Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS20685 and ABID97_RS20690 are separated by 186 nucleotides ABID97_RS20690 and ABID97_RS20695 are separated by 25 nucleotides
ABID97_RS20685: ABID97_RS20685 - AraC family transcriptional regulator, at 4,271,361 to 4,272,260
_RS20685
ABID97_RS20690: ABID97_RS20690 - fumarylacetoacetate hydrolase family protein, at 4,272,447 to 4,273,238
_RS20690
ABID97_RS20695: ABID97_RS20695 - metalloprotease PmbA, at 4,273,264 to 4,274,634
_RS20695
Position (kb) 4272
4273
4274 Strain fitness (log2 ratio) -2
-1
0
1 at 4271.465 kb on - strand, within ABID97_RS20685 at 4271.465 kb on - strand, within ABID97_RS20685 at 4271.614 kb on + strand, within ABID97_RS20685 at 4271.614 kb on + strand, within ABID97_RS20685 at 4271.615 kb on - strand, within ABID97_RS20685 at 4271.615 kb on - strand, within ABID97_RS20685 at 4271.686 kb on + strand, within ABID97_RS20685 at 4271.687 kb on - strand, within ABID97_RS20685 at 4272.038 kb on - strand, within ABID97_RS20685 at 4272.176 kb on - strand at 4272.176 kb on - strand at 4272.265 kb on + strand at 4272.265 kb on + strand at 4272.350 kb on + strand at 4272.351 kb on - strand at 4272.622 kb on - strand, within ABID97_RS20690 at 4272.640 kb on - strand, within ABID97_RS20690 at 4272.777 kb on + strand, within ABID97_RS20690 at 4272.777 kb on + strand, within ABID97_RS20690 at 4272.777 kb on + strand, within ABID97_RS20690 at 4272.784 kb on - strand, within ABID97_RS20690 at 4272.858 kb on + strand, within ABID97_RS20690 at 4272.859 kb on - strand, within ABID97_RS20690 at 4272.859 kb on - strand, within ABID97_RS20690 at 4272.859 kb on - strand, within ABID97_RS20690 at 4273.003 kb on - strand, within ABID97_RS20690 at 4273.003 kb on - strand, within ABID97_RS20690 at 4273.140 kb on + strand, within ABID97_RS20690 at 4273.141 kb on - strand, within ABID97_RS20690 at 4273.326 kb on + strand at 4273.326 kb on + strand at 4273.327 kb on - strand at 4273.327 kb on - strand at 4273.329 kb on - strand at 4273.469 kb on + strand, within ABID97_RS20695 at 4273.469 kb on + strand, within ABID97_RS20695 at 4273.469 kb on + strand, within ABID97_RS20695 at 4273.634 kb on + strand, within ABID97_RS20695 at 4273.634 kb on + strand, within ABID97_RS20695 at 4273.635 kb on - strand, within ABID97_RS20695 at 4273.649 kb on + strand, within ABID97_RS20695 at 4273.649 kb on + strand, within ABID97_RS20695 at 4273.649 kb on + strand, within ABID97_RS20695 at 4273.955 kb on + strand, within ABID97_RS20695 at 4274.009 kb on + strand, within ABID97_RS20695 at 4274.010 kb on - strand, within ABID97_RS20695
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 4,271,465 - ABID97_RS20685 0.12 +0.5 4,271,465 - ABID97_RS20685 0.12 +0.0 4,271,614 + ABID97_RS20685 0.28 +0.4 4,271,614 + ABID97_RS20685 0.28 +0.4 4,271,615 - ABID97_RS20685 0.28 -0.5 4,271,615 - ABID97_RS20685 0.28 +0.0 4,271,686 + ABID97_RS20685 0.36 -1.1 4,271,687 - ABID97_RS20685 0.36 -0.3 4,272,038 - ABID97_RS20685 0.75 -0.0 4,272,176 - -0.2 4,272,176 - +0.2 4,272,265 + +1.5 4,272,265 + -0.1 4,272,350 + +0.4 4,272,351 - +0.3 4,272,622 - ABID97_RS20690 0.22 -2.1 4,272,640 - ABID97_RS20690 0.24 +0.2 4,272,777 + ABID97_RS20690 0.42 -0.5 4,272,777 + ABID97_RS20690 0.42 -0.6 4,272,777 + ABID97_RS20690 0.42 -0.3 4,272,784 - ABID97_RS20690 0.43 +0.2 4,272,858 + ABID97_RS20690 0.52 -0.4 4,272,859 - ABID97_RS20690 0.52 +1.4 4,272,859 - ABID97_RS20690 0.52 -0.7 4,272,859 - ABID97_RS20690 0.52 -0.4 4,273,003 - ABID97_RS20690 0.70 -0.1 4,273,003 - ABID97_RS20690 0.70 -0.3 4,273,140 + ABID97_RS20690 0.88 +0.7 4,273,141 - ABID97_RS20690 0.88 +0.1 4,273,326 + -0.2 4,273,326 + -0.3 4,273,327 - -0.2 4,273,327 - +0.1 4,273,329 - -0.6 4,273,469 + ABID97_RS20695 0.15 +0.7 4,273,469 + ABID97_RS20695 0.15 -0.6 4,273,469 + ABID97_RS20695 0.15 +0.4 4,273,634 + ABID97_RS20695 0.27 -0.4 4,273,634 + ABID97_RS20695 0.27 +0.4 4,273,635 - ABID97_RS20695 0.27 +0.0 4,273,649 + ABID97_RS20695 0.28 -0.1 4,273,649 + ABID97_RS20695 0.28 -0.1 4,273,649 + ABID97_RS20695 0.28 -0.2 4,273,955 + ABID97_RS20695 0.50 -0.0 4,274,009 + ABID97_RS20695 0.54 -0.6 4,274,010 - ABID97_RS20695 0.54 +0.2
Or see this region's nucleotide sequence