Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13075

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13070 and ABID97_RS13075 are separated by 71 nucleotidesABID97_RS13075 and ABID97_RS13080 are separated by 246 nucleotides ABID97_RS13070: ABID97_RS13070 - hypothetical protein, at 2,718,837 to 2,720,906 _RS13070 ABID97_RS13075: ABID97_RS13075 - glycoside hydrolase family 5 protein, at 2,720,978 to 2,722,126 _RS13075 ABID97_RS13080: ABID97_RS13080 - serine hydrolase domain-containing protein, at 2,722,373 to 2,724,289 _RS13080 Position (kb) 2720 2721 2722 2723Strain fitness (log2 ratio) -1 0 1at 2720.071 kb on - strand, within ABID97_RS13070at 2720.142 kb on + strand, within ABID97_RS13070at 2720.143 kb on - strand, within ABID97_RS13070at 2720.235 kb on + strand, within ABID97_RS13070at 2720.235 kb on + strand, within ABID97_RS13070at 2720.451 kb on + strand, within ABID97_RS13070at 2720.871 kb on + strandat 2720.904 kb on + strandat 2721.659 kb on + strand, within ABID97_RS13075at 2721.660 kb on - strand, within ABID97_RS13075at 2721.801 kb on + strand, within ABID97_RS13075at 2721.834 kb on + strand, within ABID97_RS13075at 2721.835 kb on - strand, within ABID97_RS13075at 2721.923 kb on - strand, within ABID97_RS13075at 2722.243 kb on + strandat 2722.905 kb on - strand, within ABID97_RS13080at 2723.009 kb on + strand, within ABID97_RS13080

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,720,071 - ABID97_RS13070 0.60 +0.1
2,720,142 + ABID97_RS13070 0.63 +0.2
2,720,143 - ABID97_RS13070 0.63 -0.8
2,720,235 + ABID97_RS13070 0.68 -0.6
2,720,235 + ABID97_RS13070 0.68 -0.6
2,720,451 + ABID97_RS13070 0.78 -0.0
2,720,871 + -0.1
2,720,904 + +1.0
2,721,659 + ABID97_RS13075 0.59 +0.3
2,721,660 - ABID97_RS13075 0.59 +0.4
2,721,801 + ABID97_RS13075 0.72 +0.1
2,721,834 + ABID97_RS13075 0.74 +0.1
2,721,835 - ABID97_RS13075 0.75 +0.6
2,721,923 - ABID97_RS13075 0.82 +0.6
2,722,243 + -0.0
2,722,905 - ABID97_RS13080 0.28 +0.9
2,723,009 + ABID97_RS13080 0.33 +0.1

Or see this region's nucleotide sequence