Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS01125 and ABIE40_RS01130 are separated by 197 nucleotides ABIE40_RS01130 and ABIE40_RS01135 are separated by 40 nucleotides ABIE40_RS01135 and ABIE40_RS01140 are separated by 99 nucleotides ABIE40_RS01140 and ABIE40_RS01145 are separated by 29 nucleotides
ABIE40_RS01125: ABIE40_RS01125 - HAMP domain-containing sensor histidine kinase, at 224,086 to 225,477
_RS01125
ABIE40_RS01130: ABIE40_RS01130 - 50S ribosomal protein L35, at 225,675 to 225,878
_RS01130
ABIE40_RS01135: ABIE40_RS01135 - 50S ribosomal protein L20, at 225,919 to 226,323
_RS01135
ABIE40_RS01140: ABIE40_RS01140 - serine/threonine protein phosphatase, at 226,423 to 227,241
_RS01140
ABIE40_RS01145: ABIE40_RS01145 - phenylalanine--tRNA ligase subunit alpha, at 227,271 to 228,353
_RS01145
Position (kb) 226
227
228 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 225.489 kb on + strand at 226.273 kb on + strand, within ABIE40_RS01135 at 226.321 kb on + strand at 226.389 kb on + strand at 226.389 kb on + strand at 226.390 kb on - strand at 226.468 kb on - strand at 226.468 kb on - strand at 226.565 kb on - strand, within ABIE40_RS01140 at 226.738 kb on + strand, within ABIE40_RS01140 at 226.738 kb on + strand, within ABIE40_RS01140 at 226.738 kb on + strand, within ABIE40_RS01140 at 226.738 kb on + strand, within ABIE40_RS01140 at 226.738 kb on - strand, within ABIE40_RS01140 at 226.739 kb on - strand, within ABIE40_RS01140 at 226.739 kb on - strand, within ABIE40_RS01140 at 226.739 kb on - strand, within ABIE40_RS01140 at 226.739 kb on - strand, within ABIE40_RS01140 at 226.739 kb on - strand, within ABIE40_RS01140 at 226.739 kb on - strand, within ABIE40_RS01140 at 226.739 kb on - strand, within ABIE40_RS01140 at 226.796 kb on + strand, within ABIE40_RS01140 at 226.797 kb on - strand, within ABIE40_RS01140 at 227.150 kb on + strand, within ABIE40_RS01140 at 227.150 kb on + strand, within ABIE40_RS01140 at 227.156 kb on + strand, within ABIE40_RS01140 at 227.221 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 225,489 + -2.1 226,273 + ABIE40_RS01135 0.87 -1.2 226,321 + -0.4 226,389 + +0.8 226,389 + -0.7 226,390 - -0.2 226,468 - -0.8 226,468 - +0.8 226,565 - ABIE40_RS01140 0.17 +1.1 226,738 + ABIE40_RS01140 0.38 -1.4 226,738 + ABIE40_RS01140 0.38 -1.3 226,738 + ABIE40_RS01140 0.38 +1.8 226,738 + ABIE40_RS01140 0.38 +3.4 226,738 - ABIE40_RS01140 0.38 -0.5 226,739 - ABIE40_RS01140 0.39 -2.3 226,739 - ABIE40_RS01140 0.39 -0.5 226,739 - ABIE40_RS01140 0.39 +0.1 226,739 - ABIE40_RS01140 0.39 -0.4 226,739 - ABIE40_RS01140 0.39 -0.8 226,739 - ABIE40_RS01140 0.39 -1.7 226,739 - ABIE40_RS01140 0.39 -0.2 226,796 + ABIE40_RS01140 0.46 -1.4 226,797 - ABIE40_RS01140 0.46 +1.4 227,150 + ABIE40_RS01140 0.89 -0.5 227,150 + ABIE40_RS01140 0.89 -1.0 227,156 + ABIE40_RS01140 0.89 -0.5 227,221 + +0.7
Or see this region's nucleotide sequence