Strain Fitness in Variovorax sp. OAS795 around ABID97_RS08810

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS08805 and ABID97_RS08810 overlap by 4 nucleotidesABID97_RS08810 and ABID97_RS08815 overlap by 4 nucleotidesABID97_RS08815 and ABID97_RS08820 overlap by 4 nucleotides ABID97_RS08800: ABID97_RS08800 - NAD/NADP octopine/nopaline dehydrogenase family protein, at 1,842,717 to 1,843,790 _RS08800 ABID97_RS08805: ABID97_RS08805 - 3-hydroxybutyryl-CoA dehydrogenase, at 1,843,780 to 1,844,784 _RS08805 ABID97_RS08810: ABID97_RS08810 - alpha/beta hydrolase, at 1,844,781 to 1,845,581 _RS08810 ABID97_RS08815: ABID97_RS08815 - zinc-binding dehydrogenase, at 1,845,578 to 1,846,456 _RS08815 ABID97_RS08820: ABID97_RS08820 - MarR family transcriptional regulator, at 1,846,453 to 1,846,929 _RS08820 Position (kb) 1844 1845 1846Strain fitness (log2 ratio) -1 0 1at 1844.257 kb on + strand, within ABID97_RS08805at 1844.258 kb on - strand, within ABID97_RS08805at 1844.258 kb on - strand, within ABID97_RS08805at 1844.258 kb on - strand, within ABID97_RS08805at 1844.381 kb on - strand, within ABID97_RS08805at 1844.668 kb on + strand, within ABID97_RS08805at 1844.668 kb on + strand, within ABID97_RS08805at 1844.668 kb on + strand, within ABID97_RS08805at 1844.669 kb on - strand, within ABID97_RS08805at 1844.669 kb on - strand, within ABID97_RS08805at 1844.674 kb on + strand, within ABID97_RS08805at 1844.675 kb on - strand, within ABID97_RS08805at 1844.721 kb on + strandat 1845.156 kb on + strand, within ABID97_RS08810at 1846.454 kb on + strandat 1846.455 kb on - strandat 1846.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,844,257 + ABID97_RS08805 0.47 +0.3
1,844,258 - ABID97_RS08805 0.48 -0.1
1,844,258 - ABID97_RS08805 0.48 +0.4
1,844,258 - ABID97_RS08805 0.48 +1.2
1,844,381 - ABID97_RS08805 0.60 -0.5
1,844,668 + ABID97_RS08805 0.88 -1.1
1,844,668 + ABID97_RS08805 0.88 +0.6
1,844,668 + ABID97_RS08805 0.88 +1.0
1,844,669 - ABID97_RS08805 0.88 -1.2
1,844,669 - ABID97_RS08805 0.88 +0.1
1,844,674 + ABID97_RS08805 0.89 +0.2
1,844,675 - ABID97_RS08805 0.89 +0.5
1,844,721 + -0.0
1,845,156 + ABID97_RS08810 0.47 +0.4
1,846,454 + -0.0
1,846,455 - +0.1
1,846,455 - -0.3

Or see this region's nucleotide sequence