on + strand, within ABIE40_RS28135 at 336.812 kb on - strand, within ABIE40_RS28135 at 336.812 kb on - strand, within ABIE40_RS28135 at 336.932 kb on + strand, within ABIE40_RS28135 at 336.933 kb on - strand, within ABIE40_RS28135 at 336.933 kb on - strand, within ABIE40_RS28135
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 332,850 + ABIE40_RS28125 0.15 -0.9 332,850 + ABIE40_RS28125 0.15 +1.8 332,850 + ABIE40_RS28125 0.15 -0.8 332,850 + ABIE40_RS28125 0.15 +2.2 332,851 - ABIE40_RS28125 0.15 -0.3 332,851 - ABIE40_RS28125 0.15 -0.8 332,851 - ABIE40_RS28125 0.15 +0.5 332,851 - ABIE40_RS28125 0.15 -0.7 332,851 - ABIE40_RS28125 0.15 -1.9 332,851 - ABIE40_RS28125 0.15 +0.5 332,852 + ABIE40_RS28125 0.15 +2.8 332,853 - ABIE40_RS28125 0.16 -0.7 332,853 - ABIE40_RS28125 0.16 -0.4 332,853 - ABIE40_RS28125 0.16 -2.0 332,968 - ABIE40_RS28125 0.29 -0.6 332,979 + ABIE40_RS28125 0.30 -0.3 333,027 + ABIE40_RS28125 0.36 -0.6 333,027 + ABIE40_RS28125 0.36 -1.3 333,028 - ABIE40_RS28125 0.36 -0.2 333,063 + ABIE40_RS28125 0.40 +0.3 333,063 + ABIE40_RS28125 0.40 -1.4 333,064 - ABIE40_RS28125 0.40 +0.1 333,064 - ABIE40_RS28125 0.40 -1.1 333,132 + ABIE40_RS28125 0.48 +0.8 333,132 + ABIE40_RS28125 0.48 -1.2 333,252 + ABIE40_RS28125 0.62 -0.3 333,266 + ABIE40_RS28125 0.64 -0.1 333,274 - ABIE40_RS28125 0.65 +0.1 333,274 - ABIE40_RS28125 0.65 -0.9 333,281 + ABIE40_RS28125 0.66 -0.6 333,282 - ABIE40_RS28125 0.66 -0.5 333,379 + ABIE40_RS28125 0.77 +1.2 333,379 + ABIE40_RS28125 0.77 -0.4 333,379 + ABIE40_RS28125 0.77 +0.4 333,379 + ABIE40_RS28125 0.77 -1.2 333,379 + ABIE40_RS28125 0.77 +0.3 333,379 + ABIE40_RS28125 0.77 -0.7 333,379 + ABIE40_RS28125 0.77 -0.1 333,380 - ABIE40_RS28125 0.77 +1.3 333,380 - ABIE40_RS28125 0.77 -0.2 333,380 - ABIE40_RS28125 0.77 +2.2 333,380 - ABIE40_RS28125 0.77 -1.5 333,380 - ABIE40_RS28125 0.77 -1.6 333,461 + ABIE40_RS28125 0.87 -0.6 333,461 + ABIE40_RS28125 0.87 +0.5 333,462 - ABIE40_RS28125 0.87 +0.3 333,494 + +0.1 333,495 - +0.1 333,495 - -0.6 333,703 + -2.2 333,704 - -1.2 333,704 - +1.2 333,714 + +1.4 333,715 - -1.6 333,744 - -0.7 333,746 - +2.8 333,750 + +0.0 333,750 + +2.6 333,750 + +0.6 333,750 + -1.1 333,751 - -1.1 333,760 + -0.9 334,059 + ABIE40_RS28130 0.14 -1.5 334,135 + ABIE40_RS28130 0.18 -1.2 334,136 - ABIE40_RS28130 0.18 -0.0 334,136 - ABIE40_RS28130 0.18 -0.5 334,136 - ABIE40_RS28130 0.18 +0.4 334,287 + ABIE40_RS28130 