Strain Fitness in Variovorax sp. OAS795 around ABID97_RS25695

Experiment: L-Glutamic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS25690 and ABID97_RS25695 are separated by 22 nucleotidesABID97_RS25695 and ABID97_RS25700 are separated by 112 nucleotides ABID97_RS25690: ABID97_RS25690 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 57,089 to 58,051 _RS25690 ABID97_RS25695: ABID97_RS25695 - cupin domain-containing protein, at 58,074 to 59,054 _RS25695 ABID97_RS25700: ABID97_RS25700 - LysR substrate-binding domain-containing protein, at 59,167 to 60,084 _RS25700 Position (kb) 58 59 60Strain fitness (log2 ratio) -1 0 1 2 3at 57.464 kb on - strand, within ABID97_RS25690at 57.783 kb on - strand, within ABID97_RS25690at 58.082 kb on - strandat 58.254 kb on + strand, within ABID97_RS25695at 58.393 kb on - strand, within ABID97_RS25695at 58.585 kb on - strand, within ABID97_RS25695at 59.122 kb on + strandat 59.381 kb on - strand, within ABID97_RS25700at 59.587 kb on + strand, within ABID97_RS25700at 59.588 kb on - strand, within ABID97_RS25700at 59.817 kb on - strand, within ABID97_RS25700at 60.020 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
remove
57,464 - ABID97_RS25690 0.39 -1.0
57,783 - ABID97_RS25690 0.72 -0.8
58,082 - -0.4
58,254 + ABID97_RS25695 0.18 -0.0
58,393 - ABID97_RS25695 0.33 -0.9
58,585 - ABID97_RS25695 0.52 -0.4
59,122 + -0.1
59,381 - ABID97_RS25700 0.23 +3.5
59,587 + ABID97_RS25700 0.46 -0.8
59,588 - ABID97_RS25700 0.46 -1.0
59,817 - ABID97_RS25700 0.71 -0.4
60,020 + -0.8

Or see this region's nucleotide sequence