Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS21510 and ABIE40_RS21515 are separated by 260 nucleotides ABIE40_RS21515 and ABIE40_RS21520 are separated by 193 nucleotides
ABIE40_RS21510: ABIE40_RS21510 - aldo/keto reductase, at 420,336 to 421,373
_RS21510
ABIE40_RS21515: ABIE40_RS21515 - SRPBCC family protein, at 421,634 to 422,077
_RS21515
ABIE40_RS21520: ABIE40_RS21520 - PAS domain-containing methyl-accepting chemotaxis protein, at 422,271 to 423,977
_RS21520
Position (kb) 421
422
423 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 420.650 kb on + strand, within ABIE40_RS21510 at 420.652 kb on + strand, within ABIE40_RS21510 at 420.653 kb on - strand, within ABIE40_RS21510 at 420.736 kb on + strand, within ABIE40_RS21510 at 420.737 kb on - strand, within ABIE40_RS21510 at 420.904 kb on + strand, within ABIE40_RS21510 at 420.905 kb on - strand, within ABIE40_RS21510 at 420.905 kb on - strand, within ABIE40_RS21510 at 420.905 kb on - strand, within ABIE40_RS21510 at 420.968 kb on + strand, within ABIE40_RS21510 at 420.968 kb on + strand, within ABIE40_RS21510 at 420.968 kb on + strand, within ABIE40_RS21510 at 420.969 kb on - strand, within ABIE40_RS21510 at 420.969 kb on - strand, within ABIE40_RS21510 at 420.969 kb on - strand, within ABIE40_RS21510 at 420.969 kb on - strand, within ABIE40_RS21510 at 420.969 kb on - strand, within ABIE40_RS21510 at 420.969 kb on - strand, within ABIE40_RS21510 at 420.969 kb on - strand, within ABIE40_RS21510 at 420.969 kb on - strand, within ABIE40_RS21510 at 420.970 kb on + strand, within ABIE40_RS21510 at 420.970 kb on + strand, within ABIE40_RS21510 at 421.030 kb on + strand, within ABIE40_RS21510 at 421.112 kb on - strand, within ABIE40_RS21510 at 421.198 kb on + strand, within ABIE40_RS21510 at 421.198 kb on + strand, within ABIE40_RS21510 at 421.198 kb on + strand, within ABIE40_RS21510 at 421.199 kb on - strand, within ABIE40_RS21510 at 421.199 kb on - strand, within ABIE40_RS21510 at 421.285 kb on + strand at 421.289 kb on + strand at 421.289 kb on + strand at 421.289 kb on + strand at 421.289 kb on + strand at 421.289 kb on + strand at 421.289 kb on + strand at 421.289 kb on + strand at 421.290 kb on - strand at 421.290 kb on - strand at 421.290 kb on - strand at 421.290 kb on - strand at 421.290 kb on - strand at 421.290 kb on - strand at 421.290 kb on - strand at 421.290 kb on - strand at 421.290 kb on - strand at 421.290 kb on - strand at 421.348 kb on - strand at 421.443 kb on + strand at 421.444 kb on - strand at 421.444 kb on - strand at 421.463 kb on + strand at 421.474 kb on - strand at 421.541 kb on + strand at 421.542 kb on - strand at 421.542 kb on - strand at 421.553 kb on + strand at 421.642 kb on + strand at 421.642 kb on + strand at 421.642 kb on + strand at 421.643 kb on - strand at 421.643 kb on - strand at 421.688 kb on + strand, within ABIE40_RS21515 at 421.688 kb on + strand, within ABIE40_RS21515 at 421.688 kb on + strand, within ABIE40_RS21515 at 421.688 kb on + strand, within ABIE40_RS21515 