Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01560

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01555 and ABIE40_RS01560 are separated by 189 nucleotidesABIE40_RS01560 and ABIE40_RS01565 overlap by 1 nucleotides ABIE40_RS01555: ABIE40_RS01555 - urocanate hydratase, at 304,308 to 305,969 _RS01555 ABIE40_RS01560: ABIE40_RS01560 - DUF917 family protein, at 306,159 to 307,256 _RS01560 ABIE40_RS01565: ABIE40_RS01565 - Zn-dependent hydrolase, at 307,256 to 308,518 _RS01565 Position (kb) 306 307 308Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 305.159 kb on - strand, within ABIE40_RS01555at 305.159 kb on - strand, within ABIE40_RS01555at 305.159 kb on - strand, within ABIE40_RS01555at 305.159 kb on - strand, within ABIE40_RS01555at 305.159 kb on - strand, within ABIE40_RS01555at 305.159 kb on - strand, within ABIE40_RS01555at 305.165 kb on - strand, within ABIE40_RS01555at 305.319 kb on - strand, within ABIE40_RS01555at 305.402 kb on + strand, within ABIE40_RS01555at 305.530 kb on + strand, within ABIE40_RS01555at 305.530 kb on + strand, within ABIE40_RS01555at 305.530 kb on + strand, within ABIE40_RS01555at 305.530 kb on + strand, within ABIE40_RS01555at 305.530 kb on + strand, within ABIE40_RS01555at 305.530 kb on + strand, within ABIE40_RS01555at 305.530 kb on + strand, within ABIE40_RS01555at 305.531 kb on - strand, within ABIE40_RS01555at 305.531 kb on - strand, within ABIE40_RS01555at 305.531 kb on - strand, within ABIE40_RS01555at 305.561 kb on + strand, within ABIE40_RS01555at 305.561 kb on + strand, within ABIE40_RS01555at 305.562 kb on - strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.563 kb on + strand, within ABIE40_RS01555at 305.564 kb on - strand, within ABIE40_RS01555at 305.564 kb on - strand, within ABIE40_RS01555at 305.564 kb on - strand, within ABIE40_RS01555at 305.564 kb on - strand, within ABIE40_RS01555at 305.564 kb on - strand, within ABIE40_RS01555at 305.623 kb on + strand, within ABIE40_RS01555at 305.623 kb on + strand, within ABIE40_RS01555at 305.623 kb on + strand, within ABIE40_RS01555at 305.623 kb on + strand, within ABIE40_RS01555at 305.624 kb on - strand, within ABIE40_RS01555at 305.624 kb on - strand, within ABIE40_RS01555at 305.628 kb on + strand, within ABIE40_RS01555at 305.628 kb on + strand, within ABIE40_RS01555at 305.628 kb on + strand, within ABIE40_RS01555at 305.628 kb on + strand, within ABIE40_RS01555at 305.629 kb on - strand, within ABIE40_RS01555at 305.629 kb on - strand, within ABIE40_RS01555at 305.629 kb on - strand, within ABIE40_RS01555at 305.629 kb on - strand, within ABIE40_RS01555at 