Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22945

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22940 and ABIE40_RS22945 are separated by 67 nucleotidesABIE40_RS22945 and ABIE40_RS22950 are separated by 9 nucleotides ABIE40_RS22940: ABIE40_RS22940 - ABC transporter substrate-binding protein, at 735,139 to 736,083 _RS22940 ABIE40_RS22945: ABIE40_RS22945 - ABC transporter substrate-binding protein, at 736,151 to 737,086 _RS22945 ABIE40_RS22950: ABIE40_RS22950 - LLM class flavin-dependent oxidoreductase, at 737,096 to 738,169 _RS22950 Position (kb) 736 737 738Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 735.154 kb on - strandat 735.373 kb on + strand, within ABIE40_RS22940at 735.374 kb on - strand, within ABIE40_RS22940at 735.374 kb on - strand, within ABIE40_RS22940at 735.374 kb on - strand, within ABIE40_RS22940at 735.376 kb on - strand, within ABIE40_RS22940at 735.425 kb on + strand, within ABIE40_RS22940at 735.426 kb on - strand, within ABIE40_RS22940at 735.504 kb on + strand, within ABIE40_RS22940at 735.505 kb on - strand, within ABIE40_RS22940at 735.508 kb on + strand, within ABIE40_RS22940at 735.508 kb on + strand, within ABIE40_RS22940at 735.508 kb on + strand, within ABIE40_RS22940at 735.508 kb on + strand, within ABIE40_RS22940at 735.508 kb on + strand, within ABIE40_RS22940at 735.509 kb on - strand, within ABIE40_RS22940at 735.509 kb on - strand, within ABIE40_RS22940at 735.509 kb on - strand, within ABIE40_RS22940at 735.509 kb on - strand, within ABIE40_RS22940at 735.509 kb on - strand, within ABIE40_RS22940at 735.574 kb on + strand, within ABIE40_RS22940at 735.575 kb on - strand, within ABIE40_RS22940at 735.598 kb on + strand, within ABIE40_RS22940at 735.598 kb on + strand, within ABIE40_RS22940at 735.598 kb on + strand, within ABIE40_RS22940at 735.598 kb on + strand, within ABIE40_RS22940at 735.599 kb on - strand, within ABIE40_RS22940at 735.599 kb on - strand, within ABIE40_RS22940at 735.599 kb on - strand, within ABIE40_RS22940at 735.599 kb on - strand, within ABIE40_RS22940at 735.754 kb on + strand, within ABIE40_RS22940at 735.755 kb on - strand, within ABIE40_RS22940at 735.755 kb on - strand, within ABIE40_RS22940at 735.757 kb on + strand, within ABIE40_RS22940at 735.757 kb on + strand, within ABIE40_RS22940at 735.757 kb on + strand, within ABIE40_RS22940at 735.839 kb on - strand, within ABIE40_RS22940at 735.991 kb on + strandat 735.991 kb on + strandat 735.991 kb on + strandat 735.991 kb on + strandat 735.992 kb on - strandat 735.992 kb on - strandat 735.992 kb on - strandat 735.992 kb on - strandat 735.992 kb on - strandat 736.081 kb on + strandat 736.081 kb on + strandat 736.082 kb on - strandat 736.082 kb on - strandat 736.147 kb on + strandat 736.147 kb on + strandat 736.148 kb on - strandat 736.148 