Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS09235

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
1,775,956	-				-0.7
1,775,970	-				-0.5
1,775,970	-				-0.9
1,775,970	-				-0.9
1,775,970	-				-1.8
1,776,029	+				-1.6
1,776,029	+				-0.4
1,776,029	+				-1.8
1,776,030	-				-0.8
1,776,030	-				-1.1
1,776,030	-				+0.4
1,776,030	-				+1.7
1,776,107	+				-0.8
1,776,107	+				+0.5
1,776,107	+				-1.9
1,776,107	+				-1.1
1,776,107	+				-0.2
1,776,107	+				+0.4
1,776,107	+				-0.6
1,776,107	+				-0.6
1,776,107	+				-1.4
1,776,107	+				-0.3
1,776,108	-				+2.1
1,776,108	-				-1.1
1,776,108	-				+0.4
1,776,108	-				-1.5
1,776,108	-				+1.2
1,776,108	-				+0.3
1,776,108	-				-0.1
1,776,108	-				+1.3
1,776,108	-				-0.3
1,776,108	-				-1.9
1,776,108	-				-2.3
1,776,215	+				-0.9
1,776,223	+				-0.9
1,776,419	+		ABIE40_RS09230	0.35	+0.4
1,776,420	-		ABIE40_RS09230	0.35	+0.7
1,776,428	+		ABIE40_RS09230	0.36	-0.1
1,776,428	+		ABIE40_RS09230	0.36	-1.6
1,776,428	+		ABIE40_RS09230	0.36	+1.0
1,776,428	+		ABIE40_RS09230	0.36	+2.3
1,776,428	+		ABIE40_RS09230	0.36	+1.4
1,776,428	+		ABIE40_RS09230	0.36	-1.3
1,776,429	-		ABIE40_RS09230	0.36	-0.9
1,776,429	-		ABIE40_RS09230	0.36	+0.6
1,776,429	-		ABIE40_RS09230	0.36	+0.7
1,776,455	+		ABIE40_RS09230	0.40	+0.5
1,776,455	+		ABIE40_RS09230	0.40	-0.2
1,776,527	+		ABIE40_RS09230	0.50	-1.0
1,776,527	+		ABIE40_RS09230	0.50	+2.0
1,776,527	+		ABIE40_RS09230	0.50	-0.5
1,776,527	+		ABIE40_RS09230	0.50	+0.4
1,776,527	+		ABIE40_RS09230	0.50	-2.4
1,776,527	+		ABIE40_RS09230	0.50	+0.8
1,776,527	+		ABIE40_RS09230	0.50	-2.1
1,776,528	-		ABIE40_RS09230	0.50	-1.5
1,776,528	-		ABIE40_RS09230	0.50	+0.1
1,776,528	-		ABIE40_RS09230	0.50	-1.7
1,776,528	-		ABIE40_RS09230	0.50	-0.3
1,776,528	-		ABIE40_RS09230	0.50	+1.2
1,776,528	-		ABIE40_RS09230	0.50	+2.1
1,776,530	+		ABIE40_RS09230	0.50	-0.4
1,776,530	+		ABIE40_RS09230	0.50	+2.7
1,776,530	+		ABIE40_RS09230	0.50	-0.6
1,776,530	+		ABIE40_RS09230	0.50	-1.0
1,776,531	-		ABIE40_RS09230	0.50	+0.1
1,776,544	+		ABIE40_RS09230	0.52	+0.5
1,776,560	+		ABIE40_RS09230	0.54	+0.7
1,776,560	+		ABIE40_RS09230	0.54	-1.5
1,776,560	+		ABIE40_RS09230	0.54	+0.0
1,776,767	+		ABIE40_RS09230	0.83	+1.5
1,776,768	-		ABIE40_RS09230	0.83	-1.6
1,776,768	-		ABIE40_RS09230	0.83	-0.2
1,776,768	-		ABIE40_RS09230	0.83	+3.0
1,776,768	-		ABIE40_RS09230	0.83	-0.8
1,776,829	+				+1.4
1,776,829	+				-1.3
1,776,833	+				-1.1
1,776,833	+				+0.4
1,776,833	+				-0.4
1,776,833	+				+0.4
1,776,833	+				+0.1
1,776,833	+				+0.2
1,776,833	+				+1.0
1,776,834	-				+1.5
1,776,834	-				-1.3
1,776,834	-				-1.2
1,776,834	-				-1.9
1,776,839	+				+1.7
1,776,840	-				-0.1
1,776,890	+				+0.7
1,776,891	-				-1.6
1,776,891	-				+0.5
1,776,960	+				+0.3
1,776,960	+				-1.1
1,776,960	+				+0.5
1,776,960	+				-0.4
1,776,960	+				-0.1
1,776,960	+				-0.5
1,776,961	-				-0.9
1,776,961	-				-1.3
1,776,961	-				+0.5
1,776,961	-				+0.7
1,776,961	-				-0.5
1,776,961	-				-0.8
1,777,044	+		ABIE40_RS09235	0.14	+0.1
