Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01350

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01340 and ABIE40_RS01345 overlap by 4 nucleotidesABIE40_RS01345 and ABIE40_RS01350 overlap by 4 nucleotidesABIE40_RS01350 and ABIE40_RS01355 overlap by 1 nucleotidesABIE40_RS01355 and ABIE40_RS01360 are separated by 114 nucleotides ABIE40_RS01340: ABIE40_RS01340 - NosD domain-containing protein, at 263,781 to 264,830 _RS01340 ABIE40_RS01345: ABIE40_RS01345 - orotidine-5'-phosphate decarboxylase, at 264,827 to 265,525 _RS01345 ABIE40_RS01350: ABIE40_RS01350 - histidine phosphatase family protein, at 265,522 to 266,112 _RS01350 ABIE40_RS01355: ABIE40_RS01355 - phospholipid N-methyltransferase PmtA, at 266,112 to 266,705 _RS01355 ABIE40_RS01360: ABIE40_RS01360 - DNA polymerase III subunit beta, at 266,820 to 267,938 _RS01360 Position (kb) 265 266 267Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 264.534 kb on + strand, within ABIE40_RS01340at 264.534 kb on + strand, within ABIE40_RS01340at 264.592 kb on + strand, within ABIE40_RS01340at 264.612 kb on + strand, within ABIE40_RS01340at 264.612 kb on + strand, within ABIE40_RS01340at 264.612 kb on + strand, within ABIE40_RS01340at 264.613 kb on - strand, within ABIE40_RS01340at 264.613 kb on - strand, within ABIE40_RS01340at 264.613 kb on - strand, within ABIE40_RS01340at 264.740 kb on + strandat 264.740 kb on + strandat 264.740 kb on + strandat 264.741 kb on - strandat 264.741 kb on - strandat 264.741 kb on - strandat 264.741 kb on - strandat 264.774 kb on - strandat 264.794 kb on + strandat 264.794 kb on + strandat 264.795 kb on - strandat 264.795 kb on - strandat 264.795 kb on - strandat 264.795 kb on - strandat 265.571 kb on - strandat 265.598 kb on + strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.599 kb on - strand, within ABIE40_RS01350at 265.600 kb on + strand, within ABIE40_RS01350at 265.669 kb on + strand, within ABIE40_RS01350at 265.669 kb on + strand, within ABIE40_RS01350at 265.669 kb on + strand, within ABIE40_RS01350at 265.669 kb on + strand, within ABIE40_RS01350at 265.670 kb on - strand, within ABIE40_RS01350at 265.755 kb on + strand, within ABIE40_RS01350at 265.931 kb on - strand, within ABIE40_RS01350at 266.081 kb on - strandat 266.081 kb on - strandat 266.094 kb on + strandat 266.097 kb on + strandat 266.097 kb on + strandat 266.097 kb on + strandat 266.097 kb on + strandat 266.097 kb on + strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.098 kb on - strandat 266.099 kb on + strandat 266.099 kb on + strandat 266.099 kb on + strandat 266.099 kb on + strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.100 kb on - strandat 266.125 kb on + strandat 266.125 kb on + strandat 266.126 kb on - strandat 266.185 kb on + strand, within ABIE40_RS01355at 266.185 kb on + strand, within ABIE40_RS01355at 266.186 kb on - strand, within ABIE40_RS01355at 266.224 kb on + strand, within ABIE40_RS01355at 266.224 kb on + strand, within ABIE40_RS01355at 266.225 kb on - strand, within ABIE40_RS01355at 266.372 kb on + strand, within ABIE40_RS01355at 266.372 kb on + strand, within ABIE40_RS01355at 266.416 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.437 kb on + strand, within ABIE40_RS01355at 266.438 kb on - strand, within ABIE40_RS01355at 266.438 kb on - strand, within ABIE40_RS01355at 266.438 kb on - strand, within ABIE40_RS01355at 266.438 kb on - strand, within ABIE40_RS01355at 266.438 kb on - strand, within ABIE40_RS01355at 266.562 kb on + strand, within ABIE40_RS01355at 266.562 kb on + strand, within ABIE40_RS01355at 266.562 kb on + strand, within ABIE40_RS01355at 266.562 kb on + strand, within ABIE40_RS01355at 266.563 kb on - strand, within ABIE40_RS01355at 266.563 kb on - strand, within ABIE40_RS01355at 266.588 kb on + strand, within ABIE40_RS01355at 266.600 kb on + strand, within ABIE40_RS01355at 266.600 kb on + strand, within ABIE40_RS01355at 266.600 kb on + strand, within ABIE40_RS01355at 266.601 kb on - strand, within ABIE40_RS01355at 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.743 kb on + strandat 266.744 kb on - strandat 266.744 kb on - strandat 266.744 kb on - strandat 266.763 kb on + strandat 266.763 kb on + strandat 266.763 kb on + strandat 266.764 kb on - strandat 266.764 kb on - strandat 266.764 kb on - strandat 266.