Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS20705

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS20700 and ABIE40_RS20705 are separated by 2 nucleotidesABIE40_RS20705 and ABIE40_RS20710 are separated by 27 nucleotides ABIE40_RS20700: ABIE40_RS20700 - gamma-glutamyltransferase family protein, at 249,458 to 251,242 _RS20700 ABIE40_RS20705: ABIE40_RS20705 - DUF1028 domain-containing protein, at 251,245 to 252,000 _RS20705 ABIE40_RS20710: ABIE40_RS20710 - ABC transporter ATP-binding protein, at 252,028 to 253,849 _RS20710 Position (kb) 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 250.256 kb on + strand, within ABIE40_RS20700at 250.256 kb on + strand, within ABIE40_RS20700at 250.256 kb on + strand, within ABIE40_RS20700at 250.256 kb on + strand, within ABIE40_RS20700at 250.256 kb on + strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.257 kb on - strand, within ABIE40_RS20700at 250.262 kb on + strand, within ABIE40_RS20700at 250.262 kb on + strand, within ABIE40_RS20700at 250.262 kb on + strand, within ABIE40_RS20700at 250.263 kb on - strand, within ABIE40_RS20700at 250.263 kb on - strand, within ABIE40_RS20700at 250.348 kb on + strand, within ABIE40_RS20700at 250.387 kb on + strand, within ABIE40_RS20700at 250.388 kb on - strand, within ABIE40_RS20700at 250.433 kb on + strand, within ABIE40_RS20700at 250.434 kb on - strand, within ABIE40_RS20700at 250.434 kb on - strand, within ABIE40_RS20700at 250.436 kb on + strand, within ABIE40_RS20700at 250.472 kb on + strand, within ABIE40_RS20700at 250.472 kb on + strand, within ABIE40_RS20700at 250.473 kb on - strand, within ABIE40_RS20700at 250.473 kb on - strand, within ABIE40_RS20700at 250.490 kb on + strand, within ABIE40_RS20700at 250.490 kb on + strand, within ABIE40_RS20700at 250.493 kb on - strand, within ABIE40_RS20700at 250.574 kb on + strand, within ABIE40_RS20700at 250.574 kb on + strand, within ABIE40_RS20700at 250.574 kb on + strand, within ABIE40_RS20700at 250.575 kb on - strand, within ABIE40_RS20700at 250.575 kb on - strand, within ABIE40_RS20700at 250.575 kb on - strand, within ABIE40_RS20700at 250.575 kb on - strand, within ABIE40_RS20700at 250.625 kb on + strand, within ABIE40_RS20700at 250.626 kb on - strand, within ABIE40_RS20700at 250.626 kb on - strand, within ABIE40_RS20700at 250.626 kb on - strand, within ABIE40_RS20700at 250.637 kb on - strand, within ABIE40_RS20700at 250.637 kb on - strand, within ABIE40_RS20700at 250.675 kb on + strand, within ABIE40_RS20700at 250.955 kb on + strand, within ABIE40_RS20700at 250.956 kb on - strand, within ABIE40_RS20700at 250.956 kb on - strand, within ABIE40_RS20700at 251.225 kb on + strandat 251.225 kb on + strandat 251.225 kb on + strandat 251.251 kb on + strandat 251.251 kb on + strandat 251.252 kb on - strandat 251.678 kb on + strand, within ABIE40_RS20705at 251.679 kb on - strand, within ABIE40_RS20705at 251.750 kb on - strand, within ABIE40_RS20705at 251.764 kb on + strand, within ABIE40_RS20705at 251.764 kb on + strand, within ABIE40_RS20705at 251.764 kb on + strand, within ABIE40_RS20705at 251.765 kb on - strand, within ABIE40_RS20705at 251.765 kb on - strand, within ABIE40_RS20705at 251.827 kb on + strand, within ABIE40_RS20705at 251.828 kb on - strand, within ABIE40_RS20705at 251.849 kb on - strand, within ABIE40_RS20705at 251.849 kb on - strand, within ABIE40_RS20705at 251.849 kb on - strand, within ABIE40_RS20705at 251.998 kb on + strandat 251.998 kb on + strandat 251.998 kb on + strandat 251.998 kb on + strandat 251.999 kb on - strandat 251.999 kb on - strandat 251.999 kb on - strandat 251.999 kb on - strandat 251.999 kb on - strandat 251.999 kb on - strandat 252.264 kb on + strand, within ABIE40_RS20710at 252.490 kb on + strand, within ABIE40_RS20710at 252.491 kb on - strand, within ABIE40_RS20710at 252.724 kb on + strand, within ABIE40_RS20710at 252.724 kb on + strand, within ABIE40_RS20710at 252.724 kb on + strand, within ABIE40_RS20710at 252.724 kb on + strand, within ABIE40_RS20710at 252.725 kb on - strand, within ABIE40_RS20710at 252.725 kb on - strand, within ABIE40_RS20710at 252.787 kb on + strand, within ABIE40_RS20710at 252.788 kb on - strand, within ABIE40_RS20710at 252.788 kb on - strand, within ABIE40_RS20710at 252.788 kb on - strand, within ABIE40_RS20710at 252.788 kb on - strand, within ABIE40_RS20710at 252.788 kb on - strand, within ABIE40_RS20710at 252.788 kb on - strand, within ABIE40_RS20710at 252.788 kb on - strand, within ABIE40_RS20710at 252.788 kb on - strand, within ABIE40_RS20710