at 421.688 kb on + strand, within ABIE40_RS21515 at 421.689 kb on - strand, within ABIE40_RS21515 at 421.689 kb on - strand, within ABIE40_RS21515 at 421.689 kb on - strand, within ABIE40_RS21515 at 421.689 kb on - strand, within ABIE40_RS21515 at 421.689 kb on - strand, within ABIE40_RS21515 at 422.012 kb on + strand, within ABIE40_RS21515 at 422.012 kb on + strand, within ABIE40_RS21515 at 422.013 kb on - strand, within ABIE40_RS21515 at 422.013 kb on - strand, within ABIE40_RS21515 at 422.013 kb on - strand, within ABIE40_RS21515 at 422.139 kb on + strand at 422.139 kb on + strand at 422.140 kb on - strand at 422.140 kb on - strand at 422.140 kb on - strand at 422.149 kb on + strand at 422.160 kb on + strand at 422.161 kb on - strand at 422.161 kb on - strand at 422.171 kb on - strand at 422.171 kb on - strand at 422.171 kb on - strand at 422.171 kb on - strand at 422.181 kb on + strand at 422.195 kb on + strand at 422.195 kb on + strand at 422.196 kb on - strand at 422.265 kb on + strand at 422.265 kb on + strand at 422.266 kb on - strand at 422.266 kb on - strand at 422.366 kb on + strand at 422.366 kb on + strand at 422.478 kb on + strand, within ABIE40_RS21520 at 422.529 kb on + strand, within ABIE40_RS21520 at 422.577 kb on + strand, within ABIE40_RS21520 at 422.577 kb on + strand, within ABIE40_RS21520 at 422.577 kb on + strand, within ABIE40_RS21520 at 422.578 kb on - strand, within ABIE40_RS21520 at 422.578 kb on - strand, within ABIE40_RS21520 at 422.578 kb on - strand, within ABIE40_RS21520 at 422.578 kb on - strand, within ABIE40_RS21520 at 422.578 kb on - strand, within ABIE40_RS21520 at 422.578 kb on - strand, within ABIE40_RS21520 at 422.607 kb on + strand, within ABIE40_RS21520 at 422.608 kb on - strand, within ABIE40_RS21520 at 422.608 kb on - strand, within ABIE40_RS21520 at 422.841 kb on + strand, within ABIE40_RS21520 at 422.842 kb on - strand, within ABIE40_RS21520 at 422.940 kb on + strand, within ABIE40_RS21520 at 422.940 kb on + strand, within ABIE40_RS21520 at 422.940 kb on + strand, within ABIE40_RS21520 at 422.940 kb on + strand, within ABIE40_RS21520 at 422.940 kb on + strand, within ABIE40_RS21520 at 422.941 kb on - strand, within ABIE40_RS21520 at 422.941 kb on - strand, within ABIE40_RS21520 at 422.941 kb on - strand, within ABIE40_RS21520 at 422.941 kb on - strand, within ABIE40_RS21520 at 422.941 kb on - strand, within ABIE40_RS21520 at 422.941 kb on - strand, within ABIE40_RS21520 at 422.942 kb on + strand, within ABIE40_RS21520 at 422.943 kb on - strand, within ABIE40_RS21520
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 420,650 + ABIE40_RS21510 0.30 +0.3 420,652 + ABIE40_RS21510 0.30 -0.1 420,653 - ABIE40_RS21510 0.31 +0.4 420,736 + ABIE40_RS21510 0.39 +0.5 420,737 - ABIE40_RS21510 0.39 -1.4 420,904 + ABIE40_RS21510 0.55 -2.9 420,905 - ABIE40_RS21510 0.55 -0.3 420,905 - ABIE40_RS21510 0.55 +0.6 420,905 - ABIE40_RS21510 0.55 -0.2 420,968 + ABIE40_RS21510 0.61 -1.8 420,968 + ABIE40_RS21510 0.61 +1.4 420,968 + ABIE40_RS21510 