Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01150 and ABIE40_RS01155 are separated by 47 nucleotides ABIE40_RS01155 and ABIE40_RS01160 are separated by 266 nucleotides ABIE40_RS01160 and ABIE40_RS01165 overlap by 11 nucleotides ABIE40_RS01165 and ABIE40_RS01170 are separated by 11 nucleotides
ABIE40_RS01150: ABIE40_RS01150 - phenylalanine--tRNA ligase subunit beta, at 228,369 to 230,804
_RS01150
ABIE40_RS01155: ABIE40_RS01155 - hypothetical protein, at 230,852 to 231,145
_RS01155
ABIE40_RS01160: ABIE40_RS01160 - hypothetical protein, at 231,412 to 232,029
_RS01160
ABIE40_RS01165: ABIE40_RS01165 - GNAT family N-acetyltransferase, at 232,019 to 232,462
_RS01165
ABIE40_RS01170: ABIE40_RS01170 - aldo/keto reductase, at 232,474 to 233,421
_RS01170
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 230.802 kb on + strand at 230.802 kb on + strand at 230.802 kb on + strand at 230.802 kb on + strand at 230.802 kb on + strand at 230.802 kb on + strand at 230.802 kb on + strand at 230.803 kb on - strand at 230.803 kb on - strand at 230.803 kb on - strand at 230.803 kb on - strand at 230.853 kb on + strand at 230.908 kb on - strand, within ABIE40_RS01155 at 230.908 kb on - strand, within ABIE40_RS01155 at 230.908 kb on - strand, within ABIE40_RS01155 at 230.908 kb on - strand, within ABIE40_RS01155 at 230.985 kb on + strand, within ABIE40_RS01155 at 230.986 kb on - strand, within ABIE40_RS01155 at 230.986 kb on - strand, within ABIE40_RS01155 at 230.986 kb on - strand, within ABIE40_RS01155 at 230.986 kb on - strand, within ABIE40_RS01155 at 231.028 kb on + strand, within ABIE40_RS01155 at 231.028 kb on + strand, within ABIE40_RS01155 at 231.029 kb on - strand, within ABIE40_RS01155 at 231.112 kb on + strand, within ABIE40_RS01155 at 231.112 kb on + strand, within ABIE40_RS01155 at 231.112 kb on + strand, within ABIE40_RS01155 at 231.113 kb on - strand, within ABIE40_RS01155 at 231.113 kb on - strand, within ABIE40_RS01155 at 231.113 kb on - strand, within ABIE40_RS01155 at 231.113 kb on - strand, within ABIE40_RS01155 at 231.174 kb on + strand at 231.178 kb on + strand at 231.184 kb on + strand at 231.189 kb on + strand at 231.190 kb on - strand at 231.240 kb on - strand at 231.240 kb on - strand at 231.280 kb on + strand at 231.281 kb on - strand at 231.281 kb on - strand at 231.282 kb on + strand at 231.282 kb on + strand at 231.296 kb on + strand at 231.296 kb on + strand at 231.296 kb on + strand at 231.296 kb on + strand at 231.296 kb on + strand at 231.297 kb on - strand at 231.297 kb on - strand at 231.297 kb on - strand at 231.297 kb on - strand at 231.297 kb on - strand at 231.297 kb on - strand at 231.297 kb on - strand at 231.297 kb on - strand at 231.297 kb on - strand at 231.392 kb on + strand at 231.517 kb on + strand, within ABIE40_RS01160 at 231.517 kb on + strand, within ABIE40_RS01160 at 231.524 kb on + strand, within ABIE40_RS01160 at 231.531 kb on + strand, within ABIE40_RS01160 at 231.532 kb on - strand, within ABIE40_RS01160 at 231.532 kb on - strand, within ABIE40_RS01160 at 231.719 kb on + strand, within ABIE40_RS01160 at 231.719 kb on + strand, within ABIE40_RS01160 at 231.719 kb on + strand, within ABIE40_RS01160 at 231.719 kb on + strand, within ABIE40_RS01160 at 231.719 kb on + strand, within ABIE40_RS01160 at 231.720 kb on - strand, within ABIE40_RS01160 at 231.720 kb on - strand, within ABIE40_RS01160 at 231.720 kb on - strand, within ABIE40_RS01160 at 231.720 kb on - strand, within ABIE40_RS01160 at 231.720 kb on - strand, within ABIE40_RS01160 at 231.720 kb on - strand, within ABIE40_RS01160 at 231.793 kb on + strand, within ABIE40_RS01160 at 231.793 kb on + strand, within ABIE40_RS01160 at 231.794 kb on - strand, within ABIE40_RS01160 at 231.851 kb on - strand, within ABIE40_RS01160 at 231.878 kb on + strand, within ABIE40_RS01160 at 231.879 kb on - strand, within ABIE40_RS01160 at 231.918 kb on + strand, within ABIE40_RS01160 at 231.931 kb on + strand, within ABIE40_RS01160 at 231.931 kb on + strand, within ABIE40_RS01160 at 231.931 kb on + strand, within ABIE40_RS01160 at 231.931 kb on + strand, within ABIE40_RS01160 at 231.931 kb on + strand, within ABIE40_RS01160 at 231.931 kb on + strand, within ABIE40_RS01160 at 231.931 kb on + strand, within ABIE40_RS01160 at 231.931 kb on + strand, within ABIE40_RS01160 at 231.931 kb on + strand, within ABIE40_RS01160 at 231.932 kb on - strand, within ABIE40_RS01160 at 231.932 kb on - strand, within ABIE40_RS01160 at 231.932 kb on - strand, within ABIE40_RS01160 at 231.932 kb on - strand, within ABIE40_RS01160 at 231.932 kb on - strand, within ABIE40_RS01160 at 231.932 kb on - strand, within ABIE40_RS01160 at 231.932 kb on - strand, within ABIE40_RS01160 at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.062 kb on + strand at 232.063 kb on - strand at 232.063 kb on - strand at 232.063 kb on - strand at 232.063 kb on - strand at 232.063 kb on - strand at 232.063 kb on - strand at 232.063 kb on - strand at 232.071 kb on + strand, within ABIE40_RS01165 at 232.071 kb on + strand, within ABIE40_RS01165 at 232.072 kb on - strand, within ABIE40_RS01165 at 232.072 kb on - strand, within ABIE40_RS01165 at 232.113 kb on + strand, within ABIE40_RS01165 at 232.114 kb on - strand, within ABIE40_RS01165 at 232.221 kb on + strand, within ABIE40_RS01165 at 232.221 kb on + strand, within ABIE40_RS01165 at 232.221 kb on + strand, within ABIE40_RS01165 at 232.221 kb on + strand, within ABIE40_RS01165 at 232.222 kb on - strand, within ABIE40_RS01165 at 232.222 kb on - strand, within ABIE40_RS01165 at 232.383 kb on + strand, within ABIE40_RS01165 at 232.383 kb on + strand, within ABIE40_RS01165 