Strain Fitness in Variovorax sp. OAS795 around ABID97_RS02030

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS02020 and ABID97_RS02025 are separated by 23 nucleotidesABID97_RS02025 and ABID97_RS02030 are separated by 89 nucleotidesABID97_RS02030 and ABID97_RS02035 are separated by 78 nucleotides ABID97_RS02020: ABID97_RS02020 - septal ring lytic transglycosylase RlpA family protein, at 406,134 to 407,168 _RS02020 ABID97_RS02025: ABID97_RS02025 - carboxymuconolactone decarboxylase family protein, at 407,192 to 407,659 _RS02025 ABID97_RS02030: ABID97_RS02030 - RNA polymerase sigma-70 factor, at 407,749 to 408,630 _RS02030 ABID97_RS02035: ABID97_RS02035 - ferritin-like domain-containing protein, at 408,709 to 409,566 _RS02035 Position (kb) 407 408 409Strain fitness (log2 ratio) -2 -1 0 1at 407.499 kb on + strand, within ABID97_RS02025at 407.499 kb on + strand, within ABID97_RS02025at 407.625 kb on + strandat 407.625 kb on + strandat 407.626 kb on - strandat 407.626 kb on - strandat 407.626 kb on - strandat 407.666 kb on + strandat 407.666 kb on + strandat 407.666 kb on + strandat 407.667 kb on - strandat 407.667 kb on - strandat 407.667 kb on - strandat 407.700 kb on + strandat 407.700 kb on + strandat 407.700 kb on + strandat 407.700 kb on + strandat 407.700 kb on + strandat 407.701 kb on - strandat 407.701 kb on - strandat 407.701 kb on - strandat 407.701 kb on - strandat 407.750 kb on + strandat 407.751 kb on - strandat 407.751 kb on - strandat 407.751 kb on - strandat 407.954 kb on + strand, within ABID97_RS02030at 407.954 kb on + strand, within ABID97_RS02030at 407.954 kb on + strand, within ABID97_RS02030at 407.955 kb on - strand, within ABID97_RS02030at 407.955 kb on - strand, within ABID97_RS02030at 407.955 kb on - strand, within ABID97_RS02030at 408.233 kb on + strand, within ABID97_RS02030at 408.233 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.401 kb on + strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.402 kb on - strand, within ABID97_RS02030at 408.691 kb on - strandat 408.722 kb on + strandat 408.723 kb on - strandat 408.723 kb on - strandat 409.073 kb on + strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.074 kb on - strand, within ABID97_RS02035at 409.082 kb on + strand, within ABID97_RS02035at 409.082 kb on + strand, within ABID97_RS02035at 409.083 kb on - strand, within ABID97_RS02035at 409.083 kb on - strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.124 kb on + strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.125 kb on - strand, within ABID97_RS02035at 409.308 kb on - strand, within ABID97_RS02035at 409.578 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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407,499 + ABID97_RS02025 0.66 +0.5
407,499 + ABID97_RS02025 0.66 +0.4
407,625 + +0.8
407,625 + -0.1
407,626 - -0.1
407,626 - -0.2
407,626 - +0.7
407,666 + -1.2
407,666 + -0.3
407,666 + -0.2
407,667 - -0.1
407,667 - -0.0
407,667 - -0.3
407,700 + +0.1
407,700 + +0.2
407,700 + +0.0
407,700 + -0.0
407,700 + -0.3
407,701 - -0.0
407,701 - -0.2
407,701 - +0.1
407,701 - -0.2
407,750 + -0.7
407,751 - +0.1
407,751 - +0.7
407,751 - -0.0
407,954 + ABID97_RS02030 0.23 -0.2
407,954 + ABID97_RS02030 0.23 +0.6
407,954 + ABID97_RS02030 0.23 -0.6
407,955 - ABID97_RS02030 0.23 -0.7
407,955 - ABID97_RS02030 0.23 -0.5
407,955 - ABID97_RS02030 0.23 -1.2
408,233 + ABID97_RS02030 0.55 +0.7
408,233 + ABID97_RS02030 0.55 -0.0
408,401 + ABID97_RS02030 0.74 -1.2
408,401 + ABID97_RS02030 0.74 -0.5
408,401 + ABID97_RS02030 0.74 -0.4
408,401 + ABID97_RS02030 0.74 +0.0
408,401 + ABID97_RS02030 0.74 -0.4
408,401 + ABID97_RS02030 0.74 -0.6
408,401 + ABID97_RS02030 0.74 -0.5
408,402 - ABID97_RS02030 0.74 -0.3
408,402 - ABID97_RS02030 0.74 -0.5
408,402 - ABID97_RS02030 0.74 -0.1
408,402 - ABID97_RS02030 0.74 +0.1
408,402 - ABID97_RS02030 0.74 -0.6
408,402 - ABID97_RS02030 0.74 -0.1
408,402 - ABID97_RS02030 0.74 -0.2
408,402 - ABID97_RS02030 0.74 -2.4
408,691 - +0.3
408,722 + +0.0
408,723 - -0.1
408,723 - +0.3
409,073 + ABID97_RS02035 0.42 +0.1
409,074 - ABID97_RS02035 0.43 +0.4
409,074 - ABID97_RS02035 0.43 +0.8
409,074 - ABID97_RS02035 0.43 -0.7
409,074 - ABID97_RS02035 0.43 +0.2
409,074 - ABID97_RS02035 0.43 -1.1
409,082 + ABID97_RS02035 0.43 +0.0
409,082 + ABID97_RS02035 0.43 +0.9
409,083 - ABID97_RS02035 0.44 -0.1
409,083 - ABID97_RS02035 0.44 -0.5
409,124 + ABID97_RS02035 0.48 +0.2
409,124 + ABID97_RS02035 0.48 -0.2
409,124 + ABID97_RS02035 0.48 +0.8
409,124 + ABID97_RS02035 0.48 -0.0
409,124 + ABID97_RS02035 0.48 +0.5
409,125 - ABID97_RS02035 0.48 +0.8
409,125 - ABID97_RS02035 0.48 -0.1
409,125 - ABID97_RS02035 0.48 -0.0
409,125 - ABID97_RS02035 0.48 -1.3
409,125 - ABID97_RS02035 0.48 +0.1
409,125 - ABID97_RS02035 0.48 -0.3
409,125 - ABID97_RS02035 0.48 -0.0
409,125 - ABID97_RS02035 0.48 -0.3
409,308 - ABID97_RS02035 0.70 +0.0
409,578 + +0.3

Or see this region's nucleotide sequence