kb on - strandat 736.199 kb on - strandat 736.199 kb on - strandat 736.343 kb on - strand, within ABIE40_RS22945at 736.382 kb on + strand, within ABIE40_RS22945at 736.382 kb on + strand, within ABIE40_RS22945at 736.382 kb on + strand, within ABIE40_RS22945at 736.382 kb on + strand, within ABIE40_RS22945at 736.383 kb on - strand, within ABIE40_RS22945at 736.383 kb on - strand, within ABIE40_RS22945at 736.383 kb on - strand, within ABIE40_RS22945at 736.425 kb on - strand, within ABIE40_RS22945at 736.517 kb on + strand, within ABIE40_RS22945at 736.517 kb on + strand, within ABIE40_RS22945at 736.518 kb on - strand, within ABIE40_RS22945at 736.518 kb on - strand, within ABIE40_RS22945at 736.518 kb on - strand, within ABIE40_RS22945at 736.648 kb on + strand, within ABIE40_RS22945at 736.648 kb on + strand, within ABIE40_RS22945at 736.763 kb on + strand, within ABIE40_RS22945at 736.763 kb on + strand, within ABIE40_RS22945at 737.000 kb on + strandat 737.000 kb on + strandat 737.316 kb on + strand, within ABIE40_RS22950at 737.316 kb on + strand, within ABIE40_RS22950at 737.316 kb on + strand, within ABIE40_RS22950at 737.317 kb on - strand, within ABIE40_RS22950at 737.317 kb on - strand, within ABIE40_RS22950at 737.546 kb on + strand, within ABIE40_RS22950at 737.546 kb on + strand, within ABIE40_RS22950at 737.547 kb on - strand, within ABIE40_RS22950at 737.547 kb on - strand, within ABIE40_RS22950at 737.642 kb on + strand, within ABIE40_RS22950at 737.642 kb on + strand, within ABIE40_RS22950at 737.643 kb on - strand, within ABIE40_RS22950at 737.643 kb on - strand, within ABIE40_RS22950at 737.772 kb on - strand, within ABIE40_RS22950at 737.861 kb on + strand, within ABIE40_RS22950at 737.861 kb on + strand, within ABIE40_RS22950at 737.870 kb on + strand, within ABIE40_RS22950at 737.871 kb on - strand, within ABIE40_RS22950at 737.973 kb on + strand, within ABIE40_RS22950at 737.974 kb on - strand, within ABIE40_RS22950at 737.974 kb on - strand, within ABIE40_RS22950at 737.974 kb on - strand, within ABIE40_RS22950at 737.976 kb on - strand, within ABIE40_RS22950at 738.026 kb on + strand, within ABIE40_RS22950at 738.026 kb on + strand, within ABIE40_RS22950at 738.027 kb on - strand, within ABIE40_RS22950at 738.061 kb on - strand, within ABIE40_RS22950

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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735,154 - +0.0
735,373 + ABIE40_RS22940 0.25 +0.0
735,374 - ABIE40_RS22940 0.25 +1.4
735,374 - ABIE40_RS22940 0.25 +0.8
735,374 - ABIE40_RS22940 0.25 -0.3
735,376 - ABIE40_RS22940 0.25 +0.4
735,425 + ABIE40_RS22940 0.30 +1.5
735,426 - ABIE40_RS22940 0.30 +1.4
735,504 + ABIE40_RS22940 0.39 +1.2
735,505 - ABIE40_RS22940 0.39 +0.4
735,508 + ABIE40_RS22940 0.39 +0.1
735,508 + ABIE40_RS22940 0.39 +0.6
