Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS12695 and ABID97_RS12700 are separated by 54 nucleotides ABID97_RS12700 and ABID97_RS12705 overlap by 4 nucleotides ABID97_RS12705 and ABID97_RS12710 overlap by 4 nucleotides
ABID97_RS12695: ABID97_RS12695 - hypothetical protein, at 2,635,442 to 2,635,612
_RS12695
ABID97_RS12700: ABID97_RS12700 - response regulator transcription factor, at 2,635,667 to 2,636,314
_RS12700
ABID97_RS12705: ABID97_RS12705 - histidine kinase, at 2,636,311 to 2,637,690
_RS12705
ABID97_RS12710: ABID97_RS12710 - alpha/beta fold hydrolase, at 2,637,687 to 2,638,694
_RS12710
Position (kb)
2636
2637
2638 Strain fitness (log2 ratio)
-1
0
1 at 2635.335 kb on + strand at 2635.335 kb on + strand at 2635.336 kb on - strand at 2635.612 kb on + strand at 2635.612 kb on + strand at 2635.613 kb on - strand at 2635.930 kb on - strand, within ABID97_RS12700 at 2635.998 kb on + strand, within ABID97_RS12700 at 2636.442 kb on - strand at 2636.606 kb on + strand, within ABID97_RS12705 at 2636.607 kb on - strand, within ABID97_RS12705 at 2636.792 kb on + strand, within ABID97_RS12705 at 2636.792 kb on + strand, within ABID97_RS12705 at 2637.401 kb on + strand, within ABID97_RS12705 at 2637.422 kb on + strand, within ABID97_RS12705 at 2637.422 kb on + strand, within ABID97_RS12705 at 2637.727 kb on + strand at 2637.727 kb on + strand at 2637.727 kb on + strand at 2637.727 kb on + strand at 2637.727 kb on + strand at 2637.728 kb on - strand at 2637.728 kb on - strand at 2638.603 kb on - strand at 2638.603 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,635,335 + +0.3 2,635,335 + -0.1 2,635,336 - -0.9 2,635,612 + -0.3 2,635,612 + -0.0 2,635,613 - +1.1 2,635,930 - ABID97_RS12700 0.41 -0.7 2,635,998 + ABID97_RS12700 0.51 +0.4 2,636,442 - +0.6 2,636,606 + ABID97_RS12705 0.21 +0.9 2,636,607 - ABID97_RS12705 0.21 -0.4 2,636,792 + ABID97_RS12705 0.35 +1.1 2,636,792 + ABID97_RS12705 0.35 -0.1 2,637,401 + ABID97_RS12705 0.79 +1.7 2,637,422 + ABID97_RS12705 0.81 +0.3 2,637,422 + ABID97_RS12705 0.81 +0.4 2,637,727 + +0.7 2,637,727 + +0.2 2,637,727 + -0.0 2,637,727 + -0.2 2,637,727 + -0.5 2,637,728 - -0.7 2,637,728 - -0.9 2,638,603 - -0.1 2,638,603 - +0.0
Or see this region's nucleotide sequence