Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS21835

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS21830 and ABIE40_RS21835 are separated by 147 nucleotidesABIE40_RS21835 and ABIE40_RS21840 are separated by 107 nucleotidesABIE40_RS21840 and ABIE40_RS21845 overlap by 4 nucleotides ABIE40_RS21830: ABIE40_RS21830 - EAL domain-containing protein, at 490,670 to 492,217 _RS21830 ABIE40_RS21835: ABIE40_RS21835 - hemolysin family protein, at 492,365 to 493,666 _RS21835 ABIE40_RS21840: ABIE40_RS21840 - lysophospholipid acyltransferase family protein, at 493,774 to 494,418 _RS21840 ABIE40_RS21845: ABIE40_RS21845 - phosphatidate cytidylyltransferase, at 494,415 to 495,365 _RS21845 Position (kb) 492 493 494Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 491.595 kb on - strand, within ABIE40_RS21830at 491.747 kb on - strand, within ABIE40_RS21830at 491.747 kb on - strand, within ABIE40_RS21830at 491.948 kb on + strand, within ABIE40_RS21830at 491.949 kb on - strand, within ABIE40_RS21830at 491.960 kb on + strand, within ABIE40_RS21830at 491.960 kb on + strand, within ABIE40_RS21830at 491.960 kb on + strand, within ABIE40_RS21830at 491.961 kb on - strand, within ABIE40_RS21830at 491.961 kb on - strand, within ABIE40_RS21830at 492.329 kb on - strandat 492.329 kb on - strandat 492.354 kb on - strandat 492.355 kb on + strandat 492.390 kb on + strandat 492.390 kb on + strandat 492.463 kb on + strandat 492.463 kb on + strandat 492.698 kb on + strand, within ABIE40_RS21835at 492.698 kb on + strand, within ABIE40_RS21835at 492.698 kb on + strand, within ABIE40_RS21835at 492.698 kb on + strand, within ABIE40_RS21835at 492.698 kb on + strand, within ABIE40_RS21835at 492.698 kb on + strand, within ABIE40_RS21835at 492.698 kb on + strand, within ABIE40_RS21835at 492.699 kb on - strand, within ABIE40_RS21835at 492.699 kb on - strand, within ABIE40_RS21835at 492.699 kb on - strand, within ABIE40_RS21835at 492.699 kb on - strand, within ABIE40_RS21835at 493.160 kb on + strand, within ABIE40_RS21835at 493.160 kb on + strand, within ABIE40_RS21835at 493.160 kb on + strand, within ABIE40_RS21835at 493.160 kb on + strand, within ABIE40_RS21835at 493.160 kb on + strand, within ABIE40_RS21835at 493.161 kb on - strand, within ABIE40_RS21835at 493.161 kb on - strand, within ABIE40_RS21835at 493.161 kb on - strand, within ABIE40_RS21835at 493.163 kb on + strand, within ABIE40_RS21835at 493.163 kb on + strand, within ABIE40_RS21835at 493.163 kb on + strand, within ABIE40_RS21835at 493.163 kb on + strand, within ABIE40_RS21835at 493.164 kb on - strand, within ABIE40_RS21835at 493.164 kb on - strand, within ABIE40_RS21835at 493.164 kb on - strand, within ABIE40_RS21835at 493.226 kb on - strand, within ABIE40_RS21835at 493.285 kb on + strand, within ABIE40_RS21835at 493.285 kb on + strand, within ABIE40_RS21835at 493.285 kb on + strand, within ABIE40_RS21835at 493.285 kb on + strand, within ABIE40_RS21835at 493.285 kb on + strand, within ABIE40_RS21835at 493.285 kb on + strand, within ABIE40_RS21835at 493.286 kb on - strand, within ABIE40_RS21835at 493.286 kb on - strand, within ABIE40_RS21835at 493.286 kb on - strand, within ABIE40_RS21835at 493.286 kb on - strand, within ABIE40_RS21835at 493.286 kb on - strand, within ABIE40_RS21835at 