Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS05070 and ABIE40_RS05075 are separated by 20 nucleotides ABIE40_RS05075 and ABIE40_RS05080 are separated by 78 nucleotides ABIE40_RS05080 and ABIE40_RS05085 are separated by 28 nucleotides ABIE40_RS05085 and ABIE40_RS05090 are separated by 156 nucleotides
ABIE40_RS05070: ABIE40_RS05070 - haloacid dehalogenase type II, at 990,482 to 991,183
_RS05070
ABIE40_RS05075: ABIE40_RS05075 - aldolase, at 991,204 to 991,995
_RS05075
ABIE40_RS05080: ABIE40_RS05080 - hypothetical protein, at 992,074 to 993,282
_RS05080
ABIE40_RS05085: ABIE40_RS05085 - NAD(+)--rifampin ADP-ribosyltransferase, at 993,311 to 993,733
_RS05085
ABIE40_RS05090: ABIE40_RS05090 - DUF2721 domain-containing protein, at 993,890 to 994,336
_RS05090
Position (kb) 992
993
994 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 991.112 kb on + strand, within ABIE40_RS05070 at 991.181 kb on + strand at 991.181 kb on + strand at 991.181 kb on + strand at 991.181 kb on + strand at 991.182 kb on - strand at 991.182 kb on - strand at 991.182 kb on - strand at 991.393 kb on - strand, within ABIE40_RS05075 at 991.507 kb on + strand, within ABIE40_RS05075 at 991.507 kb on + strand, within ABIE40_RS05075 at 991.507 kb on + strand, within ABIE40_RS05075 at 991.507 kb on + strand, within ABIE40_RS05075 at 991.508 kb on - strand, within ABIE40_RS05075 at 991.508 kb on - strand, within ABIE40_RS05075 at 991.508 kb on - strand, within ABIE40_RS05075 at 991.508 kb on - strand, within ABIE40_RS05075 at 991.508 kb on - strand, within ABIE40_RS05075 at 991.508 kb on - strand, within ABIE40_RS05075 at 991.566 kb on + strand, within ABIE40_RS05075 at 991.566 kb on + strand, within ABIE40_RS05075 at 991.566 kb on + strand, within ABIE40_RS05075 at 991.567 kb on - strand, within ABIE40_RS05075 at 991.669 kb on + strand, within ABIE40_RS05075 at 991.669 kb on + strand, within ABIE40_RS05075 at 991.669 kb on + strand, within ABIE40_RS05075 at 991.669 kb on + strand, within ABIE40_RS05075 at 991.669 kb on + strand, within ABIE40_RS05075 at 991.669 kb on + strand, within ABIE40_RS05075 at 991.669 kb on + strand, within ABIE40_RS05075 at 991.669 kb on + strand, within ABIE40_RS05075 at 991.670 kb on - strand, within ABIE40_RS05075 at 991.804 kb on + strand, within ABIE40_RS05075 at 991.804 kb on + strand, within ABIE40_RS05075 at 991.804 kb on + strand, within ABIE40_RS05075 at 991.804 kb on + strand, within ABIE40_RS05075 at 991.804 kb on + strand, within ABIE40_RS05075 at 991.804 kb on + strand, within ABIE40_RS05075 at 991.805 kb on - strand, within ABIE40_RS05075 at 991.807 kb on + strand, within ABIE40_RS05075 at 991.808 kb on - strand, within ABIE40_RS05075 at 991.969 kb on - strand at 992.047 kb on - strand at 992.111 kb on + strand at 992.111 kb on + strand at 992.112 kb on - strand at 992.112 kb on - strand at 992.112 kb on - strand at 992.112 kb on - strand at 992.112 kb on - strand at 992.112 kb on - strand at 992.112 kb on - strand at 992.169 kb on + strand at 992.169 kb on + strand at 992.169 kb on + strand at 992.169 kb on + strand at 992.169 kb on + strand at 992.169 kb on + strand at 992.169 kb on + strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.170 kb on - strand at 992.234 kb on + strand, within ABIE40_RS05080 at 992.234 kb on + strand, within ABIE40_RS05080 at 992.234 kb on + strand, within ABIE40_RS05080 at 992.235 kb on - strand, within ABIE40_RS05080 at 992.239 kb on + strand, within ABIE40_RS05080 at 992.240 kb on - strand, within ABIE40_RS05080 at 992.240 kb on - strand, within ABIE40_RS05080 at 992.386 kb on - strand, within ABIE40_RS05080 at 992.521 kb on + strand, within ABIE40_RS05080 at 992.521 kb on + strand, within ABIE40_RS05080 at 992.522 kb on - strand, within ABIE40_RS05080 at 992.525 kb on + strand, within ABIE40_RS05080 at 992.525 kb on + strand, within ABIE40_RS05080 at 992.525 kb on + strand, within ABIE40_RS05080 at 992.526 kb on - strand, within ABIE40_RS05080 at 992.547 kb on + strand, within ABIE40_RS05080 at 992.547 kb on + strand, within ABIE40_RS05080 at 992.548 kb on - strand, within ABIE40_RS05080 at 992.548 kb on - strand, within ABIE40_RS05080 at 992.627 kb on - strand, within ABIE40_RS05080 at 992.627 kb on - strand, within ABIE40_RS05080 at 992.628 kb on + strand, within ABIE40_RS05080 at 992.629 kb on - strand, within ABIE40_RS05080 at 992.736 kb on + strand, within ABIE40_RS05080 at 992.736 kb on + strand, within ABIE40_RS05080 at 992.736 kb on + strand, within ABIE40_RS05080 at 992.736 kb on + strand, within ABIE40_RS05080 at 992.737 kb on - strand, within ABIE40_RS05080 at 992.737 kb on - strand, within ABIE40_RS05080 at 992.737 kb on - strand, within ABIE40_RS05080 at 992.933 kb on + strand, within ABIE40_RS05080 at 992.933 kb on + strand, within ABIE40_RS05080 at 992.933 kb on + strand, within ABIE40_RS05080 at 992.934 kb on - strand, within ABIE40_RS05080 at 992.934 kb on - strand, within ABIE40_RS05080 at 992.934 kb on - strand, within ABIE40_RS05080 at 992.952 kb on + strand, within ABIE40_RS05080 at 992.953 kb on - strand, within ABIE40_RS05080 at 992.983 kb on + strand, within ABIE40_RS05080 at 992.984 kb on - strand, within ABIE40_RS05080 at 992.984 kb on - strand, within ABIE40_RS05080 at 992.997 kb on + strand, within ABIE40_RS05080 at 992.997 kb on + strand, within ABIE40_RS05080 at 992.998 kb on - strand, within ABIE40_RS05080 at 992.998 kb on - strand, within ABIE40_RS05080 at 993.014 kb on + strand, within ABIE40_RS05080 at 993.014 kb on + strand, within ABIE40_RS05080 at 993.014 kb on + strand, within ABIE40_RS05080 at 993.014 kb on + strand, within ABIE40_RS05080 at 993.015 kb on - strand, within ABIE40_RS05080 at 993.015 kb on - strand, within ABIE40_RS05080 at 993.015 kb on - strand, within ABIE40_RS05080 at 993.057 kb on + strand, within ABIE40_RS05080 at 993.066 kb on + strand, within ABIE40_RS05080 at 993.066 kb on + strand, within ABIE40_RS05080 at 993.066 kb on + strand, within ABIE40_RS05080 at 993.066 kb on + strand, within ABIE40_RS05080 at 993.066 kb on + strand, within ABIE40_RS05080 at 993.066 kb on + strand, within ABIE40_RS05080 at 993.067 kb on - strand, within ABIE40_RS05080 at 993.067 kb on - strand, within ABIE40_RS05080 at 993.068 kb on + strand, within ABIE40_RS05080 at 993.068 kb on + strand, within ABIE40_RS05080 at 993.069 kb on - strand, within