Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS29345 and ABID97_RS29350 are separated by 120 nucleotides ABID97_RS29350 and ABID97_RS29355 overlap by 4 nucleotides ABID97_RS29355 and ABID97_RS29360 are separated by 156 nucleotides
ABID97_RS29345: ABID97_RS29345 - IclR family transcriptional regulator, at 795,004 to 795,786
_RS29345
ABID97_RS29350: ABID97_RS29350 - nuclear transport factor 2 family protein, at 795,907 to 796,305
_RS29350
ABID97_RS29355: ABID97_RS29355 - bifunctional 3-(3-hydroxy-phenyl)propionate/3-hydroxycinnamic acid hydroxylase, at 796,302 to 797,918
_RS29355
ABID97_RS29360: ABID97_RS29360 - alcohol dehydrogenase catalytic domain-containing protein, at 798,075 to 799,184
_RS29360
Position (kb) 796
797
798 Strain fitness (log2 ratio) -1
0
1
2 at 795.608 kb on + strand, within ABID97_RS29345 at 795.609 kb on - strand, within ABID97_RS29345 at 795.609 kb on - strand, within ABID97_RS29345 at 795.609 kb on - strand, within ABID97_RS29345 at 795.819 kb on + strand at 796.145 kb on + strand, within ABID97_RS29350 at 796.146 kb on - strand, within ABID97_RS29350 at 796.411 kb on + strand at 796.412 kb on - strand at 797.279 kb on - strand, within ABID97_RS29355 at 797.428 kb on + strand, within ABID97_RS29355 at 797.429 kb on - strand, within ABID97_RS29355 at 797.678 kb on - strand, within ABID97_RS29355 at 798.349 kb on - strand, within ABID97_RS29360 at 798.349 kb on - strand, within ABID97_RS29360 at 798.421 kb on - strand at 798.436 kb on - strand, within ABID97_RS29360 at 798.478 kb on - strand, within ABID97_RS29360 at 798.591 kb on + strand, within ABID97_RS29360 at 798.592 kb on - strand, within ABID97_RS29360
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 795,608 + ABID97_RS29345 0.77 -0.1 795,609 - ABID97_RS29345 0.77 -0.3 795,609 - ABID97_RS29345 0.77 +0.1 795,609 - ABID97_RS29345 0.77 -0.0 795,819 + -0.7 796,145 + ABID97_RS29350 0.60 +0.9 796,146 - ABID97_RS29350 0.60 +0.9 796,411 + -0.5 796,412 - -1.2 797,279 - ABID97_RS29355 0.60 -0.1 797,428 + ABID97_RS29355 0.70 +0.3 797,429 - ABID97_RS29355 0.70 +2.2 797,678 - ABID97_RS29355 0.85 -0.2 798,349 - ABID97_RS29360 0.25 +0.1 798,349 - ABID97_RS29360 0.25 -0.7 798,421 - +1.9 798,436 - ABID97_RS29360 0.33 -0.3 798,478 - ABID97_RS29360 0.36 +0.3 798,591 + ABID97_RS29360 0.46 -0.8 798,592 - ABID97_RS29360 0.47 -0.0
Or see this region's nucleotide sequence