Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS12100

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
2,358,152	+		ABIE40_RS12090	0.88	-2.0
2,358,205	+				-0.2
2,358,230	+				-0.9
2,358,230	+				-1.9
2,358,231	-				+2.3
2,358,333	+				-0.4
2,358,333	+				-1.6
2,358,334	-				+0.1
2,358,334	-				-1.4
2,358,334	-				-1.2
2,358,334	-				+0.8
2,358,334	-				-0.0
2,358,567	+		ABIE40_RS12095	0.34	-1.7
2,358,567	+		ABIE40_RS12095	0.34	+0.6
2,358,567	+		ABIE40_RS12095	0.34	-1.1
2,358,568	-		ABIE40_RS12095	0.34	+3.0
2,358,670	+		ABIE40_RS12095	0.47	-0.6
2,358,671	-		ABIE40_RS12095	0.47	-0.6
2,358,672	+		ABIE40_RS12095	0.47	-0.2
2,358,672	+		ABIE40_RS12095	0.47	-0.0
2,358,672	+		ABIE40_RS12095	0.47	+0.8
2,358,697	+		ABIE40_RS12095	0.50	+1.6
2,358,780	+		ABIE40_RS12095	0.60	+0.2
2,358,780	+		ABIE40_RS12095	0.60	-1.0
2,358,780	+		ABIE40_RS12095	0.60	+1.7
2,358,780	+		ABIE40_RS12095	0.60	-0.1
2,358,781	-		ABIE40_RS12095	0.60	+0.7
2,358,796	+		ABIE40_RS12095	0.61	+0.6
2,358,796	+		ABIE40_RS12095	0.61	+2.4
2,358,797	-		ABIE40_RS12095	0.62	-0.9
2,358,797	-		ABIE40_RS12095	0.62	+0.3
2,358,812	+		ABIE40_RS12095	0.63	-0.2
2,358,900	+		ABIE40_RS12095	0.74	-1.3
2,358,900	+		ABIE40_RS12095	0.74	-2.4
2,359,174	+				-0.6
2,359,174	+				+0.6
2,359,174	+				+0.2
2,359,174	+				-0.4
2,359,201	+				-0.4
2,359,276	+		ABIE40_RS12100	0.15	-2.3
2,359,307	+		ABIE40_RS12100	0.19	+0.9
2,359,308	-		ABIE40_RS12100	0.19	+0.6
2,359,340	-		ABIE40_RS12100	0.22	-1.0
2,359,340	-		ABIE40_RS12100	0.22	-0.5
2,359,494	-		ABIE40_RS12100	0.38	-2.4
2,359,507	+		ABIE40_RS12100	0.40	+0.7
2,359,507	+		ABIE40_RS12100	0.40	+0.5
2,359,507	+		ABIE40_RS12100	0.40	-1.4
2,359,532	+		ABIE40_RS12100	0.42	+1.2
2,359,532	+		ABIE40_RS12100	0.42	+1.0
2,359,533	-		ABIE40_RS12100	0.43	+0.5
2,359,534	+		ABIE40_RS12100	0.43	-2.1
2,359,534	+		ABIE40_RS12100	0.43	+0.4
2,359,535	-		ABIE40_RS12100	0.43	-0.8
2,359,535	-		ABIE40_RS12100	0.43	+0.7
2,359,535	-		ABIE40_RS12100	0.43	+3.3
2,359,535	-		ABIE40_RS12100	0.43	-1.4
2,359,729	+		ABIE40_RS12100	0.63	-1.3
2,359,729	+		ABIE40_RS12100	0.63	+1.7
2,359,729	+		ABIE40_RS12100	0.63	-1.6
2,359,729	+		ABIE40_RS12100	0.63	+1.1
2,359,888	+		ABIE40_RS12100	0.80	+0.4
2,359,888	+		ABIE40_RS12100	0.80	-0.4
2,359,888	+		ABIE40_RS12100	0.80	-0.0
2,359,889	-		ABIE40_RS12100	0.80	+0.7
2,359,889	-		ABIE40_RS12100	0.80	-1.4
2,359,889	-		ABIE40_RS12100	0.80	+0.2
2,359,889	-		ABIE40_RS12100	0.80	-0.4
2,359,933	+		ABIE40_RS12100	0.85	-0.1
2,359,934	-		ABIE40_RS12100	0.85	-1.1
