Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS04210 and ABIE40_RS04215 are separated by 276 nucleotides ABIE40_RS04215 and ABIE40_RS04220 overlap by 4 nucleotides ABIE40_RS04220 and ABIE40_RS04225 are separated by 28 nucleotides
ABIE40_RS04210: ABIE40_RS04210 - porin, at 829,121 to 830,221
_RS04210
ABIE40_RS04215: ABIE40_RS04215 - sensor domain-containing phosphodiesterase, at 830,498 to 833,410
_RS04215
ABIE40_RS04220: ABIE40_RS04220 - GNAT family protein, at 833,407 to 834,021
_RS04220
ABIE40_RS04225: ABIE40_RS04225 - pitrilysin family protein, at 834,050 to 835,348
_RS04225
Position (kb) 830
831
832
833
834 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 829.518 kb on + strand, within ABIE40_RS04210 at 829.518 kb on + strand, within ABIE40_RS04210 at 829.518 kb on + strand, within ABIE40_RS04210 at 829.518 kb on + strand, within ABIE40_RS04210 at 829.519 kb on - strand, within ABIE40_RS04210 at 829.532 kb on - strand, within ABIE40_RS04210 at 829.647 kb on + strand, within ABIE40_RS04210 at 829.648 kb on - strand, within ABIE40_RS04210 at 829.765 kb on + strand, within ABIE40_RS04210 at 829.765 kb on + strand, within ABIE40_RS04210 at 829.765 kb on + strand, within ABIE40_RS04210 at 829.765 kb on + strand, within ABIE40_RS04210 at 829.766 kb on - strand, within ABIE40_RS04210 at 829.766 kb on - strand, within ABIE40_RS04210 at 829.767 kb on + strand, within ABIE40_RS04210 at 829.767 kb on + strand, within ABIE40_RS04210 at 829.767 kb on + strand, within ABIE40_RS04210 at 829.767 kb on + strand, within ABIE40_RS04210 at 829.767 kb on + strand, within ABIE40_RS04210 at 829.767 kb on + strand, within ABIE40_RS04210 at 829.768 kb on - strand, within ABIE40_RS04210 at 829.768 kb on - strand, within ABIE40_RS04210 at 829.768 kb on - strand, within ABIE40_RS04210 at 829.768 kb on - strand, within ABIE40_RS04210 at 829.768 kb on - strand, within ABIE40_RS04210 at 829.768 kb on - strand, within ABIE40_RS04210 at 829.801 kb on - strand, within ABIE40_RS04210 at 829.863 kb on + strand, within ABIE40_RS04210 at 829.866 kb on + strand, within ABIE40_RS04210 at 829.866 kb on + strand, within ABIE40_RS04210 at 829.867 kb on - strand, within ABIE40_RS04210 at 829.948 kb on + strand, within ABIE40_RS04210 at 829.949 kb on - strand, within ABIE40_RS04210 at 830.037 kb on + strand, within ABIE40_RS04210 at 830.072 kb on + strand, within ABIE40_RS04210 at 830.072 kb on + strand, within ABIE40_RS04210 at 830.076 kb on + strand, within ABIE40_RS04210 at 830.076 kb on + strand, within ABIE40_RS04210 at 830.076 kb on + strand, within ABIE40_RS04210 at 830.076 kb on + strand, within ABIE40_RS04210 at 830.077 kb on - strand, within ABIE40_RS04210 at 830.077 kb on - strand, within ABIE40_RS04210 at 830.077 kb on - strand, within ABIE40_RS04210 at 830.082 kb on + strand, within ABIE40_RS04210 at 830.082 kb on + strand, within ABIE40_RS04210 at 830.082 kb on + strand, within ABIE40_RS04210 at 830.095 kb on - strand, within ABIE40_RS04210 at 830.115 kb on + strand at 830.115 kb on + strand at 830.115 kb on + strand at 830.116 kb on - strand at 830.116 kb on - strand at 830.116 kb on - strand at 830.334 kb on + strand at 830.335 kb on - strand at 830.748 kb on - strand at 830.775 kb on + strand at 830.776 kb on - strand at 830.791 kb on - strand, within ABIE40_RS04215 at 830.958 kb on + strand, within ABIE40_RS04215 at 830.959 kb on - strand, within ABIE40_RS04215 at 831.219 kb on + strand, within ABIE40_RS04215 at 831.352 kb on - strand, within ABIE40_RS04215 at 833.499 kb on - strand, within ABIE40_RS04220 at 833.613 kb on + strand, within ABIE40_RS04220 at 833.613 kb on + strand, within ABIE40_RS04220 at 833.614 kb on + strand, within ABIE40_RS04220 at 833.614 kb on - strand, within ABIE40_RS04220 at 833.614 kb on - strand, within ABIE40_RS04220 at 833.614 kb on - strand, within ABIE40_RS04220 at 833.615 kb on + strand, within ABIE40_RS04220 at 833.615 kb on + strand, within ABIE40_RS04220 at 833.615 kb on + strand, within ABIE40_RS04220 at 833.615 kb on + strand, within ABIE40_RS04220 at 833.616 kb on - strand, within ABIE40_RS04220 at 833.616 kb on - strand, within ABIE40_RS04220 at 833.616 kb on - strand, within ABIE40_RS04220 at 833.616 kb on - strand, within ABIE40_RS04220 at 833.616 kb on - strand, within ABIE40_RS04220 at 833.620 kb on + strand, within ABIE40_RS04220 at 833.620 kb on + strand, within ABIE40_RS04220 at 833.620 kb on + strand, within ABIE40_RS04220 at 833.621 kb on - strand, within ABIE40_RS04220 at 833.621 kb on - strand, within ABIE40_RS04220 at 833.621 kb on - strand, within ABIE40_RS04220 at 833.622 kb on + strand, within ABIE40_RS04220 at 833.622 kb on + strand, within ABIE40_RS04220 at 833.622 kb on + strand, within ABIE40_RS04220 at 833.622 kb on + strand, within ABIE40_RS04220 at 833.622 kb on + strand, within ABIE40_RS04220 at 833.623 kb on - strand, within ABIE40_RS04220 at 833.623 kb on - strand, within ABIE40_RS04220 at 833.623 kb on - strand, within ABIE40_RS04220 at 833.646 kb on + strand, within ABIE40_RS04220 at 833.646 kb on + strand, within ABIE40_RS04220 at 833.646 kb on + strand, within ABIE40_RS04220 at 833.647 kb on - strand, within ABIE40_RS04220 at 833.647 kb on - strand, within ABIE40_RS04220 at 833.647 kb on - strand, within ABIE40_RS04220 at 833.647 kb on - strand, within ABIE40_RS04220 at 833.647 kb on - strand, within ABIE40_RS04220 at 833.647 kb on - strand, within ABIE40_RS04220 at 833.719 kb on - strand, within ABIE40_RS04220 at 833.720 kb on + strand, within ABIE40_RS04220 at 833.721 kb on - strand, within ABIE40_RS04220 at 833.721 kb on - strand, within