Strain Fitness in Variovorax sp. OAS795 around ABID97_RS21735

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS21730 and ABID97_RS21735 are separated by 35 nucleotidesABID97_RS21735 and ABID97_RS21740 are separated by 27 nucleotidesABID97_RS21740 and ABID97_RS21745 overlap by 8 nucleotides ABID97_RS21730: ABID97_RS21730 - LysR substrate-binding domain-containing protein, at 4,492,245 to 4,493,144 _RS21730 ABID97_RS21735: ABID97_RS21735 - MetQ/NlpA family ABC transporter substrate-binding protein, at 4,493,180 to 4,494,001 _RS21735 ABID97_RS21740: ABID97_RS21740 - methionine ABC transporter permease, at 4,494,029 to 4,494,691 _RS21740 ABID97_RS21745: ABID97_RS21745 - ATP-binding cassette domain-containing protein, at 4,494,684 to 4,495,559 _RS21745 Position (kb) 4493 4494 4495Strain fitness (log2 ratio) -2 -1 0 1at 4492.767 kb on + strand, within ABID97_RS21730at 4492.971 kb on + strand, within ABID97_RS21730at 4492.971 kb on + strand, within ABID97_RS21730at 4492.971 kb on + strand, within ABID97_RS21730at 4492.971 kb on + strand, within ABID97_RS21730at 4492.972 kb on - strand, within ABID97_RS21730at 4492.972 kb on - strand, within ABID97_RS21730at 4492.972 kb on - strand, within ABID97_RS21730at 4492.987 kb on - strand, within ABID97_RS21730at 4493.068 kb on - strandat 4493.181 kb on + strandat 4493.181 kb on + strandat 4493.181 kb on + strandat 4493.182 kb on - strandat 4493.322 kb on + strand, within ABID97_RS21735at 4493.646 kb on + strand, within ABID97_RS21735at 4493.647 kb on - strand, within ABID97_RS21735at 4493.790 kb on + strand, within ABID97_RS21735at 4493.790 kb on + strand, within ABID97_RS21735at 4494.142 kb on - strand, within ABID97_RS21740at 4494.142 kb on - strand, within ABID97_RS21740at 4494.204 kb on + strand, within ABID97_RS21740at 4494.205 kb on - strand, within ABID97_RS21740at 4494.375 kb on + strand, within ABID97_RS21740at 4494.375 kb on + strand, within ABID97_RS21740at 4494.376 kb on - strand, within ABID97_RS21740at 4494.691 kb on + strandat 4494.691 kb on + strandat 4494.692 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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4,492,767 + ABID97_RS21730 0.58 -0.3
4,492,971 + ABID97_RS21730 0.81 -1.6
4,492,971 + ABID97_RS21730 0.81 +0.2
4,492,971 + ABID97_RS21730 0.81 +0.8
4,492,971 + ABID97_RS21730 0.81 +0.1
4,492,972 - ABID97_RS21730 0.81 -0.2
4,492,972 - ABID97_RS21730 0.81 +0.2
4,492,972 - ABID97_RS21730 0.81 +0.5
4,492,987 - ABID97_RS21730 0.82 -0.4
4,493,068 - -0.1
4,493,181 + -0.5
4,493,181 + -0.1
4,493,181 + +0.1
4,493,182 - -0.0
4,493,322 + ABID97_RS21735 0.17 -0.3
4,493,646 + ABID97_RS21735 0.57 -0.4
4,493,647 - ABID97_RS21735 0.57 -1.0
4,493,790 + ABID97_RS21735 0.74 -0.5
4,493,790 + ABID97_RS21735 0.74 -0.1
4,494,142 - ABID97_RS21740 0.17 -0.4
4,494,142 - ABID97_RS21740 0.17 +1.2
4,494,204 + ABID97_RS21740 0.26 -0.2
4,494,205 - ABID97_RS21740 0.27 +0.2
4,494,375 + ABID97_RS21740 0.52 -0.3
4,494,375 + ABID97_RS21740 0.52 +0.4
4,494,376 - ABID97_RS21740 0.52 -2.1
4,494,691 + +0.0
4,494,691 + +0.1
4,494,692 - +0.5

Or see this region's nucleotide sequence