Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01485

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01480 and ABIE40_RS01485 overlap by 4 nucleotidesABIE40_RS01485 and ABIE40_RS01490 are separated by 590 nucleotides ABIE40_RS01480: ABIE40_RS01480 - MFS transporter, at 290,563 to 291,852 _RS01480 ABIE40_RS01485: ABIE40_RS01485 - FadR/GntR family transcriptional regulator, at 291,849 to 292,526 _RS01485 ABIE40_RS01490: ABIE40_RS01490 - class II glutamine amidotransferase, at 293,117 to 293,926 _RS01490 Position (kb) 291 292 293Strain fitness (log2 ratio) -2 -1 0 1 2 3at 290.956 kb on + strand, within ABIE40_RS01480at 290.957 kb on - strand, within ABIE40_RS01480at 291.086 kb on + strand, within ABIE40_RS01480at 291.086 kb on + strand, within ABIE40_RS01480at 291.086 kb on + strand, within ABIE40_RS01480at 291.086 kb on + strand, within ABIE40_RS01480at 291.086 kb on + strand, within ABIE40_RS01480at 291.087 kb on - strand, within ABIE40_RS01480at 291.087 kb on - strand, within ABIE40_RS01480at 291.344 kb on + strand, within ABIE40_RS01480at 291.344 kb on + strand, within ABIE40_RS01480at 291.345 kb on - strand, within ABIE40_RS01480at 291.706 kb on + strand, within ABIE40_RS01480at 291.706 kb on + strand, within ABIE40_RS01480at 291.706 kb on + strand, within ABIE40_RS01480at 291.707 kb on - strand, within ABIE40_RS01480at 291.729 kb on + strandat 291.730 kb on - strandat 291.777 kb on + strandat 291.954 kb on - strand, within ABIE40_RS01485at 291.954 kb on - strand, within ABIE40_RS01485at 291.971 kb on + strand, within ABIE40_RS01485at 291.971 kb on + strand, within ABIE40_RS01485at 291.972 kb on - strand, within ABIE40_RS01485at 292.043 kb on - strand, within ABIE40_RS01485at 292.043 kb on - strand, within ABIE40_RS01485at 292.043 kb on - strand, within ABIE40_RS01485at 292.043 kb on - strand, within ABIE40_RS01485at 292.043 kb on - strand, within ABIE40_RS01485at 292.138 kb on + strand, within ABIE40_RS01485at 292.138 kb on + strand, within ABIE40_RS01485at 292.138 kb on + strand, within ABIE40_RS01485at 292.138 kb on + strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.139 kb on - strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.315 kb on + strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.316 kb on - strand, within ABIE40_RS01485at 292.345 kb on + strand, within ABIE40_RS01485at 292.345 kb on + strand, within ABIE40_RS01485at 292.346 kb on - strand, within ABIE40_RS01485at 292.346 kb on - strand, within ABIE40_RS01485at 292.346 kb on - strand, within ABIE40_RS01485at 292.533 kb on - strandat 292.539 kb on - strandat 292.564 kb on - strandat 292.675 kb on + strandat 292.676 kb on - strandat 292.676 kb on - strandat 292.735 kb on - strandat 292.754 kb on + strandat 292.754 kb on + strandat 292.754 kb on + strandat 292.755 kb on - strandat 292.755 kb on - strandat 292.755 kb on - strandat 292.755 kb on - strandat 292.755 kb on - strandat 293.002 kb on + strandat 293.036 kb on + strandat 293.037 kb on - strandat 293.040 kb on + strandat 293.040 kb on + strandat 293.041 kb on - strandat 293.041 kb on - strandat 293.041 kb on - strandat 293.153 kb on + strandat 293.261 kb on + strand, within ABIE40_RS01490at 293.261 kb on + strand, within ABIE40_RS01490at 293.297 kb on - strand, within ABIE40_RS01490at 293.299 kb on - strand, within ABIE40_RS01490at 293.443 kb on + strand, within ABIE40_RS01490at 293.444 kb on - strand, within ABIE40_RS01490at 293.444 kb on - strand, within ABIE40_RS01490