0.25 -1.2 334,289 + ABIE40_RS28130 0.25 -2.0 334,355 + ABIE40_RS28130 0.28 -1.4 334,356 - ABIE40_RS28130 0.28 -0.7 334,440 + ABIE40_RS28130 0.32 -0.6 334,606 - ABIE40_RS28130 0.39 -1.9 334,674 - ABIE40_RS28130 0.42 +0.6 334,710 - ABIE40_RS28130 0.44 +0.8 334,874 + ABIE40_RS28130 0.51 +0.1 334,910 + ABIE40_RS28130 0.53 +3.4 334,910 + ABIE40_RS28130 0.53 -0.6 334,911 - ABIE40_RS28130 0.53 +1.5 335,001 + ABIE40_RS28130 0.57 -0.7 335,012 - ABIE40_RS28130 0.58 +0.9 335,034 - ABIE40_RS28130 0.59 +0.3 335,260 - ABIE40_RS28130 0.69 +1.5 335,515 + ABIE40_RS28130 0.80 -0.4 335,515 + ABIE40_RS28130 0.80 +1.2 335,516 - ABIE40_RS28130 0.80 -1.5 335,709 - ABIE40_RS28130 0.89 -0.4 335,835 + +3.3 335,835 + +0.5 335,836 - -3.7 335,836 - -0.4 335,837 + -1.4 335,837 + -0.5 335,837 + -1.3 335,838 - -0.2 335,844 + +0.1 335,844 + +0.5 335,844 + -1.3 335,844 + -2.0 335,845 - +1.7 335,845 - -0.7 335,845 - +0.4 335,845 - +0.1 335,845 - +1.4 335,845 - +0.0 335,846 + -1.6 335,846 + -0.8 335,847 + -0.5 335,847 - -0.4 335,847 - -0.3 335,847 - -0.4 335,847 - -2.1 335,847 - +0.2 335,847 - +0.4 335,877 - +3.7 336,110 + -0.1 336,335 + ABIE40_RS28135 0.12 -1.7 336,335 + ABIE40_RS28135 0.12 -0.2 336,335 + ABIE40_RS28135 0.12 +0.6 336,335 + ABIE40_RS28135 0.12 -1.5 336,336 - ABIE40_RS28135 0.12 +0.4 336,336 - ABIE40_RS28135 0.12 -0.4 336,362 + ABIE40_RS28135 0.13 -1.4 336,362 + ABIE40_RS28135 0.13 -0.6 336,429 + ABIE40_RS28135 0.17 -1.6 336,429 + ABIE40_RS28135 0.17 -0.7 336,429 + ABIE40_RS28135 0.17 -1.5 336,430 - ABIE40_RS28135 0.17 +0.6 336,430 - ABIE40_RS28135 0.17 -0.6 336,432 + ABIE40_RS28135 0.17 -2.5 336,432 + ABIE40_RS28135 0.17 +0.1 336,432 + ABIE40_RS28135 0.17 -1.1 336,433 - ABIE40_RS28135 0.17 -0.7 336,433 - ABIE40_RS28135 0.17 +0.2 336,433 - ABIE40_RS28135 0.17 -1.6 336,463 - ABIE40_RS28135 0.18 -1.6 336,497 + ABIE40_RS28135 0.20 +0.6 336,497 + ABIE40_RS28135 0.20 +1.1 336,497 + ABIE40_RS28135 0.20 -0.8 336,498 - ABIE40_RS28135 0.20 -0.3 336,498 - ABIE40_RS28135 0.20 +1.3 336,498 - ABIE40_RS28135 0.20 +1.1 336,498 - ABIE40_RS28135 0.20 +0.4 336,578 - ABIE40_RS28135 0.24 -0.2 336,811 + ABIE40_RS28135 0.35 +0.9 336,811 + ABIE40_RS28135 0.35 -0.8 336,812 - ABIE40_RS28135 0.35 +0.2 336,812 - ABIE40_RS28135 0.35 -0.3 336,932 + ABIE40_RS28135 0.41 -0.0 336,933 - ABIE40_RS28135 0.41 -0.7 336,933 - ABIE40_RS28135 0.41 +0.9
Or see this region's nucleotide sequence