Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS00540 and ABID97_RS00545 overlap by 4 nucleotides ABID97_RS00545 and ABID97_RS00550 are separated by 109 nucleotides ABID97_RS00550 and ABID97_RS00555 are separated by 112 nucleotides ABID97_RS00555 and ABID97_RS00560 are separated by 43 nucleotides
ABID97_RS00540: ABID97_RS00540 - HAMP domain-containing sensor histidine kinase, at 116,446 to 117,840
_RS00540
ABID97_RS00545: ABID97_RS00545 - response regulator transcription factor, at 117,837 to 118,538
_RS00545
ABID97_RS00550: ABID97_RS00550 - DUF4260 domain-containing protein, at 118,648 to 119,028
_RS00550
ABID97_RS00555: ABID97_RS00555 - Spy/CpxP family protein refolding chaperone, at 119,141 to 119,608
_RS00555
ABID97_RS00560: ABID97_RS00560 - DUF4148 domain-containing protein, at 119,652 to 120,023
_RS00560
Position (kb) 118
119
120 Strain fitness (log2 ratio) -1
0
1 at 117.871 kb on + strand at 117.958 kb on + strand, within ABID97_RS00545 at 117.958 kb on + strand, within ABID97_RS00545 at 117.958 kb on + strand, within ABID97_RS00545 at 117.959 kb on - strand, within ABID97_RS00545 at 117.959 kb on - strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.246 kb on + strand, within ABID97_RS00545 at 118.247 kb on - strand, within ABID97_RS00545 at 118.247 kb on - strand, within ABID97_RS00545 at 118.247 kb on - strand, within ABID97_RS00545 at 118.247 kb on - strand, within ABID97_RS00545 at 118.247 kb on - strand, within ABID97_RS00545 at 118.480 kb on + strand at 118.480 kb on + strand at 118.480 kb on + strand at 118.480 kb on + strand at 118.481 kb on - strand at 118.481 kb on - strand at 118.481 kb on - strand at 118.481 kb on - strand at 118.706 kb on + strand, within ABID97_RS00550 at 118.706 kb on + strand, within ABID97_RS00550 at 118.707 kb on - strand, within ABID97_RS00550 at 118.829 kb on + strand, within ABID97_RS00550 at 118.847 kb on + strand, within ABID97_RS00550 at 118.847 kb on + strand, within ABID97_RS00550 at 118.847 kb on + strand, within ABID97_RS00550 at 118.848 kb on - strand, within ABID97_RS00550 at 118.880 kb on + strand, within ABID97_RS00550 at 118.880 kb on + strand, within ABID97_RS00550 at 118.925 kb on - strand, within ABID97_RS00550 at 119.075 kb on + strand at 119.653 kb on + strand at 119.653 kb on + strand at 119.653 kb on + strand at 119.654 kb on - strand at 119.789 kb on - strand, within ABID97_RS00560 at 119.789 kb on - strand, within ABID97_RS00560 at 119.941 kb on + strand, within ABID97_RS00560 at 119.941 kb on + strand, within ABID97_RS00560
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 117,871 + +0.2 117,958 + ABID97_RS00545 0.17 +0.1 117,958 + ABID97_RS00545 0.17 +0.6 117,958 + ABID97_RS00545 0.17 -0.2 117,959 - ABID97_RS00545 0.17 +0.3 117,959 - ABID97_RS00545 0.17 -0.2 118,246 + ABID97_RS00545 0.58 -0.5 118,246 + ABID97_RS00545 0.58 -0.2 118,246 + ABID97_RS00545 0.58 +0.8 118,246 + ABID97_RS00545 0.58 -0.4 118,246 + ABID97_RS00545 0.58 -0.1 118,246 + ABID97_RS00545 0.58 -0.5 118,247 - ABID97_RS00545 0.58 +0.4 118,247 - ABID97_RS00545 0.58 +0.3 118,247 - ABID97_RS00545 0.58 +0.1 118,247 - ABID97_RS00545 0.58 +0.8 118,247 - ABID97_RS00545 0.58 -0.0 118,480 + +0.4 118,480 + -0.4 118,480 + -0.4 118,480 + -0.4 118,481 - -0.9 118,481 - -0.1 118,481 - +0.1 118,481 - +0.3 118,706 + ABID97_RS00550 0.15 -0.6 118,706 + ABID97_RS00550 0.15 -0.5 118,707 - ABID97_RS00550 0.15 +0.0 118,829 + ABID97_RS00550 0.48 -0.2 118,847 + ABID97_RS00550 0.52 -0.4 118,847 + ABID97_RS00550 0.52 -0.3 118,847 + ABID97_RS00550 0.52 -0.1 118,848 - ABID97_RS00550 0.52 -0.1 118,880 + ABID97_RS00550 0.61 -0.4 118,880 + ABID97_RS00550 0.61 -0.6 118,925 - ABID97_RS00550 0.73 +0.1 119,075 + -1.2 119,653 + -0.1 119,653 + +0.4 119,653 + -0.1 119,654 - -0.5 119,789 - ABID97_RS00560 0.37 +0.3 119,789 - ABID97_RS00560 0.37 -0.5 119,941 + ABID97_RS00560 0.78 +0.2 119,941 + ABID97_RS00560 0.78 +1.1
Or see this region's nucleotide sequence