ABIE40_RS05080 at 993.069 kb on - strand, within ABIE40_RS05080 at 993.069 kb on - strand, within ABIE40_RS05080 at 993.076 kb on + strand, within ABIE40_RS05080 at 993.076 kb on + strand, within ABIE40_RS05080 at 993.077 kb on - strand, within ABIE40_RS05080 at 993.125 kb on + strand, within ABIE40_RS05080 at 993.125 kb on + strand, within ABIE40_RS05080 at 993.160 kb on + strand, within ABIE40_RS05080 at 993.160 kb on + strand, within ABIE40_RS05080 at 993.161 kb on - strand, within ABIE40_RS05080 at 993.161 kb on - strand, within ABIE40_RS05080 at 993.208 kb on + strand at 993.221 kb on + strand at 993.222 kb on - strand at 993.229 kb on - strand at 993.229 kb on - strand at 993.268 kb on + strand at 993.268 kb on + strand at 993.268 kb on + strand at 993.268 kb on + strand at 993.268 kb on + strand at 993.269 kb on - strand at 993.270 kb on - strand at 993.319 kb on + strand at 993.320 kb on - strand at 993.444 kb on + strand, within ABIE40_RS05085 at 993.526 kb on - strand, within ABIE40_RS05085 at 993.526 kb on - strand, within ABIE40_RS05085 at 993.609 kb on + strand, within ABIE40_RS05085 at 993.609 kb on + strand, within ABIE40_RS05085 at 993.609 kb on + strand, within ABIE40_RS05085 at 993.609 kb on + strand, within ABIE40_RS05085 at 993.609 kb on + strand, within ABIE40_RS05085 at 993.610 kb on - strand, within ABIE40_RS05085 at 993.610 kb on - strand, within ABIE40_RS05085 at 993.610 kb on - strand, within ABIE40_RS05085 at 993.610 kb on - strand, within ABIE40_RS05085 at 993.610 kb on - strand, within ABIE40_RS05085 at 993.610 kb on - strand, within ABIE40_RS05085 at 993.639 kb on + strand, within ABIE40_RS05085 at 993.639 kb on + strand, within ABIE40_RS05085 at 993.639 kb on + strand, within ABIE40_RS05085 at 993.639 kb on + strand, within ABIE40_RS05085 at 993.639 kb on + strand, within ABIE40_RS05085 at 993.640 kb on - strand, within ABIE40_RS05085 at 993.640 kb on - strand, within ABIE40_RS05085 at 993.640 kb on - strand, within ABIE40_RS05085 at 993.640 kb on - strand, within ABIE40_RS05085 at 993.651 kb on + strand, within ABIE40_RS05085 at 993.651 kb on + strand, within ABIE40_RS05085 at 993.652 kb on - strand, within ABIE40_RS05085 at 993.652 kb on - strand, within ABIE40_RS05085 at 993.847 kb on - strand at 993.854 kb on + strand at 993.855 kb on - strand at 993.918 kb on - strand at 993.918 kb on - strand at 993.989 kb on + strand, within ABIE40_RS05090 at 993.989 kb on + strand, within ABIE40_RS05090 at 993.989 kb on + strand, within ABIE40_RS05090 at 993.989 kb on + strand, within ABIE40_RS05090 at 993.989 kb on + strand, within ABIE40_RS05090 at 993.989 kb on + strand, within ABIE40_RS05090 at 993.989 kb on + strand, within ABIE40_RS05090 at 993.989 kb on + strand, within ABIE40_RS05090 at 993.990 kb on - strand, within ABIE40_RS05090 at 993.990 kb on - strand, within ABIE40_RS05090 at 993.990 kb on - strand, within ABIE40_RS05090 at 993.990 kb on - strand, within ABIE40_RS05090 at 993.990 kb on - strand, within ABIE40_RS05090 at 993.990 kb on - strand, within ABIE40_RS05090 at 994.079 kb on + strand, within ABIE40_RS05090 at 994.080 kb on - strand, within ABIE40_RS05090 at 994.138 kb on + strand, within ABIE40_RS05090