ABIE40_RS04220 at 833.721 kb on - strand, within ABIE40_RS04220 at 833.721 kb on - strand, within ABIE40_RS04220 at 833.721 kb on - strand, within ABIE40_RS04220 at 833.721 kb on - strand, within ABIE40_RS04220 at 833.730 kb on + strand, within ABIE40_RS04220 at 833.731 kb on - strand, within ABIE40_RS04220 at 833.731 kb on - strand, within ABIE40_RS04220 at 833.798 kb on + strand, within ABIE40_RS04220 at 833.798 kb on + strand, within ABIE40_RS04220 at 833.798 kb on + strand, within ABIE40_RS04220 at 833.798 kb on + strand, within ABIE40_RS04220 at 833.798 kb on + strand, within ABIE40_RS04220 at 833.799 kb on - strand, within ABIE40_RS04220 at 833.799 kb on - strand, within ABIE40_RS04220 at 833.799 kb on - strand, within ABIE40_RS04220 at 833.799 kb on - strand, within ABIE40_RS04220 at 833.799 kb on - strand, within ABIE40_RS04220 at 833.799 kb on - strand, within ABIE40_RS04220 at 833.955 kb on - strand, within ABIE40_RS04220 at 834.255 kb on + strand, within ABIE40_RS04225 at 834.255 kb on + strand, within ABIE40_RS04225 at 834.256 kb on - strand, within ABIE40_RS04225 at 834.256 kb on - strand, within ABIE40_RS04225 at 834.256 kb on - strand, within ABIE40_RS04225
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 829,518 + ABIE40_RS04210 0.36 -0.6 829,518 + ABIE40_RS04210 0.36 +2.2 829,518 + ABIE40_RS04210 0.36 -0.6 829,518 + ABIE40_RS04210 0.36 +0.8 829,519 - ABIE40_RS04210 0.36 -0.5 829,532 - ABIE40_RS04210 0.37 -1.0 829,647 + ABIE40_RS04210 0.48 -2.4 829,648 - ABIE40_RS04210 0.48 +0.2 829,765 + ABIE40_RS04210 0.58 +0.9 829,765 + ABIE40_RS04210 0.58 -0.2 829,765 + ABIE40_RS04210 0.58 +0.0 829,765 + ABIE40_RS04210 0.58 -1.0 829,766 - ABIE40_RS04210 0.59 -1.2 829,766 - ABIE40_RS04210 0.59 +0.5 829,767 + ABIE40_RS04210 0.59 -1.7 829,767 + ABIE40_RS04210 0.59 -0.2 829,767 + ABIE40_RS04210 0.59 -0.1 829,767 + ABIE40_RS04210 0.59 +0.7 829,767 + ABIE40_RS04210 0.59 -0.6 829,767 + ABIE40_RS04210 0.59 +0.8 829,768 - ABIE40_RS04210 0.59 -0.3 829,768 - ABIE40_RS04210 0.59 -1.0 829,768 - ABIE40_RS04210 0.59 -1.6 829,768 - ABIE40_RS04210 0.59 +1.1 829,768 - ABIE40_RS04210 0.59 -2.3 829,768 - ABIE40_RS04210 0.59 -0.1 829,801 - ABIE40_RS04210 0.62 +0.5 829,863 + ABIE40_RS04210 0.67 +1.9 829,866 + ABIE40_RS04210 0.68 +0.7 829,866 + ABIE40_RS04210 0.68 +0.0 829,867 - ABIE40_RS04210 0.68 -1.2 829,948 + ABIE40_RS04210 0.75 +0.3 829,949 - ABIE40_RS04210 0.75 +2.2 830,037 + ABIE40_RS04210 0.83 -2.6 830,072 + ABIE40_RS04210 0.86 -1.1 830,072 + ABIE40_RS04210 0.86 -0.8 830,076 + ABIE40_RS04210 0.87 -1.0 830,076 + ABIE40_RS04210 0.87 -1.3 830,076 + ABIE40_RS04210 0.87 -0.5 830,076 + ABIE40_RS04210 0.87 -0.5 830,077 - ABIE40_RS04210 0.87 +1.9 830,077 - ABIE40_RS04210 0.87 +0.0 830,077 - ABIE40_RS04210 0.87 -0.1 830,082 + ABIE40_RS04210 0.87 +1.3 830,082 + ABIE40_RS04210 