305.777 kb on + strand, within ABIE40_RS01555at 305.778 kb on - strand, within ABIE40_RS01555at 305.824 kb on + strandat 305.824 kb on + strandat 305.825 kb on - strandat 306.263 kb on + strandat 306.264 kb on - strandat 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.406 kb on + strand, within ABIE40_RS01560at 306.406 kb on + strand, within ABIE40_RS01560at 306.406 kb on + strand, within ABIE40_RS01560at 306.406 kb on + strand, within ABIE40_RS01560at 306.407 kb on - strand, within ABIE40_RS01560at 306.407 kb on - strand, within ABIE40_RS01560at 306.407 kb on - strand, within ABIE40_RS01560at 306.407 kb on - strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.424 kb on - strand, within ABIE40_RS01560at 306.424 kb on - strand, within ABIE40_RS01560at 306.437 kb on + strand, within ABIE40_RS01560at 306.527 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.767 kb on + strand, within ABIE40_RS01560at 306.768 kb on - strand, within ABIE40_RS01560at 306.768 kb on - strand, within ABIE40_RS01560at 306.769 kb on + strand, within ABIE40_RS01560at 306.977 kb on + strand, within ABIE40_RS01560at 306.978 kb on - strand, within ABIE40_RS01560at 307.018 kb on + strand, within ABIE40_RS01560at 307.018 kb on + strand, within ABIE40_RS01560at 307.018 kb on + strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.245 kb on + strandat 307.245 kb on + strandat 307.246 kb on - strandat 307.530 kb on + strand, within ABIE40_RS01565at 307.530 kb on + strand, within ABIE40_RS01565at 307.531 kb on - strand, within ABIE40_RS01565at 307.531 kb on - strand, within ABIE40_RS01565at 307.583 kb on + strand, within ABIE40_RS01565at 307.584 kb on - strand, within ABIE40_RS01565at 307.834 kb on + strand, within ABIE40_RS01565at 307.834 kb on + strand, within ABIE40_RS01565at 307.834 kb on + strand, within ABIE40_RS01565

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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305,159 - ABIE40_RS01555 0.51 -0.3
305,159 - ABIE40_RS01555 0.51 +0.2
305,159 - ABIE40_RS01555 0.51 -0.8
305,159 - ABIE40_RS01555 0.51 +0.6
305,159 - ABIE40_RS01555 0.51 -2.4
305,159 - ABIE40_RS01555 0.51 -1.4
305,165 - ABIE40_RS01555 0.52 +1.6
305,319 - ABIE40_RS01555 0.61 -1.9
305,402 + ABIE40_RS01555 0.66 -0.6
305,530 + ABIE40_RS01555 0.74 +0.7
305,530 + ABIE40_RS01555 0.74 +0.3
305,530 + ABIE40_RS01555 0.74 -1.1
305,530 + ABIE40_RS01555 0.74 -1.4
305,530 + ABIE40_RS01555 0.74 -0.1
305,530 + ABIE40_RS01555 0.74 -0.8
305,530 + ABIE40_RS01555 0.74 +0.4
305,531 - ABIE40_RS01555 0.74 -0.6
305,531 - ABIE40_RS01555 0.74 -2.2
305,531 - ABIE40_RS01555 0.74 -0.6
