Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04585 and ABIE40_RS04590 are separated by 120 nucleotides ABIE40_RS04590 and ABIE40_RS04595 are separated by 148 nucleotides ABIE40_RS04595 and ABIE40_RS04600 overlap by 4 nucleotides ABIE40_RS04600 and ABIE40_RS04605 are separated by 244 nucleotides ABIE40_RS04605 and ABIE40_RS04610 are separated by 156 nucleotides
ABIE40_RS04585: ABIE40_RS04585 - DeoR/GlpR family DNA-binding transcription regulator, at 902,217 to 902,972
_RS04585
ABIE40_RS04590: ABIE40_RS04590 - DUF4406 domain-containing protein, at 903,093 to 903,458
_RS04590
ABIE40_RS04595: ABIE40_RS04595 - glutathione S-transferase N-terminal domain-containing protein, at 903,607 to 904,227
_RS04595
ABIE40_RS04600: ABIE40_RS04600 - MmcQ/YjbR family DNA-binding protein, at 904,224 to 904,577
_RS04600
ABIE40_RS04605: ABIE40_RS04605 - hypothetical protein, at 904,822 to 905,001
_RS04605
ABIE40_RS04610: ABIE40_RS04610 - LysR substrate-binding domain-containing protein, at 905,158 to 906,054
_RS04610
Position (kb) 903
904
905 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 902.676 kb on - strand, within ABIE40_RS04585 at 902.870 kb on + strand, within ABIE40_RS04585 at 902.871 kb on - strand, within ABIE40_RS04585 at 903.186 kb on + strand, within ABIE40_RS04590 at 903.186 kb on + strand, within ABIE40_RS04590 at 903.186 kb on + strand, within ABIE40_RS04590 at 903.186 kb on + strand, within ABIE40_RS04590 at 903.186 kb on + strand, within ABIE40_RS04590 at 903.187 kb on - strand, within ABIE40_RS04590 at 903.300 kb on + strand, within ABIE40_RS04590 at 903.300 kb on + strand, within ABIE40_RS04590 at 903.301 kb on - strand, within ABIE40_RS04590 at 903.457 kb on - strand at 903.490 kb on + strand at 903.490 kb on + strand at 903.491 kb on - strand at 903.496 kb on + strand at 903.496 kb on + strand at 903.512 kb on + strand at 903.512 kb on + strand at 903.512 kb on + strand at 903.512 kb on + strand at 903.513 kb on - strand at 903.513 kb on - strand at 903.513 kb on - strand at 903.577 kb on + strand at 903.578 kb on - strand at 903.578 kb on - strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.579 kb on + strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.580 kb on - strand at 903.619 kb on + strand at 903.620 kb on - strand at 903.620 kb on - strand at 903.620 kb on - strand at 903.682 kb on + strand, within ABIE40_RS04595 at 903.733 kb on + strand, within ABIE40_RS04595 at 903.817 kb on + strand, within ABIE40_RS04595 at 903.817 kb on + strand, within ABIE40_RS04595 at 903.817 kb on + strand, within ABIE40_RS04595 at 903.818 kb on - strand, within ABIE40_RS04595 at 903.818 kb on - strand, within ABIE40_RS04595 at 903.818 kb on - strand, within ABIE40_RS04595 at 903.819 kb on + strand, within ABIE40_RS04595 at 903.819 kb on + strand, within ABIE40_RS04595 at 903.819 kb on + strand, within ABIE40_RS04595 at 903.820 kb on - strand, within ABIE40_RS04595 at 903.901 kb on + strand, within ABIE40_RS04595 at 903.901 kb on + strand, within ABIE40_RS04595 at 903.901 kb on + strand, within ABIE40_RS04595 at 903.902 kb