Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00525

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS00515 and ABID97_RS00520 overlap by 4 nucleotidesABID97_RS00520 and ABID97_RS00525 are separated by 10 nucleotidesABID97_RS00525 and ABID97_RS00530 are separated by 77 nucleotidesABID97_RS00530 and ABID97_RS00535 are separated by 7 nucleotides ABID97_RS00515: ABID97_RS00515 - SLC13 family permease, at 112,152 to 113,282 _RS00515 ABID97_RS00520: ABID97_RS00520 - AraC family transcriptional regulator, at 113,279 to 114,031 _RS00520 ABID97_RS00525: ABID97_RS00525 - DMT family transporter, at 114,042 to 114,887 _RS00525 ABID97_RS00530: ABID97_RS00530 - hypothetical protein, at 114,965 to 115,288 _RS00530 ABID97_RS00535: ABID97_RS00535 - NADP-dependent oxidoreductase, at 115,296 to 116,339 _RS00535 Position (kb) 114 115Strain fitness (log2 ratio) -2 -1 0 1at 113.315 kb on + strandat 113.576 kb on + strand, within ABID97_RS00520at 113.576 kb on + strand, within ABID97_RS00520at 113.576 kb on + strand, within ABID97_RS00520at 113.577 kb on - strand, within ABID97_RS00520at 113.577 kb on - strand, within ABID97_RS00520at 114.029 kb on + strandat 114.240 kb on + strand, within ABID97_RS00525at 114.240 kb on + strand, within ABID97_RS00525at 114.240 kb on + strand, within ABID97_RS00525at 114.240 kb on + strand, within ABID97_RS00525at 114.240 kb on + strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.241 kb on - strand, within ABID97_RS00525at 114.318 kb on + strand, within ABID97_RS00525at 114.319 kb on - strand, within ABID97_RS00525at 114.319 kb on - strand, within ABID97_RS00525at 114.319 kb on - strand, within ABID97_RS00525at 114.319 kb on - strand, within ABID97_RS00525at 114.526 kb on - strand, within ABID97_RS00525at 114.762 kb on + strand, within ABID97_RS00525at 114.762 kb on + strand, within ABID97_RS00525at 114.762 kb on + strand, within ABID97_RS00525at 114.763 kb on - strand, within ABID97_RS00525at 114.892 kb on + strandat 114.892 kb on + strandat 114.892 kb on + strandat 114.892 kb on + strandat 114.892 kb on + strandat 114.892 kb on + strandat 114.893 kb on - strandat 114.893 kb on - strandat 114.893 kb on - strandat 114.932 kb on - strandat 115.037 kb on + strand, within ABID97_RS00530at 115.037 kb on + strand, within ABID97_RS00530at 115.038 kb on - strand, within ABID97_RS00530at 115.082 kb on + strand, within ABID97_RS00530at 115.082 kb on + strand, within ABID97_RS00530at 115.379 kb on + strandat 115.379 kb on + strandat 115.522 kb on + strand, within ABID97_RS00535at 115.522 kb on + strand, within ABID97_RS00535at 115.522 kb on + strand, within ABID97_RS00535at 115.564 kb on + strand, within ABID97_RS00535at 115.565 kb on - strand, within ABID97_RS00535at 115.565 kb on - strand, within ABID97_RS00535at 115.657 kb on + strand, within ABID97_RS00535at 115.657 kb on + strand, within ABID97_RS00535at 115.657 kb on + strand, within ABID97_RS00535at 115.657 kb on + strand, within ABID97_RS00535at 115.723 kb on + strand, within ABID97_RS00535at 115.723 kb on + strand, within ABID97_RS00535at 115.723 kb on + strand, within ABID97_RS00535at 115.724 kb on - strand, within ABID97_RS00535at 115.724 kb on - strand, within ABID97_RS00535

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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113,315 + -1.0
113,576 + ABID97_RS00520 0.39 -0.5
113,576 + ABID97_RS00520 0.39 -0.2
113,576 + ABID97_RS00520 0.39 -0.3
113,577 - ABID97_RS00520 0.40 -0.0
113,577 - ABID97_RS00520 0.40 +0.7
114,029 + -0.7
114,240 + ABID97_RS00525 0.23 -0.8
114,240 + ABID97_RS00525 0.23 -0.4
114,240 + ABID97_RS00525 0.23 -0.1
114,240 + ABID97_RS00525 0.23 -0.3
114,240 + ABID97_RS00525 0.23 +0.8
114,241 - ABID97_RS00525 0.24 -0.1
114,241 - ABID97_RS00525 0.24 -2.1
114,241 - ABID97_RS00525 0.24 -0.3
114,241 - ABID97_RS00525 0.24 +0.3
114,241 - ABID97_RS00525 0.24 +0.1
114,241 - ABID97_RS00525 0.24 -0.9
114,241 - ABID97_RS00525 0.24 +0.5
114,241 - ABID97_RS00525 0.24 -0.1
114,318 + ABID97_RS00525 0.33 -0.5
114,319 - ABID97_RS00525 0.33 -0.1
114,319 - ABID97_RS00525 0.33 -0.3
114,319 - ABID97_RS00525 0.33 -0.7
114,319 - ABID97_RS00525 0.33 +0.3
114,526 - ABID97_RS00525 0.57 -0.1
114,762 + ABID97_RS00525 0.85 +0.1
114,762 + ABID97_RS00525 0.85 -0.3
114,762 + ABID97_RS00525 0.85 -2.2
114,763 - ABID97_RS00525 0.85 -0.3
114,892 + -0.5
114,892 + -0.6
114,892 + -0.2
114,892 + -0.8
114,892 + -0.0
114,892 + -0.4
114,893 - +0.0
114,893 - -0.3
114,893 - +0.5
114,932 - -0.4
115,037 + ABID97_RS00530 0.22 -0.5
115,037 + ABID97_RS00530 0.22 -0.5
115,038 - ABID97_RS00530 0.23 -0.1
115,082 + ABID97_RS00530 0.36 -0.2
115,082 + ABID97_RS00530 0.36 -0.9
115,379 + -0.5
115,379 + +0.6
115,522 + ABID97_RS00535 0.22 -0.2
115,522 + ABID97_RS00535 0.22 -0.5
115,522 + ABID97_RS00535 0.22 -0.4
115,564 + ABID97_RS00535 0.26 -0.5
115,565 - ABID97_RS00535 0.26 -0.1
115,565 - ABID97_RS00535 0.26 +0.3
115,657 + ABID97_RS00535 0.35 -0.2
115,657 + ABID97_RS00535 0.35 +0.4
115,657 + ABID97_RS00535 0.35 -1.2
115,657 + ABID97_RS00535 0.35 -0.0
115,723 + ABID97_RS00535 0.41 -0.3
115,723 + ABID97_RS00535 0.41 +0.3
115,723 + ABID97_RS00535 0.41 -0.6
115,724 - ABID97_RS00535 0.41 -0.5
115,724 - ABID97_RS00535 0.41 +0.0

Or see this region's nucleotide sequence