0.87 -1.5 830,082 + ABIE40_RS04210 0.87 -0.1 830,095 - ABIE40_RS04210 0.88 -0.5 830,115 + -1.2 830,115 + -0.8 830,115 + +0.1 830,116 - +0.1 830,116 - -2.5 830,116 - +1.3 830,334 + -0.5 830,335 - +0.7 830,748 - +1.9 830,775 + -0.4 830,776 - +0.6 830,791 - ABIE40_RS04215 0.10 +0.0 830,958 + ABIE40_RS04215 0.16 -0.8 830,959 - ABIE40_RS04215 0.16 -2.0 831,219 + ABIE40_RS04215 0.25 -1.0 831,352 - ABIE40_RS04215 0.29 -1.0 833,499 - ABIE40_RS04220 0.15 -2.1 833,613 + ABIE40_RS04220 0.33 -0.3 833,613 + ABIE40_RS04220 0.33 -1.0 833,614 + ABIE40_RS04220 0.34 -0.4 833,614 - ABIE40_RS04220 0.34 +0.4 833,614 - ABIE40_RS04220 0.34 -0.1 833,614 - ABIE40_RS04220 0.34 -0.6 833,615 + ABIE40_RS04220 0.34 +1.2 833,615 + ABIE40_RS04220 0.34 +2.6 833,615 + ABIE40_RS04220 0.34 +1.0 833,615 + ABIE40_RS04220 0.34 +1.3 833,616 - ABIE40_RS04220 0.34 -0.9 833,616 - ABIE40_RS04220 0.34 -0.0 833,616 - ABIE40_RS04220 0.34 +0.8 833,616 - ABIE40_RS04220 0.34 +4.2 833,616 - ABIE40_RS04220 0.34 -1.6 833,620 + ABIE40_RS04220 0.35 +2.0 833,620 + ABIE40_RS04220 0.35 -1.9 833,620 + ABIE40_RS04220 0.35 +2.2 833,621 - ABIE40_RS04220 0.35 +0.4 833,621 - ABIE40_RS04220 0.35 -0.9 833,621 - ABIE40_RS04220 0.35 +1.2 833,622 + ABIE40_RS04220 0.35 -0.1 833,622 + ABIE40_RS04220 0.35 -0.6 833,622 + ABIE40_RS04220 0.35 +1.1 833,622 + ABIE40_RS04220 0.35 -2.0 833,622 + ABIE40_RS04220 0.35 +0.6 833,623 - ABIE40_RS04220 0.35 -0.8 833,623 - ABIE40_RS04220 0.35 -1.0 833,623 - ABIE40_RS04220 0.35 -0.3 833,646 + ABIE40_RS04220 0.39 +2.2 833,646 + ABIE40_RS04220 0.39 -3.0 833,646 + ABIE40_RS04220 0.39 -1.1 833,647 - ABIE40_RS04220 0.39 -2.1 833,647 - ABIE40_RS04220 0.39 -2.8 833,647 - ABIE40_RS04220 0.39 -1.7 833,647 - ABIE40_RS04220 0.39 -0.4 833,647 - ABIE40_RS04220 0.39 -0.6 833,647 - ABIE40_RS04220 0.39 -0.9 833,719 - ABIE40_RS04220 0.51 -1.8 833,720 + ABIE40_RS04220 0.51 -2.7 833,721 - ABIE40_RS04220 0.51 +1.1 833,721 - ABIE40_RS04220 0.51 -0.7 833,721 - ABIE40_RS04220 0.51 -1.5 833,721 - ABIE40_RS04220 0.51 +1.0 833,721 - ABIE40_RS04220 0.51 +0.9 833,721 - ABIE40_RS04220 0.51 -0.9 833,730 + ABIE40_RS04220 0.53 -0.9 833,731 - ABIE40_RS04220 0.53 -0.2 833,731 - ABIE40_RS04220 0.53 -1.9 833,798 + ABIE40_RS04220 0.64 -0.2 833,798 + ABIE40_RS04220 0.64 -1.3 833,798 + ABIE40_RS04220 0.64 -1.4 833,798 + ABIE40_RS04220 0.64 -1.3 833,798 + ABIE40_RS04220 0.64 -0.1 833,799 - ABIE40_RS04220 0.64 -0.7 833,799 - ABIE40_RS04220 0.64 +1.4 833,799 - ABIE40_RS04220 0.64 -1.6 833,799 - ABIE40_RS04220 0.64 -0.8 833,799 - ABIE40_RS04220 0.64 -0.6 833,799 - ABIE40_RS04220 0.64 +0.2 833,955 - ABIE40_RS04220 0.89 +2.1 834,255 + ABIE40_RS04225 0.16 +0.2 834,255 + ABIE40_RS04225 0.16 -2.6 834,256 - ABIE40_RS04225 0.16 -1.1 834,256 - ABIE40_RS04225 0.16 -1.5 834,256 - ABIE40_RS04225 0.16 +0.2
Or see this region's nucleotide sequence