at 232.384 kb on - strand, within ABIE40_RS01165 at 232.384 kb on - strand, within ABIE40_RS01165 at 232.395 kb on + strand, within ABIE40_RS01165 at 232.395 kb on + strand, within ABIE40_RS01165 at 232.398 kb on + strand, within ABIE40_RS01165 at 232.566 kb on + strand at 232.566 kb on + strand at 232.567 kb on - strand at 232.567 kb on - strand at 232.677 kb on + strand, within ABIE40_RS01170 at 232.677 kb on + strand, within ABIE40_RS01170 at 232.677 kb on + strand, within ABIE40_RS01170 at 232.677 kb on + strand, within ABIE40_RS01170 at 232.677 kb on + strand, within ABIE40_RS01170 at 232.700 kb on + strand, within ABIE40_RS01170 at 232.747 kb on - strand, within ABIE40_RS01170 at 232.747 kb on - strand, within ABIE40_RS01170 at 232.754 kb on + strand, within ABIE40_RS01170 at 232.755 kb on - strand, within ABIE40_RS01170 at 232.790 kb on + strand, within ABIE40_RS01170 at 232.790 kb on + strand, within ABIE40_RS01170 at 232.790 kb on + strand, within ABIE40_RS01170 at 232.791 kb on - strand, within ABIE40_RS01170 at 232.791 kb on - strand, within ABIE40_RS01170 at 232.791 kb on - strand, within ABIE40_RS01170 at 232.866 kb on + strand, within ABIE40_RS01170 at 232.866 kb on + strand, within ABIE40_RS01170 at 232.866 kb on + strand, within ABIE40_RS01170 at 232.866 kb on + strand, within ABIE40_RS01170 at 232.866 kb on + strand, within ABIE40_RS01170 at 232.866 kb on + strand, within ABIE40_RS01170 at 232.866 kb on + strand, within ABIE40_RS01170 at 232.866 kb on + strand, within ABIE40_RS01170 at 232.866 kb on + strand, within ABIE40_RS01170 at 232.867 kb on - strand, within ABIE40_RS01170 at 232.867 kb on - strand, within ABIE40_RS01170 at 232.867 kb on - strand, within ABIE40_RS01170 at 232.867 kb on - strand, within ABIE40_RS01170 at 232.867 kb on - strand, within ABIE40_RS01170 at 232.868 kb on + strand, within ABIE40_RS01170 at 232.869 kb on - strand, within ABIE40_RS01170 at 232.869 kb on - strand, within ABIE40_RS01170 at 232.869 kb on - strand, within ABIE40_RS01170 at 232.869 kb on - strand, within ABIE40_RS01170 at 232.882 kb on + strand, within ABIE40_RS01170 at 232.883 kb on - strand, within ABIE40_RS01170 at 232.883 kb on - strand, within ABIE40_RS01170 at 232.883 kb on - strand, within ABIE40_RS01170 at 232.883 kb on - strand, within ABIE40_RS01170 at 232.889 kb on + strand, within ABIE40_RS01170 at 232.889 kb on + strand, within ABIE40_RS01170 at 232.890 kb on - strand, within ABIE40_RS01170 at 232.949 kb on + strand, within ABIE40_RS01170 at 232.950 kb on - strand, within ABIE40_RS01170 at 232.950 kb on - strand, within ABIE40_RS01170 at 232.950 kb on - strand, within ABIE40_RS01170 at 232.950 kb on - strand, within ABIE40_RS01170 at 233.000 kb on + strand, within ABIE40_RS01170 at 233.001 kb on - strand, within ABIE40_RS01170 at 233.028 kb on + strand, within ABIE40_RS01170