305,561 + ABIE40_RS01555 0.75 -0.3
305,561 + ABIE40_RS01555 0.75 +0.5
305,562 - ABIE40_RS01555 0.75 +0.4
305,563 + ABIE40_RS01555 0.76 -1.8
305,563 + ABIE40_RS01555 0.76 +0.8
305,563 + ABIE40_RS01555 0.76 +0.2
305,563 + ABIE40_RS01555 0.76 +0.0
305,563 + ABIE40_RS01555 0.76 -1.2
305,563 + ABIE40_RS01555 0.76 -0.8
305,563 + ABIE40_RS01555 0.76 +1.4
305,563 + ABIE40_RS01555 0.76 -0.8
305,563 + ABIE40_RS01555 0.76 +0.2
305,563 + ABIE40_RS01555 0.76 -1.1
305,563 + ABIE40_RS01555 0.76 -0.4
305,564 - ABIE40_RS01555 0.76 -1.5
305,564 - ABIE40_RS01555 0.76 -0.7
305,564 - ABIE40_RS01555 0.76 +0.8
305,564 - ABIE40_RS01555 0.76 -1.3
305,564 - ABIE40_RS01555 0.76 +0.6
305,623 + ABIE40_RS01555 0.79 -1.0
305,623 + ABIE40_RS01555 0.79 -1.2
305,623 + ABIE40_RS01555 0.79 +0.9
305,623 + ABIE40_RS01555 0.79 +0.2
305,624 - ABIE40_RS01555 0.79 -0.3
305,624 - ABIE40_RS01555 0.79 -0.8
305,628 + ABIE40_RS01555 0.79 +1.6
305,628 + ABIE40_RS01555 0.79 +2.6
305,628 + ABIE40_RS01555 0.79 +1.8
305,628 + ABIE40_RS01555 0.79 -0.5
305,629 - ABIE40_RS01555 0.79 +0.4
305,629 - ABIE40_RS01555 0.79 -0.9
305,629 - ABIE40_RS01555 0.79 -1.5
305,629 - ABIE40_RS01555 0.79 -0.3
305,777 + ABIE40_RS01555 0.88 -1.3
305,778 - ABIE40_RS01555 0.88 -0.5
305,824 + -0.3
305,824 + -0.7
305,825 - +0.4
306,263 + -1.0
306,264 - -2.2
306,290 + ABIE40_RS01560 0.12 -0.7
306,290 + ABIE40_RS01560 0.12 +0.1
306,290 + ABIE40_RS01560 0.12 -0.2
306,290 + ABIE40_RS01560 0.12 -0.2
306,290 + ABIE40_RS01560 0.12 +1.2
306,290 + ABIE40_RS01560 0.12 +1.6
306,290 + ABIE40_RS01560 0.12 -1.5
306,290 + ABIE40_RS01560 0.12 -2.1
306,290 + ABIE40_RS01560 0.12 +0.1
306,291 - ABIE40_RS01560 0.12 +0.7
306,291 - ABIE40_RS01560 0.12 +0.4
306,291 - ABIE40_RS01560 0.12 +1.4
306,291 - ABIE40_RS01560 0.12 +0.8
306,291 - ABIE40_RS01560 0.12 -0.1
306,291 - ABIE40_RS01560 0.12 +2.4
306,291 - ABIE40_RS01560 0.12 -0.7
306,296 + ABIE40_RS01560 0.12 +1.0
306,296 + ABIE40_RS01560 0.12 -1.4
306,296 + ABIE40_RS01560 0.12 +1.4
306,296 + ABIE40_RS01560 0.12 +0.8
306,296 + ABIE40_RS01560 0.12 -1.2
306,296 + ABIE40_RS01560 0.12 +1.1
306,296 + ABIE40_RS01560 0.12 +0.6
306,296 + ABIE40_RS01560 0.12 -0.9
306,296 + ABIE40_RS01560 0.12 -0.6
306,296 + ABIE40_RS01560 0.12 -0.5
306,296 + ABIE40_RS01560 0.12 +1.1
306,296 + ABIE40_RS01560 0.12 -1.3
306,296 + ABIE40_RS01560 0.12 -0.6
306,296 + ABIE40_RS01560 0.12 -1.6
306,296 + ABIE40_RS01560 0.12 -0.7
306,296 + ABIE40_RS01560 0.12 -1.9
306,297 - ABIE40_RS01560 0.13 +0.3
306,297 - ABIE40_RS01560 0.13 -0.5
306,297 - ABIE40_RS01560 0.13 -2.0
306,297 - ABIE40_RS01560 0.13 -0.5
306,297 - ABIE40_RS01560 0.13 -0.4
