Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02960

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02955 and ABIE40_RS02960 are separated by 17 nucleotidesABIE40_RS02960 and ABIE40_RS02965 are separated by 2 nucleotidesABIE40_RS02965 and ABIE40_RS02970 are separated by 164 nucleotides ABIE40_RS02955: ABIE40_RS02955 - flagellar basal-body rod protein FlgF, at 584,476 to 585,210 _RS02955 ABIE40_RS02960: ABIE40_RS02960 - flagellar protein export ATPase FliI, at 585,228 to 586,622 _RS02960 ABIE40_RS02965: ABIE40_RS02965 - flagellar protein, at 586,625 to 587,176 _RS02965 ABIE40_RS02970: ABIE40_RS02970 - flagellar basal body rod protein FlgB, at 587,341 to 587,733 _RS02970 Position (kb) 585 586 587Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 584.249 kb on - strandat 584.267 kb on - strandat 584.470 kb on - strandat 584.491 kb on + strandat 584.491 kb on + strandat 584.492 kb on - strandat 584.492 kb on - strandat 584.492 kb on - strandat 584.492 kb on - strandat 584.616 kb on + strand, within ABIE40_RS02955at 584.668 kb on + strand, within ABIE40_RS02955at 584.668 kb on + strand, within ABIE40_RS02955at 584.668 kb on + strand, within ABIE40_RS02955at 584.668 kb on + strand, within ABIE40_RS02955at 584.668 kb on + strand, within ABIE40_RS02955at 584.669 kb on - strand, within ABIE40_RS02955at 584.669 kb on - strand, within ABIE40_RS02955at 584.669 kb on - strand, within ABIE40_RS02955at 584.669 kb on - strand, within ABIE40_RS02955at 584.669 kb on - strand, within ABIE40_RS02955at 584.806 kb on - strand, within ABIE40_RS02955at 584.913 kb on + strand, within ABIE40_RS02955at 584.913 kb on + strand, within ABIE40_RS02955at 584.913 kb on + strand, within ABIE40_RS02955at 584.913 kb on + strand, within ABIE40_RS02955at 584.913 kb on + strand, within ABIE40_RS02955at 584.913 kb on + strand, within ABIE40_RS02955at 584.913 kb on + strand, within ABIE40_RS02955at 584.914 kb on - strand, within ABIE40_RS02955at 584.914 kb on - strand, within ABIE40_RS02955at 584.914 kb on - strand, within ABIE40_RS02955at 584.914 kb on - strand, within ABIE40_RS02955at 584.914 kb on - strand, within ABIE40_RS02955at 584.914 kb on - strand, within ABIE40_RS02955at 584.914 kb on - strand, within ABIE40_RS02955at 584.914 kb on - strand, within ABIE40_RS02955at 584.914 kb on - strand, within ABIE40_RS02955at 584.917 kb on + strand, within ABIE40_RS02955at 584.917 kb on + strand, within ABIE40_RS02955at 584.918 kb on - strand, within ABIE40_RS02955at 584.918 kb on - strand, within ABIE40_RS02955at 584.969 kb on - strand, within ABIE40_RS02955at 584.978 kb on - strand, within ABIE40_RS02955at 584.978 kb on - strand, within ABIE40_RS02955at 585.046 kb on - strand, within ABIE40_RS02955at 585.064 kb on + strand, within ABIE40_RS02955at 585.065 kb on - strand, within ABIE40_RS02955at 585.300 kb on + strandat 585.363 kb on + strandat 585.363 kb on + strandat 585.363 kb on + strandat 585.364 kb on - strandat 585.364 kb on - strandat 585.364 kb on - strandat 585.365 kb on + strandat 585.366 kb on - strandat 585.366 kb on - strandat 585.366 kb on - strandat 585.366 kb on - strandat 