Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS05450

Experiment: D-Lactate (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Lactate (C)
1,067,508	+		ABIE40_RS05445	0.53	-1.2
1,067,509	-		ABIE40_RS05445	0.53	-0.1
1,067,509	-		ABIE40_RS05445	0.53	-0.8
1,067,509	-		ABIE40_RS05445	0.53	+2.4
1,067,509	-		ABIE40_RS05445	0.53	-0.1
1,068,164	+		ABIE40_RS05445	0.89	-0.7
1,068,371	+				+0.7
1,068,371	+				-1.1
1,068,372	-				+3.1
1,068,374	+				-0.8
1,068,374	+				+0.5
1,068,374	+				-1.7
1,068,375	-				-0.8
1,068,661	+		ABIE40_RS05450	0.25	-1.6
1,068,661	+		ABIE40_RS05450	0.25	+1.0
1,068,661	+		ABIE40_RS05450	0.25	-0.2
1,068,661	+		ABIE40_RS05450	0.25	-0.9
1,068,661	+		ABIE40_RS05450	0.25	-0.6
1,068,661	+		ABIE40_RS05450	0.25	-0.5
1,068,661	+		ABIE40_RS05450	0.25	+1.8
1,068,661	+		ABIE40_RS05450	0.25	+0.9
1,068,661	+		ABIE40_RS05450	0.25	-0.7
1,068,662	-		ABIE40_RS05450	0.25	+3.8
1,068,662	-		ABIE40_RS05450	0.25	+0.1
1,068,662	-		ABIE40_RS05450	0.25	-0.3
1,068,662	-		ABIE40_RS05450	0.25	-0.7
1,068,662	-		ABIE40_RS05450	0.25	-1.0
1,068,662	-		ABIE40_RS05450	0.25	+0.4
1,068,662	-		ABIE40_RS05450	0.25	-0.6
1,068,662	-		ABIE40_RS05450	0.25	-2.0
1,068,662	-		ABIE40_RS05450	0.25	+0.9
1,068,665	+		ABIE40_RS05450	0.25	-0.3
1,068,665	+		ABIE40_RS05450	0.25	-0.5
1,068,665	+		ABIE40_RS05450	0.25	+0.4
1,068,665	+		ABIE40_RS05450	0.25	-2.0
1,068,665	+		ABIE40_RS05450	0.25	-0.8
1,068,665	+		ABIE40_RS05450	0.25	-1.1
1,068,665	+		ABIE40_RS05450	0.25	-0.8
1,068,665	+		ABIE40_RS05450	0.25	-0.1
1,068,665	+		ABIE40_RS05450	0.25	-1.3
1,068,665	+		ABIE40_RS05450	0.25	-0.3
1,068,665	+		ABIE40_RS05450	0.25	+0.0
1,068,666	-		ABIE40_RS05450	0.25	-0.4
1,068,666	-		ABIE40_RS05450	0.25	-1.5
1,068,666	-		ABIE40_RS05450	0.25	-1.5
1,068,666	-		ABIE40_RS05450	0.25	-0.2
1,068,666	-		ABIE40_RS05450	0.25	-0.3
1,068,666	-		ABIE40_RS05450	0.25	+0.3
1,068,666	-		ABIE40_RS05450	0.25	+0.8
1,068,666	-		ABIE40_RS05450	0.25	-0.8
1,068,666	-		ABIE40_RS05450	0.25	+4.1
1,068,666	-		ABIE40_RS05450	0.25	+0.8
1,068,666	-		ABIE40_RS05450	0.25	-1.1
1,068,666	-		ABIE40_RS05450	0.25	-0.1
1,068,666	-		ABIE40_RS05450	0.25	-3.0
1,068,666	-		ABIE40_RS05450	0.25	+0.3
1,068,666	-		ABIE40_RS05450	0.25	+1.1
1,068,666	-		ABIE40_RS05450	0.25	+0.5
1,068,720	-		ABIE40_RS05450	0.31	-0.1
1,068,782	+		ABIE40_RS05450	0.38	-1.1
1,068,783	-		ABIE40_RS05450	0.38	+1.5
1,068,783	-		ABIE40_RS05450	0.38	-0.3
1,068,853	-		ABIE40_RS05450	0.46	-0.5
1,069,369	+				-0.0
1,069,370	-				+0.9
1,069,370	-				-0.8