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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290,956 + ABIE40_RS01480 0.30 -1.2
290,957 - ABIE40_RS01480 0.31 -0.1
291,086 + ABIE40_RS01480 0.41 -2.0
291,086 + ABIE40_RS01480 0.41 -0.4
291,086 + ABIE40_RS01480 0.41 +0.9
291,086 + ABIE40_RS01480 0.41 +0.4
291,086 + ABIE40_RS01480 0.41 -0.2
291,087 - ABIE40_RS01480 0.41 -0.2
291,087 - ABIE40_RS01480 0.41 -0.3
291,344 + ABIE40_RS01480 0.61 -1.2
291,344 + ABIE40_RS01480 0.61 -2.3
291,345 - ABIE40_RS01480 0.61 +1.1
291,706 + ABIE40_RS01480 0.89 +0.1
291,706 + ABIE40_RS01480 0.89 -0.9
291,706 + ABIE40_RS01480 0.89 -0.3
291,707 - ABIE40_RS01480 0.89 -1.6
291,729 + +2.7
291,730 - -0.7
291,777 + +1.1
291,954 - ABIE40_RS01485 0.15 -1.7
291,954 - ABIE40_RS01485 0.15 -1.4
291,971 + ABIE40_RS01485 0.18 +0.4
291,971 + ABIE40_RS01485 0.18 +0.6
291,972 - ABIE40_RS01485 0.18 +1.1
292,043 - ABIE40_RS01485 0.29 -0.7
292,043 - ABIE40_RS01485 0.29 +2.5
292,043 - ABIE40_RS01485 0.29 -0.6
292,043 - ABIE40_RS01485 0.29 -1.5
292,043 - ABIE40_RS01485 0.29 +0.6
292,138 + ABIE40_RS01485 0.43 -1.2
292,138 + ABIE40_RS01485 0.43 +0.1
292,138 + ABIE40_RS01485 0.43 -0.1
292,138 + ABIE40_RS01485 0.43 -0.9
292,139 - ABIE40_RS01485 0.43 +0.2
292,139 - ABIE40_RS01485 0.43 +0.1
292,139 - ABIE40_RS01485 0.43 +3.4
292,139 - ABIE40_RS01485 0.43 +0.1
292,139 - ABIE40_RS01485 0.43 +1.3
292,139 - ABIE40_RS01485 0.43 -0.8
292,139 - ABIE40_RS01485 0.43 -0.6
292,139 - ABIE40_RS01485 0.43 +1.2
292,315 + ABIE40_RS01485 0.69 -1.1
292,315 + ABIE40_RS01485 0.69 +0.8
292,315 + ABIE40_RS01485 0.69 -2.0
292,315 + ABIE40_RS01485 0.69 -1.1
292,315 + ABIE40_RS01485 0.69 +0.4
292,315 + ABIE40_RS01485 0.69 +0.9
292,315 + ABIE40_RS01485 0.69 +1.4
292,315 + ABIE40_RS01485 0.69 -1.1
292,315 + ABIE40_RS01485 0.69 -1.3
292,316 - ABIE40_RS01485 0.69 +0.2
292,316 - ABIE40_RS01485 0.69 +0.2
292,316 - ABIE40_RS01485 0.69 -0.7
292,316 - ABIE40_RS01485 0.69 +1.0
292,316 - ABIE40_RS01485 0.69 +0.7
292,316 - ABIE40_RS01485 0.69 +0.3
292,316 - ABIE40_RS01485 0.69 -0.7
292,316 - ABIE40_RS01485 0.69 -1.2
292,316 - ABIE40_RS01485 0.69 +0.2
292,345 + ABIE40_RS01485 0.73 -2.0
292,345 + ABIE40_RS01485 0.73 -1.8
292,346 - ABIE40_RS01485 0.73 +0.9
292,346 - ABIE40_RS01485 0.73 +0.1
292,346 - ABIE40_RS01485 0.73 -2.2
292,533 - -1.5
292,539 - -1.9
292,564 - -0.2
292,675 + -1.0
292,676 - -0.6
292,676 - -1.2
292,735 - +0.8
292,754 + +0.8
292,754 + +1.6
292,754 + -1.0
292,755 - -0.3
292,755 - -0.3
292,755 - +1.4
292,755 - -1.4
292,755 - -1.0
293,002 + +0.2
293,036 + -0.5
293,037 - +0.1
293,040 + -1.3
293,040 + +0.6
293,041 - +2.4
293,041 - +1.4
293,041 - +0.2
293,153 + -0.7
293,261 + ABIE40_RS01490 0.18 -0.6
293,261 + ABIE40_RS01490 0.18 +0.3
293,297 - ABIE40_RS01490 0.22 +0.9
293,299 - ABIE40_RS01490 0.22 -0.7
293,443 + ABIE40_RS01490 0.40 -1.3
293,444 - ABIE40_RS01490 0.40 -0.3
293,444 - ABIE40_RS01490 0.40 +0.1

Or see this region's nucleotide sequence