Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS26655 and ABIE40_RS26660 are separated by 204 nucleotides ABIE40_RS26660 and ABIE40_RS26665 are separated by 295 nucleotides
ABIE40_RS26655: ABIE40_RS26655 - hypothetical protein, at 50,704 to 51,405
_RS26655
ABIE40_RS26660: ABIE40_RS26660 - thiamine pyrophosphate-requiring protein, at 51,610 to 53,400
_RS26660
ABIE40_RS26665: ABIE40_RS26665 - NAD(P)H-dependent oxidoreductase, at 53,696 to 54,313
_RS26665
Position (kb) 51
52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 50.728 kb on - strand at 50.851 kb on + strand, within ABIE40_RS26655 at 51.070 kb on + strand, within ABIE40_RS26655 at 51.070 kb on + strand, within ABIE40_RS26655 at 51.070 kb on + strand, within ABIE40_RS26655 at 51.071 kb on - strand, within ABIE40_RS26655 at 51.090 kb on - strand, within ABIE40_RS26655 at 51.149 kb on + strand, within ABIE40_RS26655 at 51.149 kb on + strand, within ABIE40_RS26655 at 51.150 kb on - strand, within ABIE40_RS26655 at 51.150 kb on - strand, within ABIE40_RS26655 at 51.150 kb on - strand, within ABIE40_RS26655 at 51.150 kb on - strand, within ABIE40_RS26655 at 51.150 kb on - strand, within ABIE40_RS26655 at 51.395 kb on - strand at 51.419 kb on + strand at 51.419 kb on + strand at 51.422 kb on + strand at 51.422 kb on + strand at 51.423 kb on - strand at 51.423 kb on - strand at 51.430 kb on - strand at 51.736 kb on + strand at 51.737 kb on - strand at 51.737 kb on - strand at 51.737 kb on - strand at 51.851 kb on + strand, within ABIE40_RS26660 at 51.851 kb on + strand, within ABIE40_RS26660 at 51.851 kb on + strand, within ABIE40_RS26660 at 51.852 kb on - strand, within ABIE40_RS26660 at 51.852 kb on - strand, within ABIE40_RS26660 at 51.852 kb on - strand, within ABIE40_RS26660 at 51.891 kb on - strand, within ABIE40_RS26660 at 51.927 kb on + strand, within ABIE40_RS26660 at 51.927 kb on + strand, within ABIE40_RS26660 at 52.375 kb on - strand, within ABIE40_RS26660 at 52.414 kb on + strand, within ABIE40_RS26660 at 52.414 kb on + strand, within ABIE40_RS26660 at 52.415 kb on - strand, within ABIE40_RS26660 at 52.415 kb on - strand, within ABIE40_RS26660 at 52.498 kb on - strand, within ABIE40_RS26660 at 52.507 kb on + strand, within ABIE40_RS26660 at 52.691 kb on - strand, within ABIE40_RS26660 at 52.825 kb on + strand, within ABIE40_RS26660 at 52.923 kb on + strand, within ABIE40_RS26660 at 52.924 kb on - strand, within ABIE40_RS26660 at 52.924 kb on - strand, within ABIE40_RS26660 at 52.998 kb on + strand, within ABIE40_RS26660 at 52.999 kb on - strand, within ABIE40_RS26660 at 53.066 kb on + strand, within ABIE40_RS26660 at 53.141 kb on + strand, within ABIE40_RS26660 at 53.142 kb on - strand, within ABIE40_RS26660 at 53.143 kb on + strand, within ABIE40_RS26660 at 53.144 kb on - strand, within ABIE40_RS26660 at 53.144 kb on - strand, within ABIE40_RS26660 at 53.144 kb on - strand, within ABIE40_RS26660 at 53.144 kb on - strand, within ABIE40_RS26660 at 53.144 kb on - strand, within ABIE40_RS26660 at 53.144 kb on - strand, within ABIE40_RS26660 at 53.144 kb on - strand, within ABIE40_RS26660 at 53.187 kb on + strand, within ABIE40_RS26660 at 53.188 kb on - strand, within ABIE40_RS26660 at 53.331 kb on - strand at 53.419 kb on + strand at 53.419 kb on + strand at 53.419 kb on + strand at 53.420 kb on - strand at 53.420 kb on - strand at 53.507 kb on - strand at 53.554 kb on - strand at 53.554 kb on - strand at 53.554 kb on - strand at 53.556 kb on + strand at 53.556 kb on + strand at 53.556 kb on + strand at 53.557 kb on - strand at 53.560 kb on - strand at 53.631 kb on + strand at 53.631 kb on + strand at 53.632 kb on - strand at 53.632 kb on - strand at 53.632 kb on - strand at 53.695 kb on + strand at 53.695 kb on + strand at 53.695 kb on + strand at 53.695 kb on + strand at 53.704 kb on + strand at 53.704 kb on + strand at 53.730 kb on + strand at 53.824 kb on - strand, within ABIE40_RS26665 at 53.859 kb on + strand, within ABIE40_RS26665 at 53.859 kb on + strand, within ABIE40_RS26665 at 53.924 kb on - strand, within ABIE40_RS26665 at 53.929 kb on + strand, within ABIE40_RS26665 at 53.930 kb on - strand, within ABIE40_RS26665 at 53.930 kb on - strand, within ABIE40_RS26665 at 53.930 kb on - strand, within ABIE40_RS26665 at 53.930 kb on - strand, within ABIE40_RS26665 at 53.975 kb on - strand, within ABIE40_RS26665 at 54.137 kb on - strand, within ABIE40_RS26665 at 54.162 kb on - strand, within ABIE40_RS26665 at 54.190 kb on + strand, within ABIE40_RS26665 at 54.191 kb on - strand, within ABIE40_RS26665 at 54.256 kb on + strand at 54.257 kb on - strand at 54.332 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 50,728 - -0.1 50,851 + ABIE40_RS26655 0.21 -0.6 51,070 + ABIE40_RS26655 0.52 +0.1 51,070 + ABIE40_RS26655 0.52 -2.0 51,070 + ABIE40_RS26655 0.52 -1.8 51,071 - ABIE40_RS26655 0.52 +1.1 51,090 - ABIE40_RS26655 0.55 +1.6 51,149 + ABIE40_RS26655 0.63 +1.2 51,149 + ABIE40_RS26655 0.63 +1.4 51,150 - ABIE40_RS26655 0.64 -0.6 51,150 - ABIE40_RS26655 0.64 -0.5 51,150 - ABIE40_RS26655 0.64 -0.1 51,150 - ABIE40_RS26655 0.64 -1.6 51,150 - ABIE40_RS26655 0.64 -1.9 51,395 - -1.8 51,419 + -0.1 51,419 + -1.0 51,422 + -0.4 51,422 + +0.0 51,423 - +0.2 51,423 - -3.3 51,430 - +0.2 51,736 + -0.0 51,737 - +0.0 51,737 - -2.7 51,737 - -1.4 51,851 + ABIE40_RS26660 0.13 -0.9 51,851 + ABIE40_RS26660 0.13 +0.1 51,851 + ABIE40_RS26660 0.13 +0.1 51,852 - ABIE40_RS26660 0.14 -0.2 51,852 - ABIE40_RS26660 0.14 -0.3 51,852 - ABIE40_RS26660 0.14 -3.1 51,891 - ABIE40_RS26660 0.16 +0.7 51,927 + ABIE40_RS26660 0.18 +0.9 51,927 + ABIE40_RS26660 0.18 -0.6 52,375 - ABIE40_RS26660 0.43 -1.7 52,414 + ABIE40_RS26660 0.45 -1.3 52,414 + ABIE40_RS26660 0.45 -0.5 52,415 - ABIE40_RS26660 0.45 +0.2 52,415 - ABIE40_RS26660 0.45 -1.4 52,498 - ABIE40_RS26660 0.50 -0.6 52,507 + ABIE40_RS26660 0.50 -2.1 52,691 - ABIE40_RS26660 0.60 -1.0 52,825 + ABIE40_RS26660 0.68 -1.5 52,923 + ABIE40_RS26660 0.73 -0.4 52,924 - ABIE40_RS26660 0.73 -0.1 52,924 - ABIE40_RS26660 0.73 -1.9 52,998 + ABIE40_RS26660 0.77 +0.9 52,999 - ABIE40_RS26660 0.78 +0.4 53,066 + ABIE40_RS26660 0.81 +1.6 53,141 + ABIE40_RS26660 0.85 +0.3 53,142 - ABIE40_RS26660 0.86 +1.1 53,143 + ABIE40_RS26660 0.86 -1.4 53,144 - ABIE40_RS26660 0.86 -0.3 53,144 - ABIE40_RS26660 0.86 +2.7 53,144 - ABIE40_RS26660 0.86 +0.8 53,144 - ABIE40_RS26660 0.86 +0.0 53,144 - ABIE40_RS26660 0.86 -2.8 53,144 - ABIE40_RS26660 0.86 +0.2 53,144 - ABIE40_RS26660 0.86 +1.6 53,187 + ABIE40_RS26660 0.88 -0.5 53,188 - ABIE40_RS26660 0.88 -0.6 53,331 - -1.6 53,419 + +1.7 53,419 + -1.1 53,419 + -1.4 53,420 - +2.1 53,420 - +0.8 53,507 - -0.4 53,554 - +2.4 53,554 - +0.0 53,554 - -2.3 53,556 + -1.2 53,556 + -0.7 53,556 + -1.1 53,557 - +0.1 53,560 - -0.4 53,631 + -1.5 53,631 + +0.5 53,632 - -0.3 53,632 - -1.3 53,632 - -1.0 53,695 + +0.6 53,695 + +1.1 53,695 + -1.2 53,695 + -0.7 53,704 + -0.9 53,704 + -1.3 53,730 + +0.6 53,824 - ABIE40_RS26665 0.21 -1.3 53,859 + ABIE40_RS26665 0.26 -1.0 53,859 + ABIE40_RS26665 0.26 -1.2 53,924 - ABIE40_RS26665 0.37 +0.9 53,929 + ABIE40_RS26665 0.38 +0.7 53,930 - ABIE40_RS26665 0.38 -0.9 53,930 - ABIE40_RS26665 0.38 -0.1 53,930 - ABIE40_RS26665 0.38 -0.2 53,930 - ABIE40_RS26665 0.38 -0.7 53,975 - ABIE40_RS26665 0.45 +1.7 54,137 - ABIE40_RS26665 0.71 +3.4 54,162 - ABIE40_RS26665 0.75 +0.9 54,190 + ABIE40_RS26665 0.80 -1.4 54,191 - ABIE40_RS26665 0.80 +0.4 54,256 + -0.6 54,257 - +1.1 54,332 + -0.9
Or see this region's nucleotide sequence