Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13080 and ABID97_RS13085 are separated by 18 nucleotides ABID97_RS13085 and ABID97_RS13090 overlap by 4 nucleotides
ABID97_RS13080: ABID97_RS13080 - serine hydrolase domain-containing protein, at 2,722,373 to 2,724,289
_RS13080
ABID97_RS13085: ABID97_RS13085 - mandelate racemase/muconate lactonizing enzyme family protein, at 2,724,308 to 2,725,396
_RS13085
ABID97_RS13090: ABID97_RS13090 - IS481 family transposase, at 2,725,393 to 2,726,343
_RS13090
Position (kb)
2724
2725
2726 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 2723.687 kb on + strand, within ABID97_RS13080 at 2723.688 kb on - strand, within ABID97_RS13080 at 2723.688 kb on - strand, within ABID97_RS13080 at 2723.837 kb on + strand, within ABID97_RS13080 at 2723.850 kb on - strand, within ABID97_RS13080 at 2723.882 kb on + strand, within ABID97_RS13080 at 2723.882 kb on + strand, within ABID97_RS13080 at 2723.883 kb on - strand, within ABID97_RS13080 at 2723.919 kb on - strand, within ABID97_RS13080 at 2724.095 kb on + strand, within ABID97_RS13080 at 2724.095 kb on + strand, within ABID97_RS13080 at 2724.096 kb on + strand, within ABID97_RS13080 at 2724.096 kb on - strand, within ABID97_RS13080 at 2724.097 kb on + strand, within ABID97_RS13080 at 2724.097 kb on + strand, within ABID97_RS13080 at 2724.453 kb on - strand, within ABID97_RS13085 at 2724.459 kb on - strand, within ABID97_RS13085 at 2724.716 kb on + strand, within ABID97_RS13085 at 2724.716 kb on + strand, within ABID97_RS13085 at 2725.289 kb on + strand at 2725.395 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,723,687 + ABID97_RS13080 0.69 +0.3 2,723,688 - ABID97_RS13080 0.69 -1.1 2,723,688 - ABID97_RS13080 0.69 +0.2 2,723,837 + ABID97_RS13080 0.76 -0.7 2,723,850 - ABID97_RS13080 0.77 -0.5 2,723,882 + ABID97_RS13080 0.79 -0.1 2,723,882 + ABID97_RS13080 0.79 +0.2 2,723,883 - ABID97_RS13080 0.79 -0.3 2,723,919 - ABID97_RS13080 0.81 +4.0 2,724,095 + ABID97_RS13080 0.90 -0.0 2,724,095 + ABID97_RS13080 0.90 +0.1 2,724,096 + ABID97_RS13080 0.90 +0.1 2,724,096 - ABID97_RS13080 0.90 -0.1 2,724,097 + ABID97_RS13080 0.90 -0.9 2,724,097 + ABID97_RS13080 0.90 -1.6 2,724,453 - ABID97_RS13085 0.13 +1.2 2,724,459 - ABID97_RS13085 0.14 -0.7 2,724,716 + ABID97_RS13085 0.37 -1.1 2,724,716 + ABID97_RS13085 0.37 -0.4 2,725,289 + +1.7 2,725,395 - +0.2
Or see this region's nucleotide sequence