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 991,112 + ABIE40_RS05070 0.90 +1.3 991,181 + -0.8 991,181 + +1.2 991,181 + -0.7 991,181 + +0.9 991,182 - -1.1 991,182 - +0.2 991,182 - -0.7 991,393 - ABIE40_RS05075 0.24 -1.5 991,507 + ABIE40_RS05075 0.38 -1.6 991,507 + ABIE40_RS05075 0.38 -0.7 991,507 + ABIE40_RS05075 0.38 +0.5 991,507 + ABIE40_RS05075 0.38 +0.1 991,508 - ABIE40_RS05075 0.38 +1.2 991,508 - ABIE40_RS05075 0.38 -0.3 991,508 - ABIE40_RS05075 0.38 -1.2 991,508 - ABIE40_RS05075 0.38 -1.7 991,508 - ABIE40_RS05075 0.38 -0.4 991,508 - ABIE40_RS05075 0.38 +0.2 991,566 + ABIE40_RS05075 0.46 -2.8 991,566 + ABIE40_RS05075 0.46 +0.2 991,566 + ABIE40_RS05075 0.46 -2.3 991,567 - ABIE40_RS05075 0.46 -0.0 991,669 + ABIE40_RS05075 0.59 +0.0 991,669 + ABIE40_RS05075 0.59 -1.3 991,669 + ABIE40_RS05075 0.59 -1.7 991,669 + ABIE40_RS05075 0.59 -2.5 991,669 + ABIE40_RS05075 0.59 +0.4 991,669 + ABIE40_RS05075 0.59 -0.5 991,669 + ABIE40_RS05075 0.59 -1.2 991,669 + ABIE40_RS05075 0.59 -0.6 991,670 - ABIE40_RS05075 0.59 -2.1 991,804 + ABIE40_RS05075 0.76 +1.3 991,804 + ABIE40_RS05075 0.76 -0.6 991,804 + ABIE40_RS05075 0.76 +1.1 991,804 + ABIE40_RS05075 0.76 -0.3 991,804 + ABIE40_RS05075 0.76 -0.7 991,804 + ABIE40_RS05075 0.76 +0.4 991,805 - ABIE40_RS05075 0.76 +0.8 991,807 + ABIE40_RS05075 0.76 +0.9 991,808 - ABIE40_RS05075 0.76 +1.6 991,969 - +0.2 992,047 - -2.3 992,111 + -0.6 992,111 + -0.7 992,112 - +0.1 992,112 - +0.3 992,112 - +0.8 992,112 - +0.8 992,112 - -0.8 992,112 - -0.2 992,112 - -1.6 992,169 + +0.4 992,169 + +2.5 992,169 + -0.9 992,169 + -1.9 992,169 + -1.4 992,169 + -1.6 992,169 + +1.6 992,170 - +0.5 992,170 - -2.3 992,170 - -0.6 992,170 - -0.9 992,170 - +0.4 992,170 - -1.1 992,170 - +2.8 992,170 - +0.6 992,170 - +0.0 992,170 - -1.9 992,170 - +2.2 992,170 - -0.4 992,170 - -0.9 992,170 - -1.6 992,234 + ABIE40_RS05080 0.13 +0.0 992,234 + ABIE40_RS05080 0.13 +1.5 992,234 + ABIE40_RS05080 0.13 +0.2 992,235 - ABIE40_RS05080 0.13 -0.7 992,239 + ABIE40_RS05080 0.14 +0.2 992,240 - ABIE40_RS05080 0.14 +0.4 992,240 - ABIE40_RS05080 0.14 -0.6 992,386 - ABIE40_RS05080 0.26 -1.2 992,521 + ABIE40_RS05080 0.37 +0.6 992,521 + ABIE40_RS05080 0.37 +0.6 992,522 - ABIE40_RS05080 0.37 -0.2 992,525 + ABIE40_RS05080 0.37 -2.6 992,525 + ABIE40_RS05080 0.37 -1.3 992,525 + ABIE40_RS05080 0.37 +0.5 992,526 - ABIE40_RS05080 0.37 +1.6 992,547 + ABIE40_RS05080 0.39 -2.7 992,547 + ABIE40_RS05080 0.39 +0.6 992,548 - ABIE40_RS05080 0.39 -0.3 992,548 - ABIE40_RS05080 0.39 +0.6 992,627 - ABIE40_RS05080 0.46 +0.6 992,627 - ABIE40_RS05080 0.46 -1.6 992,628 + ABIE40_RS05080 0.46 +0.4 992,629 - ABIE40_RS05080 0.46 -1.9 992,736 + ABIE40_RS05080 0.55 +0.6 992,736 + ABIE40_RS05080 0.55 +0.5 992,736 + ABIE40_RS05080 0.55 -2.1 992,736 + ABIE40_RS05080 0.55 +2.2 992,737 - ABIE40_RS05080 0.55 +2.6 992,737 - ABIE40_RS05080 0.55 +0.4 992,737 - ABIE40_RS05080 0.55 +1.0 992,933 + ABIE40_RS05080 0.71 +0.2 992,933 + ABIE40_RS05080 0.71 -1.4 992,933 + ABIE40_RS05080 0.71 +0.9 992,934 - ABIE40_RS05080 0.71 -1.9 992,934 - ABIE40_RS05080 0.71 +1.1 992,934 - ABIE40_RS05080 0.71 -1.1 992,952 + ABIE40_RS05080 0.73 +1.6 992,953 - ABIE40_RS05080 