306,297 - ABIE40_RS01560 0.13 -1.5
306,297 - ABIE40_RS01560 0.13 -0.9
306,297 - ABIE40_RS01560 0.13 -0.4
306,297 - ABIE40_RS01560 0.13 -0.7
306,297 - ABIE40_RS01560 0.13 -0.8
306,297 - ABIE40_RS01560 0.13 -0.8
306,297 - ABIE40_RS01560 0.13 -1.1
306,297 - ABIE40_RS01560 0.13 +1.5
306,297 - ABIE40_RS01560 0.13 +0.6
306,297 - ABIE40_RS01560 0.13 +0.8
306,297 - ABIE40_RS01560 0.13 +2.4
306,297 - ABIE40_RS01560 0.13 +0.3
306,297 - ABIE40_RS01560 0.13 +0.3
306,297 - ABIE40_RS01560 0.13 -1.6
306,297 - ABIE40_RS01560 0.13 -1.4
306,406 + ABIE40_RS01560 0.22 +1.2
306,406 + ABIE40_RS01560 0.22 -1.6
306,406 + ABIE40_RS01560 0.22 +0.3
306,406 + ABIE40_RS01560 0.22 -0.0
306,407 - ABIE40_RS01560 0.23 +0.9
306,407 - ABIE40_RS01560 0.23 +0.9
306,407 - ABIE40_RS01560 0.23 +0.0
306,407 - ABIE40_RS01560 0.23 -1.8
306,423 + ABIE40_RS01560 0.24 +0.2
306,423 + ABIE40_RS01560 0.24 +0.5
306,423 + ABIE40_RS01560 0.24 -1.6
306,423 + ABIE40_RS01560 0.24 -1.1
306,423 + ABIE40_RS01560 0.24 +0.7
306,423 + ABIE40_RS01560 0.24 +0.5
306,423 + ABIE40_RS01560 0.24 -1.4
306,424 - ABIE40_RS01560 0.24 +0.4
306,424 - ABIE40_RS01560 0.24 +0.4
306,437 + ABIE40_RS01560 0.25 +3.8
306,527 + ABIE40_RS01560 0.34 -1.8
306,655 + ABIE40_RS01560 0.45 -0.2
306,655 + ABIE40_RS01560 0.45 +1.4
306,655 + ABIE40_RS01560 0.45 +1.6
306,655 + ABIE40_RS01560 0.45 +1.8
306,655 + ABIE40_RS01560 0.45 +0.2
306,655 + ABIE40_RS01560 0.45 +1.3
306,656 - ABIE40_RS01560 0.45 -2.6
306,656 - ABIE40_RS01560 0.45 -0.4
306,656 - ABIE40_RS01560 0.45 -1.6
306,656 - ABIE40_RS01560 0.45 -1.1
306,656 - ABIE40_RS01560 0.45 -0.9
306,656 - ABIE40_RS01560 0.45 -0.2
306,656 - ABIE40_RS01560 0.45 -0.6
306,656 - ABIE40_RS01560 0.45 +0.3
306,767 + ABIE40_RS01560 0.55 -0.3
306,768 - ABIE40_RS01560 0.55 +1.1
306,768 - ABIE40_RS01560 0.55 +0.2
306,769 + ABIE40_RS01560 0.56 -0.4
306,977 + ABIE40_RS01560 0.74 -0.7
306,978 - ABIE40_RS01560 0.75 +1.4
307,018 + ABIE40_RS01560 0.78 +0.7
307,018 + ABIE40_RS01560 0.78 -1.5
307,018 + ABIE40_RS01560 0.78 -1.2
307,019 - ABIE40_RS01560 0.78 -1.5
307,019 - ABIE40_RS01560 0.78 -0.1
307,019 - ABIE40_RS01560 0.78 -0.2
307,019 - ABIE40_RS01560 0.78 -0.7
307,019 - ABIE40_RS01560 0.78 +0.5
307,019 - ABIE40_RS01560 0.78 +1.6
307,245 + +0.4
307,245 + -1.0
307,246 - -2.0
307,530 + ABIE40_RS01565 0.22 +1.0
307,530 + ABIE40_RS01565 0.22 -0.1
307,531 - ABIE40_RS01565 0.22 -0.6
307,531 - ABIE40_RS01565 0.22 +0.2
307,583 + ABIE40_RS01565 0.26 +0.4
307,584 - ABIE40_RS01565 0.26 -1.9
307,834 + ABIE40_RS01565 0.46 -0.9
307,834 + ABIE40_RS01565 0.46 +0.7
307,834 + ABIE40_RS01565 0.46 -0.3

Or see this region's nucleotide sequence