585.431 kb on + strand, within ABIE40_RS02960at 585.431 kb on + strand, within ABIE40_RS02960at 585.432 kb on - strand, within ABIE40_RS02960at 585.432 kb on - strand, within ABIE40_RS02960at 585.474 kb on + strand, within ABIE40_RS02960at 585.475 kb on - strand, within ABIE40_RS02960at 585.475 kb on - strand, within ABIE40_RS02960at 585.475 kb on - strand, within ABIE40_RS02960at 585.654 kb on - strand, within ABIE40_RS02960at 585.722 kb on + strand, within ABIE40_RS02960at 585.723 kb on - strand, within ABIE40_RS02960at 585.782 kb on + strand, within ABIE40_RS02960at 585.783 kb on - strand, within ABIE40_RS02960at 585.887 kb on + strand, within ABIE40_RS02960at 585.887 kb on + strand, within ABIE40_RS02960at 585.993 kb on + strand, within ABIE40_RS02960at 585.993 kb on + strand, within ABIE40_RS02960at 586.499 kb on + strandat 586.500 kb on - strandat 586.503 kb on + strandat 586.503 kb on + strandat 586.503 kb on + strandat 586.504 kb on - strandat 586.504 kb on - strandat 586.504 kb on - strandat 586.620 kb on + strandat 586.620 kb on + strandat 586.760 kb on + strand, within ABIE40_RS02965at 586.760 kb on + strand, within ABIE40_RS02965at 586.760 kb on + strand, within ABIE40_RS02965at 586.760 kb on + strand, within ABIE40_RS02965at 586.760 kb on + strand, within ABIE40_RS02965at 586.760 kb on + strand, within ABIE40_RS02965at 586.761 kb on - strand, within ABIE40_RS02965at 586.761 kb on - strand, within ABIE40_RS02965at 586.761 kb on - strand, within ABIE40_RS02965at 586.761 kb on - strand, within ABIE40_RS02965at 586.761 kb on - strand, within ABIE40_RS02965at 586.761 kb on - strand, within ABIE40_RS02965at 586.795 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.066 kb on + strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.067 kb on - strand, within ABIE40_RS02965at 587.168 kb on + strandat 587.168 kb on + strandat 587.168 kb on + strandat 587.169 kb on - strandat 587.169 kb on - strandat 587.174 kb on + strandat 587.175 kb on - strandat 587.175 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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584,249 - -1.3
584,267 - -1.1
584,470 - -0.2
584,491 + +3.3
584,491 + -1.1
584,492 - -1.3
584,492 - +0.2
584,492 - +0.5
584,492 - -2.9
584,616 + ABIE40_RS02955 0.19 -0.0
584,668 + ABIE40_RS02955 0.26 -0.8
584,668 + ABIE40_RS02955 0.26 -1.4
584,668 + ABIE40_RS02955 0.26 -1.0
584,668 + ABIE40_RS02955 0.26 +3.3
584,668 + ABIE40_RS02955 0.26 -1.4
584,669 - ABIE40_RS02955 0.26 +0.7
584,669 - ABIE40_RS02955 0.26 -1.0
584,669 - ABIE40_RS02955 0.26 -1.5
584,669 - ABIE40_RS02955 0.26 -1.5
584,669 - ABIE40_RS02955 0.26 -0.3
584,806 - ABIE40_RS02955 0.45 +0.3
584,913 + ABIE40_RS02955 0.59 -0.9
584,913 + ABIE40_RS02955 0.59 -0.6
584,913 + ABIE40_RS02955 0.59 -2.0
584,913 + ABIE40_RS02955 0.59 -1.3
584,913 + ABIE40_RS02955 0.59 -0.0
584,913 + ABIE40_RS02955 0.59 +1.7
584,913 + ABIE40_RS02955 0.59 -0.6
584,914 - ABIE40_RS02955 0.60 +0.7
584,914 - ABIE40_RS02955 0.60 +0.7
584,914 - ABIE40_RS02955 0.60 +0.1
584,914 - ABIE40_RS02955 0.60 -0.7
584,914 - ABIE40_RS02955 0.60 -0.6
584,914 - ABIE40_RS02955 0.60 -0.9