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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264,534 + ABIE40_RS01340 0.72 -1.0
264,534 + ABIE40_RS01340 0.72 -0.6
264,592 + ABIE40_RS01340 0.77 +0.7
264,612 + ABIE40_RS01340 0.79 +0.2
264,612 + ABIE40_RS01340 0.79 +1.4
264,612 + ABIE40_RS01340 0.79 +0.3
264,613 - ABIE40_RS01340 0.79 +4.4
264,613 - ABIE40_RS01340 0.79 -0.9
264,613 - ABIE40_RS01340 0.79 +0.3
264,740 + -0.1
264,740 + -1.2
264,740 + +1.3
264,741 - +0.1
264,741 - +1.3
264,741 - -1.5
264,741 - -0.9
264,774 - -1.1
264,794 + -0.9
264,794 + -1.2
264,795 - -2.2
264,795 - -0.5
264,795 - -1.9
264,795 - -0.4
265,571 - -2.6
265,598 + ABIE40_RS01350 0.13 +0.7
265,599 - ABIE40_RS01350 0.13 +1.9
265,599 - ABIE40_RS01350 0.13 -1.6
265,599 - ABIE40_RS01350 0.13 -1.2
265,599 - ABIE40_RS01350 0.13 -1.1
265,599 - ABIE40_RS01350 0.13 -0.1
265,599 - ABIE40_RS01350 0.13 -1.7
265,599 - ABIE40_RS01350 0.13 -1.6
265,599 - ABIE40_RS01350 0.13 -1.2
265,599 - ABIE40_RS01350 0.13 -0.5
265,600 + ABIE40_RS01350 0.13 -0.3
265,669 + ABIE40_RS01350 0.25 +1.8
265,669 + ABIE40_RS01350 0.25 -1.3
265,669 + ABIE40_RS01350 0.25 -0.8
265,669 + ABIE40_RS01350 0.25 -0.4
265,670 - ABIE40_RS01350 0.25 +0.2
265,755 + ABIE40_RS01350 0.39 +0.5
265,931 - ABIE40_RS01350 0.69 -0.8
266,081 - +1.8
266,081 - +0.5
266,094 + -2.5
266,097 + -0.8
266,097 + -1.4
266,097 + -0.1
266,097 + -0.2
266,097 + -2.0
266,098 - -0.8
266,098 - -0.3
266,098 - +2.6
266,098 - -1.6
266,098 - +0.0
266,098 - -0.9
266,098 - -1.9
266,098 - -1.0
266,098 - -1.6
266,099 + +0.3
266,099 + -0.8
266,099 + -1.4
266,099 + -1.0
266,100 - -1.2
266,100 - +0.6
266,100 - -0.8
266,100 - -1.2
266,100 - -1.0
266,100 - +0.8
266,100 - +0.2
266,100 - -0.2
266,100 - -0.4
266,100 - -2.6
266,100 - -0.5
266,125 + -1.1
266,125 + -1.3
266,126 - +0.4
266,185 + ABIE40_RS01355 0.12 -1.5
266,185 + ABIE40_RS01355 0.12 -1.3
266,186 - ABIE40_RS01355 0.12 +0.8
266,224 + ABIE40_RS01355 0.19 -4.1
266,224 + ABIE40_RS01355 0.19 +1.6
266,225 - ABIE40_RS01355 0.19 -0.8
266,372 + ABIE40_RS01355 0.44 +0.4
266,372 + ABIE40_RS01355 0.44 +1.1
266,416 + ABIE40_RS01355 0.51 +0.3
266,437 + ABIE40_RS01355 0.55 +0.2
266,437 + ABIE40_RS01355 0.55 -2.1
266,437 + ABIE40_RS01355 0.55 +1.8
266,437 + ABIE40_RS01355 0.55 -1.6
266,437 + ABIE40_RS01355 0.55 +0.6
266,437 + ABIE40_RS01355 0.55 -2.5
266,437 + ABIE40_RS01355 0.55 +0.5
266,437 + ABIE40_RS01355 0.55 +1.6
266,437 + ABIE40_RS01355 0.55 +0.4
266,438 - ABIE40_RS01355 0.55 -0.9
266,438 - ABIE40_RS01355 0.55 -0.4
266,438 - ABIE40_RS01355 0.55 -2.6
266,438 - ABIE40_RS01355 0.55 +1.1
266,438 - ABIE40_RS01355 0.55 -2.1
266,562 + ABIE40_RS01355 0.76 -0.7
266,562 + ABIE40_RS01355 0.76 -0.8
266,562 + ABIE40_RS01355 0.76 -2.7
266,562 + ABIE40_RS01355 0.76 -1.2
266,563 - ABIE40_RS01355 0.76 -2.9
266,563 - ABIE40_RS01355 0.76 +0.6
266,588 + ABIE40_RS01355 0.80 -0.7
266,600 + ABIE40_RS01355 0.82 -1.6
266,600 + ABIE40_RS01355 0.82 -1.7
266,600 + ABIE40_RS01355 0.82 -1.8
266,601 - ABIE40_RS01355 0.82 +0.9
266,743 + -0.4
266,743 + +0.4
266,743 + -1.5
266,743 + -0.2
266,743 + -0.4
266,743 + +0.4
266,743 + -1.1
266,743 + +0.6
266,743 + -1.2
266,744 - +1.2
266,744 - -1.8
266,744 - +0.8
266,763 + -2.8
266,763 + -0.7
266,763 + +0.1
266,764 - -1.6
266,764 - -1.2
266,764 - +0.0
266,822 - +1.4

Or see this region's nucleotide sequence