Strain Fitness in Variovorax sp. OAS795 around ABID97_RS15445

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS15435 and ABID97_RS15440 are separated by 2 nucleotidesABID97_RS15440 and ABID97_RS15445 are separated by 132 nucleotidesABID97_RS15445 and ABID97_RS15450 are separated by 205 nucleotides ABID97_RS15435: ABID97_RS15435 - class I fructose-bisphosphate aldolase, at 3,194,337 to 3,195,368 _RS15435 ABID97_RS15440: ABID97_RS15440 - peptide-methionine (S)-S-oxide reductase MsrA, at 3,195,371 to 3,196,075 _RS15440 ABID97_RS15445: ABID97_RS15445 - alpha/beta hydrolase, at 3,196,208 to 3,197,716 _RS15445 ABID97_RS15450: ABID97_RS15450 - transglutaminase family protein, at 3,197,922 to 3,198,833 _RS15450 Position (kb) 3196 3197 3198Strain fitness (log2 ratio) -1 0 1 2at 3195.334 kb on - strandat 3195.334 kb on - strandat 3195.414 kb on + strandat 3195.474 kb on + strand, within ABID97_RS15440at 3195.475 kb on - strand, within ABID97_RS15440at 3195.475 kb on - strand, within ABID97_RS15440at 3195.513 kb on + strand, within ABID97_RS15440at 3195.528 kb on + strand, within ABID97_RS15440at 3195.603 kb on + strand, within ABID97_RS15440at 3195.657 kb on + strand, within ABID97_RS15440at 3195.722 kb on + strand, within ABID97_RS15440at 3195.722 kb on + strand, within ABID97_RS15440at 3195.741 kb on + strand, within ABID97_RS15440at 3195.741 kb on + strand, within ABID97_RS15440at 3195.936 kb on + strand, within ABID97_RS15440at 3195.936 kb on + strand, within ABID97_RS15440at 3195.959 kb on + strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3195.960 kb on - strand, within ABID97_RS15440at 3196.902 kb on + strand, within ABID97_RS15445at 3196.903 kb on - strand, within ABID97_RS15445at 3196.903 kb on - strand, within ABID97_RS15445at 3196.903 kb on - strand, within ABID97_RS15445at 3196.953 kb on + strand, within ABID97_RS15445at 3196.954 kb on - strand, within ABID97_RS15445at 3197.004 kb on + strand, within ABID97_RS15445at 3197.058 kb on + strand, within ABID97_RS15445at 3197.085 kb on + strand, within ABID97_RS15445at 3197.146 kb on - strand, within ABID97_RS15445at 3197.262 kb on + strand, within ABID97_RS15445at 3197.262 kb on + strand, within ABID97_RS15445at 3197.352 kb on + strand, within ABID97_RS15445at 3197.364 kb on + strand, within ABID97_RS15445at 3197.364 kb on + strand, within ABID97_RS15445at 3197.364 kb on + strand, within ABID97_RS15445at 3197.364 kb on + strand, within ABID97_RS15445at 3197.364 kb on + strand, within ABID97_RS15445at 3197.364 kb on + strand, within ABID97_RS15445at 3197.365 kb on - strand, within ABID97_RS15445at 3197.365 kb on - strand, within ABID97_RS15445at 3197.365 kb on - strand, within ABID97_RS15445at 3197.365 kb on - strand, within ABID97_RS15445at 3198.202 kb on + strand, within ABID97_RS15450at 3198.266 kb on - strand, within ABID97_RS15450at 3198.340 kb on + strand, within ABID97_RS15450at 3198.341 kb on - strand, within ABID97_RS15450at 3198.478 kb on + strand, within ABID97_RS15450

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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3,195,334 - -1.2
3,195,334 - +0.3
3,195,414 + +0.0
3,195,474 + ABID97_RS15440 0.15 -0.0
3,195,475 - ABID97_RS15440 0.15 -0.5
3,195,475 - ABID97_RS15440 0.15 +0.5
3,195,513 + ABID97_RS15440 0.20 -0.1
3,195,528 + ABID97_RS15440 0.22 -0.1
3,195,603 + ABID97_RS15440 0.33 +0.1
3,195,657 + ABID97_RS15440 0.41 +1.1
3,195,722 + ABID97_RS15440 0.50 +0.1
3,195,722 + ABID97_RS15440 0.50 +0.8
3,195,741 + ABID97_RS15440 0.52 -0.8
3,195,741 + ABID97_RS15440 0.52 -0.0
3,195,936 + ABID97_RS15440 0.80 -1.1
3,195,936 + ABID97_RS15440 0.80 +0.0
3,195,959 + ABID97_RS15440 0.83 -0.0
3,195,960 - ABID97_RS15440 0.84 +0.3
3,195,960 - ABID97_RS15440 0.84 +0.0
3,195,960 - ABID97_RS15440 0.84 -1.4
3,195,960 - ABID97_RS15440 0.84 -0.8
3,195,960 - ABID97_RS15440 0.84 +0.5
3,195,960 - ABID97_RS15440 0.84 +0.0
3,195,960 - ABID97_RS15440 0.84 +0.1
3,196,902 + ABID97_RS15445 0.46 -0.0
3,196,903 - ABID97_RS15445 0.46 -0.5
3,196,903 - ABID97_RS15445 0.46 +0.5
3,196,903 - ABID97_RS15445 0.46 +0.9
3,196,953 + ABID97_RS15445 0.49 -0.3
3,196,954 - ABID97_RS15445 0.49 +1.1
3,197,004 + ABID97_RS15445 0.53 +0.2
3,197,058 + ABID97_RS15445 0.56 +0.3
3,197,085 + ABID97_RS15445 0.58 -0.8
3,197,146 - ABID97_RS15445 0.62 +0.3
3,197,262 + ABID97_RS15445 0.70 -0.2
3,197,262 + ABID97_RS15445 0.70 +1.2
3,197,352 + ABID97_RS15445 0.76 +0.4
3,197,364 + ABID97_RS15445 0.77 +0.8
3,197,364 + ABID97_RS15445 0.77 -1.1
3,197,364 + ABID97_RS15445 0.77 -0.3
3,197,364 + ABID97_RS15445 0.77 +1.4
3,197,364 + ABID97_RS15445 0.77 +0.1
3,197,364 + ABID97_RS15445 0.77 -0.2
3,197,365 - ABID97_RS15445 0.77 +0.3
3,197,365 - ABID97_RS15445 0.77 +0.8
3,197,365 - ABID97_RS15445 0.77 +1.4
3,197,365 - ABID97_RS15445 0.77 +0.2
3,198,202 + ABID97_RS15450 0.31 +0.9
3,198,266 - ABID97_RS15450 0.38 +0.5
3,198,340 + ABID97_RS15450 0.46 +1.8
3,198,341 - ABID97_RS15450 0.46 +0.0
3,198,478 + ABID97_RS15450 0.61 +0.1

Or see this region's nucleotide sequence