0.61 -0.2 420,969 - ABIE40_RS21510 0.61 +0.4 420,969 - ABIE40_RS21510 0.61 +1.6 420,969 - ABIE40_RS21510 0.61 -0.4 420,969 - ABIE40_RS21510 0.61 +1.0 420,969 - ABIE40_RS21510 0.61 -0.9 420,969 - ABIE40_RS21510 0.61 +0.3 420,969 - ABIE40_RS21510 0.61 +2.8 420,969 - ABIE40_RS21510 0.61 +0.2 420,970 + ABIE40_RS21510 0.61 -2.0 420,970 + ABIE40_RS21510 0.61 -0.7 421,030 + ABIE40_RS21510 0.67 +0.5 421,112 - ABIE40_RS21510 0.75 +0.3 421,198 + ABIE40_RS21510 0.83 +2.1 421,198 + ABIE40_RS21510 0.83 -0.3 421,198 + ABIE40_RS21510 0.83 +3.6 421,199 - ABIE40_RS21510 0.83 +1.6 421,199 - ABIE40_RS21510 0.83 +0.6 421,285 + +0.2 421,289 + +0.4 421,289 + -0.4 421,289 + -0.7 421,289 + -1.5 421,289 + +0.7 421,289 + +2.4 421,289 + +0.5 421,290 - -1.3 421,290 - +1.6 421,290 - -0.4 421,290 - -1.3 421,290 - -2.4 421,290 - +0.8 421,290 - +0.3 421,290 - -0.5 421,290 - -0.6 421,290 - +1.3 421,348 - +0.9 421,443 + +0.2 421,444 - -0.1 421,444 - -0.3 421,463 + -0.8 421,474 - -0.2 421,541 + -2.7 421,542 - -1.3 421,542 - +0.8 421,553 + +0.6 421,642 + +3.1 421,642 + -0.0 421,642 + +2.6 421,643 - -0.2 421,643 - -1.2 421,688 + ABIE40_RS21515 0.12 -1.0 421,688 + ABIE40_RS21515 0.12 +1.3 421,688 + ABIE40_RS21515 0.12 -1.6 421,688 + ABIE40_RS21515 0.12 -0.4 421,688 + ABIE40_RS21515 0.12 -0.4 421,689 - ABIE40_RS21515 0.12 -1.0 421,689 - ABIE40_RS21515 0.12 -2.4 421,689 - ABIE40_RS21515 0.12 -1.1 421,689 - ABIE40_RS21515 0.12 -0.3 421,689 - ABIE40_RS21515 0.12 -1.9 422,012 + ABIE40_RS21515 0.85 -0.8 422,012 + ABIE40_RS21515 0.85 -0.7 422,013 - ABIE40_RS21515 0.85 -1.7 422,013 - ABIE40_RS21515 0.85 +1.1 422,013 - ABIE40_RS21515 0.85 -1.4 422,139 + +0.8 422,139 + +1.1 422,140 - +0.2 422,140 - -0.2 422,140 - -1.1 422,149 + +0.8 422,160 + -0.1 422,161 - -0.3 422,161 - -1.0 422,171 - -1.6 422,171 - -0.4 422,171 - -0.2 422,171 - -2.2 422,181 + -0.5 422,195 + +0.2 422,195 + -1.0 422,196 - +0.0 422,265 + -0.9 422,265 + +0.3 422,266 - -0.4 422,266 - +2.2 422,366 + +0.6 422,366 + -0.4 422,478 + ABIE40_RS21520 0.12 -1.7 422,529 + ABIE40_RS21520 0.15 -0.2 422,577 + ABIE40_RS21520 0.18 +1.3 422,577 + ABIE40_RS21520 0.18 -0.8 422,577 + ABIE40_RS21520 0.18 -0.3 422,578 - ABIE40_RS21520 0.18 +0.3 422,578 - ABIE40_RS21520 0.18 -0.1 422,578 - ABIE40_RS21520 0.18 -1.1 422,578 - ABIE40_RS21520 0.18 -1.0 422,578 - ABIE40_RS21520 0.18 +1.8 422,578 - ABIE40_RS21520 0.18 -0.4 422,607 + ABIE40_RS21520 0.20 -0.1 422,608 - ABIE40_RS21520 0.20 -0.1 422,608 - ABIE40_RS21520 0.20 -0.0 422,841 + ABIE40_RS21520 0.33 -0.9 422,842 - ABIE40_RS21520 0.33 +0.4 422,940 + ABIE40_RS21520 0.39 -0.4 422,940 + ABIE40_RS21520 0.39 +1.8 422,940 + ABIE40_RS21520 0.39 +0.3 422,940 + ABIE40_RS21520 0.39 +1.1 422,940 + ABIE40_RS21520 0.39 -1.1 422,941 - ABIE40_RS21520 0.39 -0.2 422,941 - ABIE40_RS21520 0.39 -0.9 422,941 - ABIE40_RS21520 0.39 -0.9 422,941 - ABIE40_RS21520 0.39 -1.5 422,941 - ABIE40_RS21520 0.39 +0.6 422,941 - ABIE40_RS21520 0.39 +0.1 422,942 + ABIE40_RS21520 0.39 +0.1 422,943 - ABIE40_RS21520 0.39 +0.8
Or see this region's nucleotide sequence