Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12705

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12695 and ABID97_RS12700 are separated by 54 nucleotidesABID97_RS12700 and ABID97_RS12705 overlap by 4 nucleotidesABID97_RS12705 and ABID97_RS12710 overlap by 4 nucleotides ABID97_RS12695: ABID97_RS12695 - hypothetical protein, at 2,635,442 to 2,635,612 _RS12695 ABID97_RS12700: ABID97_RS12700 - response regulator transcription factor, at 2,635,667 to 2,636,314 _RS12700 ABID97_RS12705: ABID97_RS12705 - histidine kinase, at 2,636,311 to 2,637,690 _RS12705 ABID97_RS12710: ABID97_RS12710 - alpha/beta fold hydrolase, at 2,637,687 to 2,638,694 _RS12710 Position (kb) 2636 2637 2638Strain fitness (log2 ratio) -1 0 1at 2635.335 kb on + strandat 2635.335 kb on + strandat 2635.336 kb on - strandat 2635.612 kb on + strandat 2635.612 kb on + strandat 2635.613 kb on - strandat 2635.930 kb on - strand, within ABID97_RS12700at 2635.998 kb on + strand, within ABID97_RS12700at 2636.442 kb on - strandat 2636.606 kb on + strand, within ABID97_RS12705at 2636.607 kb on - strand, within ABID97_RS12705at 2636.792 kb on + strand, within ABID97_RS12705at 2636.792 kb on + strand, within ABID97_RS12705at 2637.401 kb on + strand, within ABID97_RS12705at 2637.422 kb on + strand, within ABID97_RS12705at 2637.422 kb on + strand, within ABID97_RS12705at 2637.727 kb on + strandat 2637.727 kb on + strandat 2637.727 kb on + strandat 2637.727 kb on + strandat 2637.727 kb on + strandat 2637.728 kb on - strandat 2637.728 kb on - strandat 2638.603 kb on - strandat 2638.603 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,635,335 + +0.3
2,635,335 + -0.1
2,635,336 - -0.9
2,635,612 + -0.3
2,635,612 + -0.0
2,635,613 - +1.1
2,635,930 - ABID97_RS12700 0.41 -0.7
2,635,998 + ABID97_RS12700 0.51 +0.4
2,636,442 - +0.6
2,636,606 + ABID97_RS12705 0.21 +0.9
2,636,607 - ABID97_RS12705 0.21 -0.4
2,636,792 + ABID97_RS12705 0.35 +1.1
2,636,792 + ABID97_RS12705 0.35 -0.1
2,637,401 + ABID97_RS12705 0.79 +1.7
2,637,422 + ABID97_RS12705 0.81 +0.3
2,637,422 + ABID97_RS12705 0.81 +0.4
2,637,727 + +0.7
2,637,727 + +0.2
2,637,727 + -0.0
2,637,727 + -0.2
2,637,727 + -0.5
2,637,728 - -0.7
2,637,728 - -0.9
2,638,603 - -0.1
2,638,603 - +0.0

Or see this region's nucleotide sequence