1,777,044	+		ABIE40_RS09235	0.14	-0.8
1,777,044	+		ABIE40_RS09235	0.14	-0.1
1,777,062	+		ABIE40_RS09235	0.16	+1.2
1,777,062	+		ABIE40_RS09235	0.16	+1.7
1,777,062	+		ABIE40_RS09235	0.16	-0.0
1,777,062	+		ABIE40_RS09235	0.16	-0.4
1,777,062	+		ABIE40_RS09235	0.16	+0.7
1,777,063	-		ABIE40_RS09235	0.16	-1.1
1,777,063	-		ABIE40_RS09235	0.16	-0.5
1,777,063	-		ABIE40_RS09235	0.16	-0.1
1,777,063	-		ABIE40_RS09235	0.16	-1.9
1,777,063	-		ABIE40_RS09235	0.16	-1.9
1,777,063	-		ABIE40_RS09235	0.16	-1.1
1,777,167	+		ABIE40_RS09235	0.27	-1.1
1,777,167	+		ABIE40_RS09235	0.27	+0.2
1,777,168	-		ABIE40_RS09235	0.27	-2.0
1,777,188	+		ABIE40_RS09235	0.29	+0.1
1,777,188	+		ABIE40_RS09235	0.29	-0.9
1,777,189	-		ABIE40_RS09235	0.29	-2.3
1,777,189	-		ABIE40_RS09235	0.29	-1.0
1,777,190	+		ABIE40_RS09235	0.29	-1.0
1,777,190	+		ABIE40_RS09235	0.29	+2.0
1,777,190	+		ABIE40_RS09235	0.29	+0.7
1,777,191	-		ABIE40_RS09235	0.29	-0.4
1,777,293	+		ABIE40_RS09235	0.40	-0.1
1,777,293	+		ABIE40_RS09235	0.40	+0.6
1,777,294	-		ABIE40_RS09235	0.40	-0.9
1,777,294	-		ABIE40_RS09235	0.40	-0.9
1,777,294	-		ABIE40_RS09235	0.40	-0.1
1,777,294	-		ABIE40_RS09235	0.40	-1.5
1,777,479	+		ABIE40_RS09235	0.59	-0.8
1,777,479	+		ABIE40_RS09235	0.59	-0.8
1,777,480	-		ABIE40_RS09235	0.59	-0.4
1,777,480	-		ABIE40_RS09235	0.59	+0.1
1,777,480	-		ABIE40_RS09235	0.59	+0.2
1,777,545	+		ABIE40_RS09235	0.65	+2.7
1,777,545	+		ABIE40_RS09235	0.65	-0.3
1,777,545	+		ABIE40_RS09235	0.65	+1.1
1,777,545	+		ABIE40_RS09235	0.65	-2.4
1,777,546	-		ABIE40_RS09235	0.66	-0.1
1,777,546	-		ABIE40_RS09235	0.66	+0.1
1,777,546	-		ABIE40_RS09235	0.66	-1.4
1,777,710	+		ABIE40_RS09235	0.82	-1.0
1,777,710	+		ABIE40_RS09235	0.82	-2.3
1,777,733	+		ABIE40_RS09235	0.85	-1.4
1,777,733	+		ABIE40_RS09235	0.85	-2.0
1,777,734	-		ABIE40_RS09235	0.85	-1.5
1,777,784	+		ABIE40_RS09235	0.90	-0.3
1,777,784	+		ABIE40_RS09235	0.90	+0.7
1,777,785	-		ABIE40_RS09235	0.90	+0.3
1,777,790	+				-0.3
1,777,790	+				-1.5
1,777,790	+				-0.3
1,777,810	+				+1.0
1,777,811	-				-0.6
1,777,865	+				-0.0
1,777,865	+				+0.4
1,777,865	+				+0.4
1,777,865	+				-2.2
1,777,865	+				+0.3
1,777,865	+				-2.0
1,777,866	-				-0.6
1,777,866	-				-0.8
1,777,866	-				+0.8
1,777,965	-				-0.3
1,777,965	-				-0.5
1,777,965	-				+1.7
1,778,033	+				+1.1
1,778,034	-				+1.5
1,778,251	-		ABIE40_RS09240	0.20	-3.0
1,778,364	+		ABIE40_RS09240	0.28	+0.1
1,778,524	+		ABIE40_RS09240	0.38	+0.9
1,778,524	+		ABIE40_RS09240	0.38	+0.3
1,778,524	+		ABIE40_RS09240	0.38	-0.6
1,778,525	-		ABIE40_RS09240	0.38	+0.5
1,778,525	-		ABIE40_RS09240	0.38	+0.1
1,778,525	-		ABIE40_RS09240	0.38	-0.3
1,778,525	-		ABIE40_RS09240	0.38	+1.0
1,778,525	-		ABIE40_RS09240	0.38	-0.1
1,778,525	-		ABIE40_RS09240	0.38	+0.3
1,778,525	-		ABIE40_RS09240	0.38	-0.3
1,778,526	+		ABIE40_RS09240	0.38	+1.7
1,778,526	+		ABIE40_RS09240	0.38	-0.8
1,778,527	-		ABIE40_RS09240	0.38	+0.4
1,778,527	-		ABIE40_RS09240	0.38	+0.8
1,778,742	+		ABIE40_RS09240	0.52	-1.7
1,778,863	+		ABIE40_RS09240	0.59	+0.4
1,778,863	+		ABIE40_RS09240	0.59	-0.3