on - strand, within ABIE40_RS04595 at 903.936 kb on + strand, within ABIE40_RS04595 at 903.936 kb on + strand, within ABIE40_RS04595 at 904.075 kb on + strand, within ABIE40_RS04595 at 904.075 kb on + strand, within ABIE40_RS04595 at 904.075 kb on + strand, within ABIE40_RS04595 at 904.075 kb on + strand, within ABIE40_RS04595 at 904.076 kb on - strand, within ABIE40_RS04595 at 904.076 kb on - strand, within ABIE40_RS04595 at 904.076 kb on - strand, within ABIE40_RS04595 at 904.077 kb on + strand, within ABIE40_RS04595 at 904.077 kb on + strand, within ABIE40_RS04595 at 904.077 kb on + strand, within ABIE40_RS04595 at 904.077 kb on + strand, within ABIE40_RS04595 at 904.078 kb on - strand, within ABIE40_RS04595 at 904.093 kb on + strand, within ABIE40_RS04595 at 904.093 kb on + strand, within ABIE40_RS04595 at 904.094 kb on - strand, within ABIE40_RS04595 at 904.168 kb on + strand at 904.168 kb on + strand at 904.168 kb on + strand at 904.168 kb on + strand at 904.169 kb on - strand at 904.169 kb on - strand at 904.169 kb on - strand at 904.225 kb on + strand at 904.225 kb on + strand at 904.226 kb on - strand at 904.348 kb on + strand, within ABIE40_RS04600 at 904.348 kb on + strand, within ABIE40_RS04600 at 904.348 kb on + strand, within ABIE40_RS04600 at 904.348 kb on + strand, within ABIE40_RS04600 at 904.349 kb on - strand, within ABIE40_RS04600 at 904.349 kb on - strand, within ABIE40_RS04600 at 904.366 kb on + strand, within ABIE40_RS04600 at 904.366 kb on + strand, within ABIE40_RS04600 at 904.366 kb on + strand, within ABIE40_RS04600 at 904.367 kb on - strand, within ABIE40_RS04600 at 904.367 kb on - strand, within ABIE40_RS04600 at 904.367 kb on - strand, within ABIE40_RS04600 at 904.367 kb on - strand, within ABIE40_RS04600 at 904.489 kb on + strand, within ABIE40_RS04600 at 904.633 kb on + strand at 904.633 kb on + strand at 904.633 kb on + strand at 904.634 kb on - strand at 904.634 kb on - strand at 904.634 kb on - strand at 904.662 kb on + strand at 904.662 kb on + strand at 904.662 kb on + strand at 904.781 kb on - strand at 905.004 kb on + strand at 905.005 kb on - strand at 905.005 kb on - strand at 905.005 kb on - strand at 905.062 kb on + strand at 905.062 kb on + strand at 905.062 kb on + strand at 905.062 kb on + strand at 905.063 kb on - strand at 905.063 kb on - strand at 905.063 kb on - strand at 905.063 kb on - strand at 905.084 kb on + strand at 905.085 kb on - strand at 905.085 kb on - strand at 905.085 kb on - strand at 905.146 kb on + strand at 905.157 kb on + strand at 905.158 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 902,676 - ABIE40_RS04585 0.61 +0.8 902,870 + ABIE40_RS04585 0.86 +1.1 902,871 - ABIE40_RS04585 0.87 -0.9 903,186 + ABIE40_RS04590 0.25 -2.6 903,186 + ABIE40_RS04590 0.25 -1.4 903,186 + ABIE40_RS04590 0.25 -1.0 903,186 + ABIE40_RS04590 0.25 -1.4 903,186 + ABIE40_RS04590 0.25 -1.3 903,187 - ABIE40_RS04590 0.26 +0.1 903,300 + ABIE40_RS04590 0.57 +2.2 903,300 + ABIE40_RS04590 0.57 -1.4 903,301 - ABIE40_RS04590 0.57 +0.6 903,457 - +0.0 903,490 + -1.0 903,490 + +0.7 903,491 - -1.6 903,496 + -1.1 903,496 + -0.0 903,512 + -0.8 903,512 + -1.4 903,512 + -1.6 903,512 + -1.7 903,513 - +0.6 903,513 - +2.5 903,513 - +0.2 903,577 + +2.2 903,578 - +0.7 903,578 - -0.0 903,579 + -2.3 903,579 + -1.0 903,579 + +1.8 903,579 + +0.2 903,579 + -1.0 903,579 + -0.3 903,579 + -0.1 903,579 + +0.8 903,579 + +0.4 903,579 + -1.3 903,579 + -2.6 903,579 + -0.2 903,579 + -2.8 903,579 + -2.2 903,579 + -0.7 903,579 + -0.4 903,579 + -0.1 903,579 + -2.0 903,579 + -2.0 903,579 + +3.2 903,579 + -1.7 903,579 + -0.3 903,580 - +0.5 903,580 - -1.0 903,580 - +1.3 903,580 - +0.2 903,580 - -0.5 903,580 - -0.1 903,580 - +0.9 903,580 - +0.3 903,580 - -1.0 903,580 - +0.1 903,580 - +0.4 903,580 - -1.4 903,580 - -1.0 903,580 - +1.3 903,580 - +2.0 903,580 - +0.4 903,580 - -1.8 903,619 + -1.6 903,620 - -0.4 903,620 - -0.9 903,620 - +0.3 903,682 + ABIE40_RS04595 0.12 -0.4 903,733 + ABIE40_RS04595 0.20 -0.1 903,817 + ABIE40_RS04595 0.34 -2.0 903,817 + ABIE40_RS04595 0.34 +0.2 903,817 + ABIE40_RS04595 0.34 -1.2 903,818 - ABIE40_RS04595 0.34 -0.8 903,818 - ABIE40_RS04595 0.34 +0.9 903,818 - ABIE40_RS04595 0.34 +0.8 903,819 + ABIE40_RS04595 0.34 -0.7 903,819 + ABIE40_RS04595 0.34 -1.4 903,819 + ABIE40_RS04595 0.34 +0.9 903,820 - ABIE40_RS04595 0.34 -0.2 903,901 + ABIE40_RS04595 0.47 +0.3 903,901 + ABIE40_RS04595 0.47 +0.0 903,901 + ABIE40_RS04595 0.47 -0.5 903,902 - ABIE40_RS04595 0.48 +0.4 903,936 + ABIE40_RS04595 0.53 -0.3 903,936 + ABIE40_RS04595 0.53 -1.3 904,075 + ABIE40_RS04595 0.75 -0.7 904,075 + ABIE40_RS04595 0.75 -0.2 904,075 + ABIE40_RS04595 0.75 -0.9 904,075 + ABIE40_RS04595 0.75 +0.3 904,076 - ABIE40_RS04595 0.76 +1.0 904,076 - ABIE40_RS04595 0.76 -0.5 904,076 - ABIE40_RS04595 0.76 -0.5 904,077 + ABIE40_RS04595 0.76 -1.0 904,077 + ABIE40_RS04595 0.76 +0.1 904,077 + ABIE40_RS04595 0.76 -2.2 904,077 + ABIE40_RS04595 0.76 +0.2 904,078 - ABIE40_RS04595 0.76 +0.7 904,093 + ABIE40_RS04595 0.78 +0.6 904,093 + ABIE40_RS04595 0.78 -0.3 904,094 - ABIE40_RS04595 0.78 -1.0 904,168 + -1.4 904,168 + +0.8 904,168 + -0.1 904,168 + -0.3 904,169 - -1.6 904,169 - -3.4 904,169 - -0.4 904,225 + -1.1 904,225 + -0.5 904,226 - -0.4 904,348 + ABIE40_RS04600 0.35 +1.4 904,348 + ABIE40_RS04600 0.35 +0.4 904,348 + ABIE40_RS04600 0.35 +2.3 904,348 + ABIE40_RS04600 0.35 -0.7 904,349 - ABIE40_RS04600 0.35 +0.1 904,349 - ABIE40_RS04600 0.35 -1.8 904,366 + ABIE40_RS04600 0.40 +2.6 904,366 + ABIE40_RS04600 0.40 -0.3 904,366 + ABIE40_RS04600 0.40 +1.0 904,367 - ABIE40_RS04600 0.40 +0.4 904,367 - ABIE40_RS04600 0.40 -2.3 904,367 - ABIE40_RS04600 0.40 -1.1 904,367 - ABIE40_RS04600 0.40 -0.2 904,489 + ABIE40_RS04600 0.75 +0.2 904,633 + -0.9 904,633 + +0.5 904,633 + +2.0 904,634 - -0.5 904,634 - +0.4 904,634 - +0.3 904,662 + -0.1 904,662 + +1.9 904,662 + +1.1 904,781 - +0.3 905,004 + +1.1 905,005 - +0.4 905,005 - -1.6 905,005 - -2.4 905,062 + -0.6 905,062 + -0.6 905,062 + +0.7 905,062 + -0.5 905,063 - +0.4 905,063 - -0.9 905,063 - -1.5 905,063 - +0.9 905,084 + -1.4 905,085 - -0.2 905,085 - -0.8 905,085 - -0.3 905,146 + +1.4 905,157 + +0.5 905,158 - -0.5
Or see this region's nucleotide sequence