584,914 - ABIE40_RS02955 0.60 -2.1
584,914 - ABIE40_RS02955 0.60 -0.3
584,914 - ABIE40_RS02955 0.60 -3.8
584,917 + ABIE40_RS02955 0.60 +2.7
584,917 + ABIE40_RS02955 0.60 +0.4
584,918 - ABIE40_RS02955 0.60 +1.4
584,918 - ABIE40_RS02955 0.60 -0.2
584,969 - ABIE40_RS02955 0.67 +0.3
584,978 - ABIE40_RS02955 0.68 +1.0
584,978 - ABIE40_RS02955 0.68 -0.3
585,046 - ABIE40_RS02955 0.78 -1.4
585,064 + ABIE40_RS02955 0.80 -1.4
585,065 - ABIE40_RS02955 0.80 -2.7
585,300 + -0.4
585,363 + -1.0
585,363 + -0.3
585,363 + -1.6
585,364 - +0.8
585,364 - -1.4
585,364 - -1.5
585,365 + +3.5
585,366 - -2.5
585,366 - -1.0
585,366 - -1.6
585,366 - +1.1
585,431 + ABIE40_RS02960 0.15 -1.0
585,431 + ABIE40_RS02960 0.15 +0.3
585,432 - ABIE40_RS02960 0.15 +1.8
585,432 - ABIE40_RS02960 0.15 +0.1
585,474 + ABIE40_RS02960 0.18 +0.2
585,475 - ABIE40_RS02960 0.18 -0.6
585,475 - ABIE40_RS02960 0.18 -3.1
585,475 - ABIE40_RS02960 0.18 -0.0
585,654 - ABIE40_RS02960 0.31 -1.5
585,722 + ABIE40_RS02960 0.35 -1.8
585,723 - ABIE40_RS02960 0.35 -0.4
585,782 + ABIE40_RS02960 0.40 +0.7
585,783 - ABIE40_RS02960 0.40 -2.5
585,887 + ABIE40_RS02960 0.47 +0.5
585,887 + ABIE40_RS02960 0.47 -0.5
585,993 + ABIE40_RS02960 0.55 +0.4
585,993 + ABIE40_RS02960 0.55 -0.7
586,499 + -1.0
586,500 - +0.6
586,503 + -0.5
586,503 + -1.1
586,503 + -1.1
586,504 - -0.6
586,504 - -0.1
586,504 - -0.6
586,620 + -0.8
586,620 + -1.8
586,760 + ABIE40_RS02965 0.24 +1.4
586,760 + ABIE40_RS02965 0.24 -1.4
586,760 + ABIE40_RS02965 0.24 -1.8
586,760 + ABIE40_RS02965 0.24 +0.5
586,760 + ABIE40_RS02965 0.24 +1.1
586,760 + ABIE40_RS02965 0.24 -0.0
586,761 - ABIE40_RS02965 0.25 -3.1
586,761 - ABIE40_RS02965 0.25 +1.1
586,761 - ABIE40_RS02965 0.25 +3.0
586,761 - ABIE40_RS02965 0.25 -0.2
586,761 - ABIE40_RS02965 0.25 +1.1
586,761 - ABIE40_RS02965 0.25 -2.4
586,795 + ABIE40_RS02965 0.31 +0.7
587,066 + ABIE40_RS02965 0.80 -0.3
587,066 + ABIE40_RS02965 0.80 +0.9
587,066 + ABIE40_RS02965 0.80 +0.3
587,066 + ABIE40_RS02965 0.80 +0.1
587,066 + ABIE40_RS02965 0.80 -1.3
587,066 + ABIE40_RS02965 0.80 +1.3
587,066 + ABIE40_RS02965 0.80 +3.3
587,066 + ABIE40_RS02965 0.80 -0.9
587,066 + ABIE40_RS02965 0.80 +0.5
587,066 + ABIE40_RS02965 0.80 +0.0
587,066 + ABIE40_RS02965 0.80 +0.1
587,066 + ABIE40_RS02965 0.80 -1.0
587,066 + ABIE40_RS02965 0.80 -0.4
587,066 + ABIE40_RS02965 0.80 +0.5
587,066 + ABIE40_RS02965 0.80 -1.2
587,066 + ABIE40_RS02965 0.80 +0.1
587,066 + ABIE40_RS02965 0.80 +0.8
587,066 + ABIE40_RS02965 0.80 +0.7
587,067 - ABIE40_RS02965 0.80 +2.6
587,067 - ABIE40_RS02965 0.80 +0.5
587,067 - ABIE40_RS02965 0.80 +0.4
587,067 - ABIE40_RS02965 0.80 +0.7
587,067 - ABIE40_RS02965 0.80 +0.8
587,067 - ABIE40_RS02965 0.80 -0.5
587,067 - ABIE40_RS02965 0.80 +0.5
587,067 - ABIE40_RS02965 0.80 -2.1
587,067 - ABIE40_RS02965 0.80 -0.6
587,067 - ABIE40_RS02965 0.80 -1.9
587,067 - ABIE40_RS02965 0.80 -1.1
587,067 - ABIE40_RS02965 0.80 +0.9
587,067 - ABIE40_RS02965 0.80 +1.3
587,067 - ABIE40_RS02965 0.80 +0.9
587,168 + -0.8
587,168 + -0.3
587,168 + +0.1
587,169 - +2.3
587,169 - -0.3
587,174 + +2.7
587,175 - -1.5
587,175 - -0.1

Or see this region's nucleotide sequence