1,069,371	+				+0.3
1,069,371	+				-0.2
1,069,372	-				-0.8
1,069,542	-		ABIE40_RS05455	0.45	-0.7
1,069,565	+		ABIE40_RS05455	0.56	-2.5
1,069,565	+		ABIE40_RS05455	0.56	-0.3
1,069,604	+		ABIE40_RS05455	0.74	-1.5
1,069,658	+				-1.1
1,069,809	+		ABIE40_RS05460	0.27	-0.9
1,069,809	+		ABIE40_RS05460	0.27	+1.5
1,069,810	-		ABIE40_RS05460	0.28	-0.7
1,069,816	+		ABIE40_RS05460	0.29	-0.8
1,069,816	+		ABIE40_RS05460	0.29	-0.5
1,069,816	+		ABIE40_RS05460	0.29	-2.4
1,069,817	-		ABIE40_RS05460	0.29	-0.5
1,069,817	-		ABIE40_RS05460	0.29	+0.2
1,069,817	-		ABIE40_RS05460	0.29	-0.0
1,069,817	-		ABIE40_RS05460	0.29	-1.0
1,069,817	-		ABIE40_RS05460	0.29	-1.7
1,069,817	-		ABIE40_RS05460	0.29	-0.6
1,069,843	-		ABIE40_RS05460	0.36	+0.2
1,069,843	-		ABIE40_RS05460	0.36	-2.3
1,069,843	-		ABIE40_RS05460	0.36	-1.1
1,069,843	-		ABIE40_RS05460	0.36	+1.1
1,069,843	-		ABIE40_RS05460	0.36	+3.1
1,069,843	-		ABIE40_RS05460	0.36	-0.7
1,069,843	-		ABIE40_RS05460	0.36	+0.3
1,069,843	-		ABIE40_RS05460	0.36	-0.1
1,069,983	+		ABIE40_RS05460	0.73	-2.6
1,069,983	+		ABIE40_RS05460	0.73	+0.3
1,069,984	-		ABIE40_RS05460	0.74	+0.1
1,070,056	+				+0.8
1,070,062	+				-1.7
1,070,062	+				-0.5
1,070,062	+				+0.7
1,070,062	+				+0.8
1,070,062	+				-0.1
1,070,062	+				+0.5
1,070,062	+				-0.1
1,070,063	-				-2.1
1,070,063	-				+0.1
1,070,063	-				-1.0
1,070,063	-				+1.2
1,070,063	-				+1.3
1,070,064	+				+0.5
1,070,064	+				+1.5
1,070,064	+				-0.6
1,070,064	+				+0.1
1,070,064	+				-0.2
1,070,064	+				-2.0
1,070,064	+				+0.7
1,070,064	+				+5.1
1,070,065	-				+1.1
1,070,065	-				-0.7
1,070,065	-				-0.6
1,070,065	-				-0.0
1,070,065	-				-1.1
1,070,065	-				-3.1
1,070,111	+				-0.8
1,070,111	+				+0.1
1,070,112	-				-1.5
1,070,112	-				-0.6
1,070,112	-				+0.9
1,070,112	-				+0.7
1,070,155	+				-0.3
1,070,155	+				+3.8
1,070,230	+				+0.3
1,070,231	-				+0.5
1,070,231	-				-0.3
1,070,231	-				-0.2
1,070,247	-		ABIE40_RS05465	0.10	+0.1
1,070,247	-		ABIE40_RS05465	0.10	-0.1
1,070,247	-		ABIE40_RS05465	0.10	+0.7
1,070,248	+		ABIE40_RS05465	0.10	-0.5
1,070,249	-		ABIE40_RS05465	0.10	-0.0
1,070,249	-		ABIE40_RS05465	0.10	-0.7
1,070,249	-		ABIE40_RS05465	0.10	-0.8
1,070,249	-		ABIE40_RS05465	0.10	-0.5
1,070,249	-		ABIE40_RS05465	0.10	-1.5
1,070,249	-		ABIE40_RS05465	0.10	-0.9
1,070,249	-		ABIE40_RS05465	0.10	+1.1
1,070,251	+		ABIE40_RS05465	0.11	-0.4
1,070,251	+		ABIE40_RS05465	0.11	+0.1
1,070,252	-		ABIE40_RS05465	0.11	-1.4
1,070,342	-		ABIE40_RS05465	0.21	-2.6
1,070,342	-		ABIE40_RS05465	0.21	-1.0