735,508 + ABIE40_RS22940 0.39 -0.1
735,508 + ABIE40_RS22940 0.39 +0.4
735,508 + ABIE40_RS22940 0.39 +1.9
735,509 - ABIE40_RS22940 0.39 -1.6
735,509 - ABIE40_RS22940 0.39 -0.2
735,509 - ABIE40_RS22940 0.39 +0.8
735,509 - ABIE40_RS22940 0.39 +4.8
735,509 - ABIE40_RS22940 0.39 -0.2
735,574 + ABIE40_RS22940 0.46 +1.8
735,575 - ABIE40_RS22940 0.46 -0.3
735,598 + ABIE40_RS22940 0.49 +0.2
735,598 + ABIE40_RS22940 0.49 -0.6
735,598 + ABIE40_RS22940 0.49 +1.0
735,598 + ABIE40_RS22940 0.49 +0.1
735,599 - ABIE40_RS22940 0.49 -0.8
735,599 - ABIE40_RS22940 0.49 +1.6
735,599 - ABIE40_RS22940 0.49 -0.9
735,599 - ABIE40_RS22940 0.49 +0.3
735,754 + ABIE40_RS22940 0.65 +1.8
735,755 - ABIE40_RS22940 0.65 -1.1
735,755 - ABIE40_RS22940 0.65 +1.7
735,757 + ABIE40_RS22940 0.65 -1.4
735,757 + ABIE40_RS22940 0.65 +1.8
735,757 + ABIE40_RS22940 0.65 -0.5
735,839 - ABIE40_RS22940 0.74 +0.6
735,991 + +0.0
735,991 + +0.0
735,991 + -1.3
735,991 + +0.9
735,992 - +0.2
735,992 - -0.5
735,992 - +1.0
735,992 - -1.3
735,992 - +2.6
736,081 + -1.5
736,081 + +1.3
736,082 - +2.5
736,082 - -0.6
736,147 + -0.1
736,147 + -1.0
736,148 - -0.1
736,148 - +0.4
736,199 - +0.2
736,199 - -0.5
736,343 - ABIE40_RS22945 0.21 -0.5
736,382 + ABIE40_RS22945 0.25 +0.1
736,382 + ABIE40_RS22945 0.25 -2.0
736,382 + ABIE40_RS22945 0.25 -0.2
736,382 + ABIE40_RS22945 0.25 -1.9
736,383 - ABIE40_RS22945 0.25 -0.9
736,383 - ABIE40_RS22945 0.25 +0.9
736,383 - ABIE40_RS22945 0.25 +1.0
736,425 - ABIE40_RS22945 0.29 -1.9
736,517 + ABIE40_RS22945 0.39 +0.4
736,517 + ABIE40_RS22945 0.39 +1.3
736,518 - ABIE40_RS22945 0.39 -1.2
736,518 - ABIE40_RS22945 0.39 -0.6
736,518 - ABIE40_RS22945 0.39 +0.9
736,648 + ABIE40_RS22945 0.53 -1.0
736,648 + ABIE40_RS22945 0.53 -1.9
736,763 + ABIE40_RS22945 0.65 +0.4
736,763 + ABIE40_RS22945 0.65 -1.0
737,000 + -0.5
737,000 + +0.0
737,316 + ABIE40_RS22950 0.20 -1.2
737,316 + ABIE40_RS22950 0.20 +0.7
737,316 + ABIE40_RS22950 0.20 -1.8
737,317 - ABIE40_RS22950 0.21 -0.7
737,317 - ABIE40_RS22950 0.21 -0.4
737,546 + ABIE40_RS22950 0.42 -1.0
737,546 + ABIE40_RS22950 0.42 -0.4
737,547 - ABIE40_RS22950 0.42 -0.1
737,547 - ABIE40_RS22950 0.42 -1.0
737,642 + ABIE40_RS22950 0.51 -1.1
737,642 + ABIE40_RS22950 0.51 -0.3
737,643 - ABIE40_RS22950 0.51 -1.9
737,643 - ABIE40_RS22950 0.51 +0.8
737,772 - ABIE40_RS22950 0.63 -0.2
737,861 + ABIE40_RS22950 0.71 +1.8
737,861 + ABIE40_RS22950 0.71 +0.8
737,870 + ABIE40_RS22950 0.72 +0.4
737,871 - ABIE40_RS22950 0.72 -2.8
737,973 + ABIE40_RS22950 0.82 +0.4
737,974 - ABIE40_RS22950 0.82 -0.3
737,974 - ABIE40_RS22950 0.82 -0.8
737,974 - ABIE40_RS22950 0.82 +0.8
737,976 - ABIE40_RS22950 0.82 -1.4
738,026 + ABIE40_RS22950 0.87 +0.0
738,026 + ABIE40_RS22950 0.87 +0.3
738,027 - ABIE40_RS22950 0.87 -0.7
738,061 - ABIE40_RS22950 0.90 +1.3

Or see this region's nucleotide sequence