2,359,934	-		ABIE40_RS12100	0.85	-0.8
2,359,984	+				-0.6
2,360,089	-				-0.4
2,360,089	-				+1.7
2,360,094	+				+0.2
2,360,094	+				-0.3
2,360,094	+				-0.7
2,360,095	-				-0.6
2,360,095	-				-0.6
2,360,322	+				+0.3
2,360,323	-				+0.4
2,360,337	+				+0.9
2,360,337	+				+1.4
2,360,337	+				-1.0
2,360,337	+				+1.0
2,360,337	+				+0.6
2,360,338	-				-0.1
2,360,338	-				+1.4
2,360,338	-				-0.6
2,360,466	+		ABIE40_RS12105	0.12	-0.4
2,360,467	-		ABIE40_RS12105	0.12	-1.1
2,360,467	-		ABIE40_RS12105	0.12	+0.5
2,360,467	-		ABIE40_RS12105	0.12	+0.2
2,360,491	-		ABIE40_RS12105	0.13	-0.2
2,360,586	+		ABIE40_RS12105	0.21	-0.1
2,360,586	+		ABIE40_RS12105	0.21	+1.4
2,360,587	-		ABIE40_RS12105	0.21	+1.7
2,360,587	-		ABIE40_RS12105	0.21	-2.1
2,360,587	-		ABIE40_RS12105	0.21	+1.7
2,360,587	-		ABIE40_RS12105	0.21	+0.2
2,360,587	-		ABIE40_RS12105	0.21	-0.4
2,360,697	+		ABIE40_RS12105	0.30	+0.0
2,360,697	+		ABIE40_RS12105	0.30	-2.8
2,360,697	+		ABIE40_RS12105	0.30	-0.7
2,360,697	+		ABIE40_RS12105	0.30	+0.0
2,360,697	+		ABIE40_RS12105	0.30	-1.8
2,360,697	+		ABIE40_RS12105	0.30	+0.9
2,360,697	+		ABIE40_RS12105	0.30	+2.0
2,360,697	+		ABIE40_RS12105	0.30	+0.0
2,360,698	-		ABIE40_RS12105	0.30	+0.7
2,360,698	-		ABIE40_RS12105	0.30	-1.4
2,360,698	-		ABIE40_RS12105	0.30	+0.6
2,360,698	-		ABIE40_RS12105	0.30	+0.2
2,360,698	-		ABIE40_RS12105	0.30	+2.3
2,360,796	+		ABIE40_RS12105	0.38	+1.4
2,360,797	-		ABIE40_RS12105	0.38	-0.7
2,360,797	-		ABIE40_RS12105	0.38	-0.4
2,360,841	+		ABIE40_RS12105	0.41	-0.4
2,360,842	-		ABIE40_RS12105	0.41	-1.6
2,360,842	-		ABIE40_RS12105	0.41	-0.6
2,360,871	+		ABIE40_RS12105	0.44	-1.5
2,360,872	-		ABIE40_RS12105	0.44	-1.6
2,360,872	-		ABIE40_RS12105	0.44	-2.4
2,360,899	-		ABIE40_RS12105	0.46	-1.5
2,360,976	+		ABIE40_RS12105	0.52	-1.1
2,360,977	-		ABIE40_RS12105	0.52	-0.4
2,360,977	-		ABIE40_RS12105	0.52	+0.0
2,360,977	-		ABIE40_RS12105	0.52	+1.2
2,360,997	+		ABIE40_RS12105	0.54	-2.6
2,361,051	+		ABIE40_RS12105	0.58	-0.9
2,361,051	+		ABIE40_RS12105	0.58	-1.0
2,361,051	+		ABIE40_RS12105	0.58	-1.1
2,361,051	+		ABIE40_RS12105	0.58	-1.4
2,361,051	+		ABIE40_RS12105	0.58	-0.2
2,361,051	+		ABIE40_RS12105	0.58	-0.9
2,361,051	+		ABIE40_RS12105	0.58	+0.2
2,361,051	+		ABIE40_RS12105	0.58	+0.5
2,361,051	+		ABIE40_RS12105	0.58	+0.2
2,361,051	+		ABIE40_RS12105	0.58	+1.0
2,361,051	+		ABIE40_RS12105	0.58	-0.2
2,361,052	-		ABIE40_RS12105	0.58	-0.9
2,361,052	-		ABIE40_RS12105	0.58	+1.9
2,361,052	-		ABIE40_RS12105	0.58	-0.8
2,361,052	-		ABIE40_RS12105	0.58	+0.4
2,361,052	-		ABIE40_RS12105	0.58	+0.3