Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS22830 and ABID97_RS22835 overlap by 1 nucleotides ABID97_RS22835 and ABID97_RS22840 are separated by 30 nucleotides ABID97_RS22840 and ABID97_RS22845 overlap by 4 nucleotides ABID97_RS22845 and ABID97_RS22850 are separated by 27 nucleotides
ABID97_RS22830: ABID97_RS22830 - phenylacetic acid degradation bifunctional protein PaaZ, at 4,726,943 to 4,728,997
_RS22830
ABID97_RS22835: ABID97_RS22835 - glucose 1-dehydrogenase, at 4,728,997 to 4,729,755
_RS22835
ABID97_RS22840: ABID97_RS22840 - isoprenylcysteine carboxylmethyltransferase family protein, at 4,729,786 to 4,730,346
_RS22840
ABID97_RS22845: ABID97_RS22845 - CPBP family intramembrane glutamic endopeptidase, at 4,730,343 to 4,731,137
_RS22845
ABID97_RS22850: ABID97_RS22850 - flavin reductase family protein, at 4,731,165 to 4,731,767
_RS22850
Position (kb) 4729
4730
4731 Strain fitness (log2 ratio) -1
0
1
2 at 4728.953 kb on + strand at 4728.954 kb on - strand at 4728.954 kb on - strand at 4728.954 kb on - strand at 4728.954 kb on - strand at 4728.986 kb on - strand at 4729.336 kb on - strand, within ABID97_RS22835 at 4729.460 kb on - strand, within ABID97_RS22835 at 4729.460 kb on - strand, within ABID97_RS22835 at 4729.607 kb on - strand, within ABID97_RS22835 at 4729.702 kb on + strand at 4729.841 kb on - strand at 4729.841 kb on - strand at 4729.886 kb on - strand, within ABID97_RS22840 at 4730.083 kb on + strand, within ABID97_RS22840 at 4730.149 kb on + strand, within ABID97_RS22840 at 4730.149 kb on + strand, within ABID97_RS22840 at 4730.149 kb on + strand, within ABID97_RS22840 at 4730.149 kb on + strand, within ABID97_RS22840 at 4730.150 kb on - strand, within ABID97_RS22840 at 4730.305 kb on + strand at 4730.530 kb on - strand, within ABID97_RS22845 at 4730.544 kb on + strand, within ABID97_RS22845 at 4730.820 kb on + strand, within ABID97_RS22845 at 4730.883 kb on + strand, within ABID97_RS22845 at 4730.884 kb on - strand, within ABID97_RS22845 at 4730.884 kb on - strand, within ABID97_RS22845
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 4,728,953 + -0.5 4,728,954 - +0.0 4,728,954 - +0.1 4,728,954 - -0.3 4,728,954 - +0.1 4,728,986 - -0.4 4,729,336 - ABID97_RS22835 0.45 -0.5 4,729,460 - ABID97_RS22835 0.61 +0.1 4,729,460 - ABID97_RS22835 0.61 -0.0 4,729,607 - ABID97_RS22835 0.80 +2.0 4,729,702 + +0.1 4,729,841 - +0.1 4,729,841 - +0.9 4,729,886 - ABID97_RS22840 0.18 +0.5 4,730,083 + ABID97_RS22840 0.53 -0.3 4,730,149 + ABID97_RS22840 0.65 +0.6 4,730,149 + ABID97_RS22840 0.65 +0.1 4,730,149 + ABID97_RS22840 0.65 +0.5 4,730,149 + ABID97_RS22840 0.65 +0.3 4,730,150 - ABID97_RS22840 0.65 +0.4 4,730,305 + +0.0 4,730,530 - ABID97_RS22845 0.24 +0.1 4,730,544 + ABID97_RS22845 0.25 +0.1 4,730,820 + ABID97_RS22845 0.60 -0.4 4,730,883 + ABID97_RS22845 0.68 +0.5 4,730,884 - ABID97_RS22845 0.68 +0.5 4,730,884 - ABID97_RS22845 0.68 +0.9
Or see this region's nucleotide sequence