Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS05075 and ABID97_RS05080 overlap by 4 nucleotides ABID97_RS05080 and ABID97_RS05085 are separated by 44 nucleotides ABID97_RS05085 and ABID97_RS05090 are separated by 79 nucleotides ABID97_RS05090 and ABID97_RS05095 are separated by 24 nucleotides
ABID97_RS05075: ABID97_RS05075 - DUF2169 domain-containing protein, at 1,072,084 to 1,074,678
_RS05075
ABID97_RS05080: ABID97_RS05080 - pentapeptide repeat-containing protein, at 1,074,675 to 1,075,727
_RS05080
ABID97_RS05085: ABID97_RS05085 - hypothetical protein, at 1,075,772 to 1,075,954
_RS05085
ABID97_RS05090: ABID97_RS05090 - DUF3540 domain-containing protein, at 1,076,034 to 1,076,417
_RS05090
ABID97_RS05095: ABID97_RS05095 - DUF4150 domain-containing protein, at 1,076,442 to 1,076,837
_RS05095
Position (kb) 1074
1075
1076 Strain fitness (log2 ratio) -1
0
1 at 1074.094 kb on + strand, within ABID97_RS05075 at 1075.132 kb on - strand, within ABID97_RS05080 at 1075.132 kb on - strand, within ABID97_RS05080 at 1076.537 kb on + strand, within ABID97_RS05095 at 1076.537 kb on + strand, within ABID97_RS05095
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,074,094 + ABID97_RS05075 0.77 +0.4 1,075,132 - ABID97_RS05080 0.43 -0.6 1,075,132 - ABID97_RS05080 0.43 +0.4 1,076,537 + ABID97_RS05095 0.24 +0.7 1,076,537 + ABID97_RS05095 0.24 +0.3
Or see this region's nucleotide sequence