493.298 kb on + strand, within ABIE40_RS21835at 493.299 kb on - strand, within ABIE40_RS21835at 493.308 kb on - strand, within ABIE40_RS21835at 493.421 kb on + strand, within ABIE40_RS21835at 493.422 kb on - strand, within ABIE40_RS21835at 493.422 kb on - strand, within ABIE40_RS21835at 493.422 kb on - strand, within ABIE40_RS21835at 493.422 kb on - strand, within ABIE40_RS21835at 493.422 kb on - strand, within ABIE40_RS21835at 493.732 kb on + strandat 493.888 kb on + strand, within ABIE40_RS21840at 494.313 kb on + strand, within ABIE40_RS21840at 494.314 kb on - strand, within ABIE40_RS21840at 494.355 kb on + strandat 494.356 kb on - strandat 494.356 kb on - strandat 494.356 kb on - strandat 494.493 kb on + strandat 494.493 kb on + strandat 494.494 kb on - strandat 494.494 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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491,595 - ABIE40_RS21830 0.60 +0.7
491,747 - ABIE40_RS21830 0.70 +0.4
491,747 - ABIE40_RS21830 0.70 -0.1
491,948 + ABIE40_RS21830 0.83 -2.4
491,949 - ABIE40_RS21830 0.83 -2.0
491,960 + ABIE40_RS21830 0.83 -1.1
491,960 + ABIE40_RS21830 0.83 +0.2
491,960 + ABIE40_RS21830 0.83 -0.4
491,961 - ABIE40_RS21830 0.83 -0.6
491,961 - ABIE40_RS21830 0.83 -1.0
492,329 - -0.6
492,329 - -0.2
492,354 - +0.5
492,355 + +1.5
492,390 + -2.6
492,390 + -1.8
492,463 + -1.0
492,463 + -2.0
492,698 + ABIE40_RS21835 0.26 +0.8
492,698 + ABIE40_RS21835 0.26 -0.8
492,698 + ABIE40_RS21835 0.26 -0.1
492,698 + ABIE40_RS21835 0.26 -0.2
492,698 + ABIE40_RS21835 0.26 +0.4
492,698 + ABIE40_RS21835 0.26 -1.9
492,698 + ABIE40_RS21835 0.26 +1.0
492,699 - ABIE40_RS21835 0.26 -0.2
492,699 - ABIE40_RS21835 0.26 +1.8
492,699 - ABIE40_RS21835 0.26 -0.7
492,699 - ABIE40_RS21835 0.26 -1.1
493,160 + ABIE40_RS21835 0.61 +0.3
493,160 + ABIE40_RS21835 0.61 -0.9
493,160 + ABIE40_RS21835 0.61 +0.3
493,160 + ABIE40_RS21835 0.61 -0.4
493,160 + ABIE40_RS21835 0.61 -1.5
493,161 - ABIE40_RS21835 0.61 -0.7
493,161 - ABIE40_RS21835 0.61 -0.2
493,161 - ABIE40_RS21835 0.61 -0.1
493,163 + ABIE40_RS21835 0.61 -0.9
493,163 + ABIE40_RS21835 0.61 -0.5
493,163 + ABIE40_RS21835 0.61 -0.9
493,163 + ABIE40_RS21835 0.61 +0.6
493,164 - ABIE40_RS21835 0.61 -0.4
493,164 - ABIE40_RS21835 0.61 +0.2
493,164 - ABIE40_RS21835 0.61 -0.2
493,226 - ABIE40_RS21835 0.66 +2.0
493,285 + ABIE40_RS21835 0.71 +0.3
493,285 + ABIE40_RS21835 0.71 +5.2
493,285 + ABIE40_RS21835 0.71 -2.2
493,285 + ABIE40_RS21835 0.71 -0.2
493,285 + ABIE40_RS21835 0.71 -0.1
493,285 + ABIE40_RS21835 0.71 +0.1
493,286 - ABIE40_RS21835 0.71 +2.0
493,286 - ABIE40_RS21835 0.71 +0.6
493,286 - ABIE40_RS21835 0.71 -0.3
493,286 - ABIE40_RS21835 0.71 -0.2
493,286 - ABIE40_RS21835 0.71 -0.1
493,298 + ABIE40_RS21835 0.72 -0.8
493,299 - ABIE40_RS21835 0.72 +0.5
493,308 - ABIE40_RS21835 0.72 +1.3
493,421 + ABIE40_RS21835 0.81 +0.1
493,422 - ABIE40_RS21835 0.81 -0.0
493,422 - ABIE40_RS21835 0.81 -0.5
493,422 - ABIE40_RS21835 0.81 +0.2
493,422 - ABIE40_RS21835 0.81 -0.0
493,422 - ABIE40_RS21835 0.81 +1.8
493,732 + +0.2
493,888 + ABIE40_RS21840 0.18 +0.0
494,313 + ABIE40_RS21840 0.84 +1.1
494,314 - ABIE40_RS21840 0.84 +0.4
494,355 + -1.6
494,356 - -0.3
494,356 - -0.0
494,356 - +1.1
494,493 + -0.2
494,493 + -0.6
494,494 - -1.6
494,494 - -1.3

Or see this region's nucleotide sequence