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 230,802 + -1.2 230,802 + -0.5 230,802 + +0.0 230,802 + +0.6 230,802 + -2.0 230,802 + -0.4 230,802 + +0.0 230,803 - +0.3 230,803 - -0.3 230,803 - -0.6 230,803 - +0.5 230,853 + +0.9 230,908 - ABIE40_RS01155 0.19 +1.8 230,908 - ABIE40_RS01155 0.19 +1.7 230,908 - ABIE40_RS01155 0.19 -0.4 230,908 - ABIE40_RS01155 0.19 +0.4 230,985 + ABIE40_RS01155 0.45 -1.1 230,986 - ABIE40_RS01155 0.46 -0.3 230,986 - ABIE40_RS01155 0.46 -0.2 230,986 - ABIE40_RS01155 0.46 +0.2 230,986 - ABIE40_RS01155 0.46 -2.3 231,028 + ABIE40_RS01155 0.60 +0.6 231,028 + ABIE40_RS01155 0.60 -1.2 231,029 - ABIE40_RS01155 0.60 -0.3 231,112 + ABIE40_RS01155 0.88 -0.5 231,112 + ABIE40_RS01155 0.88 -1.2 231,112 + ABIE40_RS01155 0.88 -0.8 231,113 - ABIE40_RS01155 0.89 +0.1 231,113 - ABIE40_RS01155 0.89 +0.8 231,113 - ABIE40_RS01155 0.89 +1.8 231,113 - ABIE40_RS01155 0.89 +0.3 231,174 + -0.7 231,178 + -2.6 231,184 + +0.4 231,189 + -1.3 231,190 - -0.6 231,240 - -1.8 231,240 - +0.2 231,280 + +3.4 231,281 - -0.8 231,281 - +0.4 231,282 + +1.3 231,282 + +0.7 231,296 + +0.8 231,296 + +0.9 231,296 + -2.8 231,296 + -1.0 231,296 + +0.4 231,297 - -0.0 231,297 - -1.2 231,297 - -2.3 231,297 - -0.9 231,297 - -2.2 231,297 - -0.8 231,297 - +1.0 231,297 - +0.6 231,297 - +0.8 231,392 + -1.9 231,517 + ABIE40_RS01160 0.17 -1.0 231,517 + ABIE40_RS01160 0.17 +0.5 231,524 + ABIE40_RS01160 0.18 -1.7 231,531 + ABIE40_RS01160 0.19 -1.7 231,532 - ABIE40_RS01160 0.19 +1.4 231,532 - ABIE40_RS01160 0.19 -1.7 231,719 + ABIE40_RS01160 0.50 -0.3 231,719 + ABIE40_RS01160 0.50 +2.2 231,719 + ABIE40_RS01160 0.50 -3.1 231,719 + ABIE40_RS01160 0.50 -0.6 231,719 + ABIE40_RS01160 0.50 -2.1 231,720 - ABIE40_RS01160 0.50 -0.1 231,720 - ABIE40_RS01160 0.50 +0.7 231,720 - ABIE40_RS01160 0.50 +0.0 231,720 - ABIE40_RS01160 0.50 +0.7 231,720 - ABIE40_RS01160 0.50 +1.8 231,720 - ABIE40_RS01160 0.50 +0.2 231,793 + ABIE40_RS01160 0.62 +0.8 231,793 + ABIE40_RS01160 0.62 +1.8 231,794 - ABIE40_RS01160 0.62 -2.0 231,851 - ABIE40_RS01160 0.71 -2.1 231,878 + ABIE40_RS01160 0.75 +0.7 231,879 - ABIE40_RS01160 0.76 +1.2 231,918 + ABIE40_RS01160 0.82 +0.6 231,931 + ABIE40_RS01160 0.84 +0.4 231,931 + ABIE40_RS01160 0.84 +1.8 231,931 + ABIE40_RS01160 0.84 -1.7 231,931 + ABIE40_RS01160 0.84 -0.3 231,931 + ABIE40_RS01160 0.84 +0.1 231,931 + ABIE40_RS01160 0.84 +1.0 231,931 + ABIE40_RS01160 0.84 -1.5 231,931 + ABIE40_RS01160 0.84 +0.9 231,931 + ABIE40_RS01160 0.84 -0.8 231,932 - ABIE40_RS01160 0.84 -0.5 231,932 - ABIE40_RS01160 0.84 -0.5 231,932 - ABIE40_RS01160 0.84 -1.1 231,932 - ABIE40_RS01160 0.84 +1.8 231,932 - ABIE40_RS01160 0.84 -1.4 231,932 - ABIE40_RS01160 0.84 -0.8 231,932 - ABIE40_RS01160 0.84 -0.8 232,062 + -1.4 232,062 + -0.3 232,062 + -0.9 232,062 + -0.7 232,062 + +0.0 232,062 + +1.1 232,062 + +0.1 232,062 + +1.2 232,062 + -0.1 232,062 + -1.4 232,062 + +0.5 232,062 + +0.7 232,062 + +0.5 232,062 + +0.7 232,062 + +0.3 232,062 + -0.6 232,062 + -0.1 232,062 + +0.2 232,062 + -1.5 232,063 - -1.1 232,063 - -2.3 232,063 - +0.8 232,063 - +0.7 232,063 - -2.2 232,063 - -0.6 232,063 - +1.1 232,071 + ABIE40_RS01165 0.12 +2.8 232,071 + ABIE40_RS01165 0.12 -1.7 232,072 - ABIE40_RS01165 0.12 -1.7 232,072 - ABIE40_RS01165 0.12 +0.8 232,113 + ABIE40_RS01165 0.21 -0.6 232,114 - ABIE40_RS01165 0.21 -1.1 232,221 + ABIE40_RS01165 0.45 +0.1 232,221 + ABIE40_RS01165 0.45 -0.4 232,221 + ABIE40_RS01165 0.45 -0.1 232,221 + ABIE40_RS01165 0.45 -0.9 232,222 - ABIE40_RS01165 0.46 +1.1 232,222 - ABIE40_RS01165 0.46 -0.5 232,383 + ABIE40_RS01165 0.82 -2.8 232,383 + ABIE40_RS01165 0.82 -1.2 232,384 - ABIE40_RS01165 0.82 -0.8 232,384 - ABIE40_RS01165 0.82 +1.1 232,395 + ABIE40_RS01165 0.85 -0.6 232,395 + ABIE40_RS01165 0.85 -1.9 232,398 + ABIE40_RS01165 0.85 +0.2 232,566 + -1.3 232,566 + -0.2 232,567 - +0.3 232,567 - -0.1 232,677 + ABIE40_RS01170 0.21 -1.6 232,677 + ABIE40_RS01170 0.21 +1.2 232,677 + ABIE40_RS01170 0.21 -0.8 232,677 + ABIE40_RS01170 0.21 +0.5 232,677 + ABIE40_RS01170 0.21 -0.7 232,700 + ABIE40_RS01170 0.24 +2.4 232,747 - ABIE40_RS01170 0.29 -1.0 232,747 - ABIE40_RS01170 0.29 +1.0 232,754 + ABIE40_RS01170 0.30 -0.0 232,755 - ABIE40_RS01170 0.30 +0.1 232,790 + ABIE40_RS01170 0.33 -1.8 232,790 + ABIE40_RS01170 0.33 -1.0 232,790 + ABIE40_RS01170 0.33 +1.1 232,791 - ABIE40_RS01170 0.33 -1.3 232,791 - ABIE40_RS01170 0.33 -1.2 232,791 - ABIE40_RS01170 0.33 +0.4 232,866 + ABIE40_RS01170 0.41 +0.2 232,866 + ABIE40_RS01170 0.41 -0.9 232,866 + ABIE40_RS01170 0.41 -2.9 232,866 + ABIE40_RS01170 0.41 +0.0 232,866 + ABIE40_RS01170 0.41 -0.2 232,866 + ABIE40_RS01170 0.41 -0.3 232,866 + ABIE40_RS01170 0.41 -0.3 232,866 + ABIE40_RS01170 0.41 +0.1 232,866 + ABIE40_RS01170 0.41 -1.6 232,867 - ABIE40_RS01170 0.41 -3.1 232,867 - ABIE40_RS01170 0.41 +0.2 232,867 - ABIE40_RS01170 0.41 -1.5 232,867 - ABIE40_RS01170 0.41 -1.5 232,867 - ABIE40_RS01170 0.41 +0.1 232,868 + ABIE40_RS01170 0.42 -1.7 232,869 - ABIE40_RS01170 0.42 -1.0 232,869 - ABIE40_RS01170 0.42 -1.1 232,869 - ABIE40_RS01170 0.42 -0.8 232,869 - ABIE40_RS01170 0.42 -0.4 232,882 + ABIE40_RS01170 0.43 -0.3 232,883 - ABIE40_RS01170 0.43 +0.1 232,883 - ABIE40_RS01170 0.43 -0.4 232,883 - ABIE40_RS01170 0.43 -1.4 232,883 - ABIE40_RS01170 0.43 +1.1 232,889 + ABIE40_RS01170 0.44 -0.4 232,889 + ABIE40_RS01170 0.44 -0.1 232,890 - ABIE40_RS01170 0.44 -1.1 232,949 + ABIE40_RS01170 0.50 -0.6 232,950 - ABIE40_RS01170 0.50 +0.9 232,950 - ABIE40_RS01170 0.50 +0.0 232,950 - ABIE40_RS01170 0.50 +0.6 232,950 - ABIE40_RS01170 0.50 -1.6 233,000 + ABIE40_RS01170 0.55 +0.2 233,001 - ABIE40_RS01170 0.56 -0.9 233,028 + ABIE40_RS01170 0.58 -0.7
Or see this region's nucleotide sequence