0.73 +2.6 992,983 + ABIE40_RS05080 0.75 -0.6 992,984 - ABIE40_RS05080 0.75 +0.6 992,984 - ABIE40_RS05080 0.75 -2.2 992,997 + ABIE40_RS05080 0.76 -0.5 992,997 + ABIE40_RS05080 0.76 -0.5 992,998 - ABIE40_RS05080 0.76 -0.1 992,998 - ABIE40_RS05080 0.76 +0.6 993,014 + ABIE40_RS05080 0.78 -1.8 993,014 + ABIE40_RS05080 0.78 +0.8 993,014 + ABIE40_RS05080 0.78 -0.3 993,014 + ABIE40_RS05080 0.78 -0.6 993,015 - ABIE40_RS05080 0.78 -0.2 993,015 - ABIE40_RS05080 0.78 -0.8 993,015 - ABIE40_RS05080 0.78 +0.6 993,057 + ABIE40_RS05080 0.81 -0.6 993,066 + ABIE40_RS05080 0.82 -1.1 993,066 + ABIE40_RS05080 0.82 -1.0 993,066 + ABIE40_RS05080 0.82 +0.4 993,066 + ABIE40_RS05080 0.82 -2.4 993,066 + ABIE40_RS05080 0.82 -1.7 993,066 + ABIE40_RS05080 0.82 -0.5 993,067 - ABIE40_RS05080 0.82 -1.4 993,067 - ABIE40_RS05080 0.82 +0.9 993,068 + ABIE40_RS05080 0.82 +1.1 993,068 + ABIE40_RS05080 0.82 +2.2 993,069 - ABIE40_RS05080 0.82 -1.6 993,069 - ABIE40_RS05080 0.82 -0.6 993,069 - ABIE40_RS05080 0.82 -2.9 993,076 + ABIE40_RS05080 0.83 -1.1 993,076 + ABIE40_RS05080 0.83 -0.8 993,077 - ABIE40_RS05080 0.83 -0.6 993,125 + ABIE40_RS05080 0.87 -0.9 993,125 + ABIE40_RS05080 0.87 +0.7 993,160 + ABIE40_RS05080 0.90 -2.9 993,160 + ABIE40_RS05080 0.90 +0.4 993,161 - ABIE40_RS05080 0.90 +0.1 993,161 - ABIE40_RS05080 0.90 -1.5 993,208 + -1.1 993,221 + -2.0 993,222 - +0.4 993,229 - -0.6 993,229 - +0.1 993,268 + -0.2 993,268 + +2.6 993,268 + -0.8 993,268 + -0.5 993,268 + -0.7 993,269 - +0.1 993,270 - -1.1 993,319 + -0.7 993,320 - -0.6 993,444 + ABIE40_RS05085 0.31 +0.2 993,526 - ABIE40_RS05085 0.51 -2.6 993,526 - ABIE40_RS05085 0.51 -0.4 993,609 + ABIE40_RS05085 0.70 +1.0 993,609 + ABIE40_RS05085 0.70 -0.8 993,609 + ABIE40_RS05085 0.70 -0.7 993,609 + ABIE40_RS05085 0.70 -1.5 993,609 + ABIE40_RS05085 0.70 -0.4 993,610 - ABIE40_RS05085 0.71 -0.5 993,610 - ABIE40_RS05085 0.71 -0.8 993,610 - ABIE40_RS05085 0.71 -1.1 993,610 - ABIE40_RS05085 0.71 +0.5 993,610 - ABIE40_RS05085 0.71 -0.5 993,610 - ABIE40_RS05085 0.71 +1.4 993,639 + ABIE40_RS05085 0.78 -0.9 993,639 + ABIE40_RS05085 0.78 +1.2 993,639 + ABIE40_RS05085 0.78 -1.7 993,639 + ABIE40_RS05085 0.78 -1.6 993,639 + ABIE40_RS05085 0.78 -2.3 993,640 - ABIE40_RS05085 0.78 +2.0 993,640 - ABIE40_RS05085 0.78 +0.1 993,640 - ABIE40_RS05085 0.78 +0.3 993,640 - ABIE40_RS05085 0.78 -0.4 993,651 + ABIE40_RS05085 0.80 -1.8 993,651 + ABIE40_RS05085 0.80 -0.8 993,652 - ABIE40_RS05085 0.81 +0.0 993,652 - ABIE40_RS05085 0.81 -0.8 993,847 - -2.3 993,854 + -2.4 993,855 - +1.6 993,918 - +0.6 993,918 - +0.1 993,989 + ABIE40_RS05090 0.22 -0.4 993,989 + ABIE40_RS05090 0.22 -2.2 993,989 + ABIE40_RS05090 0.22 -0.1 993,989 + ABIE40_RS05090 0.22 -0.3 993,989 + ABIE40_RS05090 0.22 -1.9 993,989 + ABIE40_RS05090 0.22 -0.0 993,989 + ABIE40_RS05090 0.22 -1.5 993,989 + ABIE40_RS05090 0.22 -1.0 993,990 - ABIE40_RS05090 0.22 -0.2 993,990 - ABIE40_RS05090 0.22 -0.5 993,990 - ABIE40_RS05090 0.22 -1.6 993,990 - ABIE40_RS05090 0.22 -1.2 993,990 - ABIE40_RS05090 0.22 +0.1 993,990 - ABIE40_RS05090 0.22 -1.8 994,079 + ABIE40_RS05090 0.42 -0.7 994,080 - ABIE40_RS05090 0.43 +0.4 994,138 + ABIE40_RS05090 0.55 +0.7
Or see this region's nucleotide sequence