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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250,256 + ABIE40_RS20700 0.45 -1.3
250,256 + ABIE40_RS20700 0.45 -0.9
250,256 + ABIE40_RS20700 0.45 +1.3
250,256 + ABIE40_RS20700 0.45 +1.0
250,256 + ABIE40_RS20700 0.45 -1.2
250,257 - ABIE40_RS20700 0.45 -0.4
250,257 - ABIE40_RS20700 0.45 -2.1
250,257 - ABIE40_RS20700 0.45 -0.4
250,257 - ABIE40_RS20700 0.45 +0.1
250,257 - ABIE40_RS20700 0.45 +0.4
250,257 - ABIE40_RS20700 0.45 -1.8
250,262 + ABIE40_RS20700 0.45 +0.5
250,262 + ABIE40_RS20700 0.45 +1.2
250,262 + ABIE40_RS20700 0.45 -1.7
250,263 - ABIE40_RS20700 0.45 +0.0
250,263 - ABIE40_RS20700 0.45 -1.4
250,348 + ABIE40_RS20700 0.50 -0.3
250,387 + ABIE40_RS20700 0.52 +0.1
250,388 - ABIE40_RS20700 0.52 -1.7
250,433 + ABIE40_RS20700 0.55 +0.7
250,434 - ABIE40_RS20700 0.55 -1.0
250,434 - ABIE40_RS20700 0.55 -0.4
250,436 + ABIE40_RS20700 0.55 -1.2
250,472 + ABIE40_RS20700 0.57 -0.6
250,472 + ABIE40_RS20700 0.57 +0.1
250,473 - ABIE40_RS20700 0.57 +0.7
250,473 - ABIE40_RS20700 0.57 +1.2
250,490 + ABIE40_RS20700 0.58 +0.5
250,490 + ABIE40_RS20700 0.58 -2.3
250,493 - ABIE40_RS20700 0.58 -0.2
250,574 + ABIE40_RS20700 0.63 +0.6
250,574 + ABIE40_RS20700 0.63 +0.4
250,574 + ABIE40_RS20700 0.63 -3.1
250,575 - ABIE40_RS20700 0.63 -1.3
250,575 - ABIE40_RS20700 0.63 +2.1
250,575 - ABIE40_RS20700 0.63 -0.0
250,575 - ABIE40_RS20700 0.63 -0.5
250,625 + ABIE40_RS20700 0.65 +0.1
250,626 - ABIE40_RS20700 0.65 +2.6
250,626 - ABIE40_RS20700 0.65 -0.1
250,626 - ABIE40_RS20700 0.65 -0.5
250,637 - ABIE40_RS20700 0.66 -0.0
250,637 - ABIE40_RS20700 0.66 -0.5
250,675 + ABIE40_RS20700 0.68 +0.2
250,955 + ABIE40_RS20700 0.84 +0.8
250,956 - ABIE40_RS20700 0.84 -2.9
250,956 - ABIE40_RS20700 0.84 -0.2
251,225 + -2.0
251,225 + -0.9
251,225 + -1.9
251,251 + -0.5
251,251 + -1.6
251,252 - -0.5
251,678 + ABIE40_RS20705 0.57 -0.4
251,679 - ABIE40_RS20705 0.57 +3.0
251,750 - ABIE40_RS20705 0.67 +0.3
251,764 + ABIE40_RS20705 0.69 -2.3
251,764 + ABIE40_RS20705 0.69 -0.7
251,764 + ABIE40_RS20705 0.69 +2.7
251,765 - ABIE40_RS20705 0.69 +0.6
251,765 - ABIE40_RS20705 0.69 -0.5
251,827 + ABIE40_RS20705 0.77 +0.1
251,828 - ABIE40_RS20705 0.77 -1.2
251,849 - ABIE40_RS20705 0.80 +1.3
251,849 - ABIE40_RS20705 0.80 +4.0
251,849 - ABIE40_RS20705 0.80 -0.8
251,998 + +1.5
251,998 + +0.5
251,998 + -1.5
251,998 + -0.4
251,999 - -2.3
251,999 - -0.1
251,999 - +1.7
251,999 - -0.7
251,999 - -0.9
251,999 - +0.9
252,264 + ABIE40_RS20710 0.13 +0.9
252,490 + ABIE40_RS20710 0.25 +0.4
252,491 - ABIE40_RS20710 0.25 +0.4
252,724 + ABIE40_RS20710 0.38 -0.3
252,724 + ABIE40_RS20710 0.38 +2.4
252,724 + ABIE40_RS20710 0.38 +0.4
252,724 + ABIE40_RS20710 0.38 +1.1
252,725 - ABIE40_RS20710 0.38 +0.1
252,725 - ABIE40_RS20710 0.38 -0.5
252,787 + ABIE40_RS20710 0.42 -0.0
252,788 - ABIE40_RS20710 0.42 -0.2
252,788 - ABIE40_RS20710 0.42 -0.3
252,788 - ABIE40_RS20710 0.42 -0.9
252,788 - ABIE40_RS20710 0.42 +0.5
252,788 - ABIE40_RS20710 0.42 -0.3
252,788 - ABIE40_RS20710 0.42 +0.3
252,788 - ABIE40_RS20710 0.42 -0.8
252,788 - ABIE40_RS20710 0.42 +0.8

Or see this region's nucleotide sequence