Strain Fitness in Variovorax sp. OAS795 around ABID97_RS00335

Experiment: L-Glutamic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABID97_RS00330 and ABID97_RS00335 are separated by 115 nucleotidesABID97_RS00335 and ABID97_RS00340 are separated by 70 nucleotidesABID97_RS00340 and ABID97_RS00345 are separated by 5 nucleotides ABID97_RS00330: ABID97_RS00330 - efflux transporter outer membrane subunit, at 75,861 to 77,285 _RS00330 ABID97_RS00335: ABID97_RS00335 - c-type cytochrome, at 77,401 to 78,027 _RS00335 ABID97_RS00340: ABID97_RS00340 - DUF2946 family protein, at 78,098 to 78,646 _RS00340 ABID97_RS00345: ABID97_RS00345 - alpha/beta fold hydrolase, at 78,652 to 79,662 _RS00345 Position (kb) 77 78 79Strain fitness (log2 ratio) -2 -1 0 1at 76.560 kb on + strand, within ABID97_RS00330at 76.561 kb on - strand, within ABID97_RS00330at 76.561 kb on - strand, within ABID97_RS00330at 76.984 kb on - strand, within ABID97_RS00330at 77.175 kb on + strandat 77.238 kb on + strandat 77.342 kb on + strandat 77.342 kb on + strandat 77.342 kb on + strandat 77.342 kb on + strandat 77.343 kb on - strandat 77.343 kb on - strandat 77.343 kb on - strandat 77.343 kb on - strandat 77.345 kb on - strandat 77.419 kb on + strandat 77.419 kb on + strandat 77.419 kb on + strandat 77.420 kb on - strandat 77.420 kb on - strandat 77.533 kb on + strand, within ABID97_RS00335at 77.533 kb on + strand, within ABID97_RS00335at 77.534 kb on - strand, within ABID97_RS00335at 77.534 kb on - strand, within ABID97_RS00335at 77.534 kb on - strand, within ABID97_RS00335at 77.534 kb on - strand, within ABID97_RS00335at 77.534 kb on - strand, within ABID97_RS00335at 77.590 kb on + strand, within ABID97_RS00335at 77.590 kb on + strand, within ABID97_RS00335at 77.800 kb on + strand, within ABID97_RS00335at 77.899 kb on + strand, within ABID97_RS00335at 77.899 kb on + strand, within ABID97_RS00335at 77.900 kb on - strand, within ABID97_RS00335at 78.025 kb on + strandat 78.025 kb on + strandat 78.025 kb on + strandat 78.026 kb on - strandat 78.026 kb on - strandat 78.026 kb on - strandat 78.026 kb on - strandat 78.108 kb on - strandat 78.273 kb on + strand, within ABID97_RS00340at 78.273 kb on + strand, within ABID97_RS00340at 78.274 kb on - strand, within ABID97_RS00340at 78.274 kb on - strand, within ABID97_RS00340at 78.402 kb on + strand, within ABID97_RS00340at 78.402 kb on + strand, within ABID97_RS00340at 78.403 kb on - strand, within ABID97_RS00340at 78.403 kb on - strand, within ABID97_RS00340at 78.403 kb on - strand, within ABID97_RS00340at 78.456 kb on + strand, within ABID97_RS00340at 78.456 kb on + strand, within ABID97_RS00340at 78.457 kb on - strand, within ABID97_RS00340at 78.457 kb on - strand, within ABID97_RS00340at 78.457 kb on - strand, within ABID97_RS00340at 78.457 kb on - strand, within ABID97_RS00340at 78.457 kb on - strand, within ABID97_RS00340at 78.556 kb on - strand, within ABID97_RS00340at 78.556 kb on - strand, within ABID97_RS00340at 78.556 kb on - strand, within ABID97_RS00340at 78.556 kb on - strand, within ABID97_RS00340at 78.591 kb on + strand, within ABID97_RS00340at 78.653 kb on + strandat 78.654 kb on - strandat 78.983 kb on + strand, within ABID97_RS00345at 78.983 kb on + strand, within ABID97_RS00345at 78.983 kb on + strand, within ABID97_RS00345at 78.983 kb on + strand, within ABID97_RS00345at 78.983 kb on + strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345at 78.984 kb on - strand, within ABID97_RS00345

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
remove
76,560 + ABID97_RS00330 0.49 -0.1
76,561 - ABID97_RS00330 0.49 -0.4
76,561 - ABID97_RS00330 0.49 +0.1
76,984 - ABID97_RS00330 0.79 -0.2
77,175 + -0.4
77,238 + -0.6
77,342 + -0.7
77,342 + -0.9
77,342 + +1.0
77,342 + -0.1
77,343 - -0.3
77,343 - +0.2
77,343 - +0.1
77,343 - -0.2
77,345 - -0.8
77,419 + -1.3
77,419 + -0.7
77,419 + -0.5
77,420 - -1.3
77,420 - -0.5
77,533 + ABID97_RS00335 0.21 -0.7
77,533 + ABID97_RS00335 0.21 -1.9
77,534 - ABID97_RS00335 0.21 -0.7
77,534 - ABID97_RS00335 0.21 +0.2
77,534 - ABID97_RS00335 0.21 +0.1
77,534 - ABID97_RS00335 0.21 -0.8
77,534 - ABID97_RS00335 0.21 -0.0
77,590 + ABID97_RS00335 0.30 -0.7
77,590 + ABID97_RS00335 0.30 -0.6
77,800 + ABID97_RS00335 0.64 +1.6
77,899 + ABID97_RS00335 0.79 -0.3
77,899 + ABID97_RS00335 0.79 -1.1
77,900 - ABID97_RS00335 0.80 +0.2
78,025 + +0.1
78,025 + -0.3
78,025 + -0.8
78,026 - +0.8
78,026 - +0.5
78,026 - +0.9
78,026 - +0.1
78,108 - -0.5
78,273 + ABID97_RS00340 0.32 +0.3
78,273 + ABID97_RS00340 0.32 +0.1
78,274 - ABID97_RS00340 0.32 -0.4
78,274 - ABID97_RS00340 0.32 +0.0
78,402 + ABID97_RS00340 0.55 -0.1
78,402 + ABID97_RS00340 0.55 -0.4
78,403 - ABID97_RS00340 0.56 -0.5
78,403 - ABID97_RS00340 0.56 -0.4
78,403 - ABID97_RS00340 0.56 -0.1
78,456 + ABID97_RS00340 0.65 -2.2
78,456 + ABID97_RS00340 0.65 -0.2
78,457 - ABID97_RS00340 0.65 +0.8
78,457 - ABID97_RS00340 0.65 -0.2
78,457 - ABID97_RS00340 0.65 -0.2
78,457 - ABID97_RS00340 0.65 +0.6
78,457 - ABID97_RS00340 0.65 -0.1
78,556 - ABID97_RS00340 0.83 -0.7
78,556 - ABID97_RS00340 0.83 +0.0
78,556 - ABID97_RS00340 0.83 +0.3
78,556 - ABID97_RS00340 0.83 -0.4
78,591 + ABID97_RS00340 0.90 +0.1
78,653 + +0.4
78,654 - -0.3
78,983 + ABID97_RS00345 0.33 +0.4
78,983 + ABID97_RS00345 0.33 -1.0
78,983 + ABID97_RS00345 0.33 -0.6
78,983 + ABID97_RS00345 0.33 -0.3
78,983 + ABID97_RS00345 0.33 -0.2
78,984 - ABID97_RS00345 0.33 -0.5
78,984 - ABID97_RS00345 0.33 -0.3
78,984 - ABID97_RS00345 0.33 -0.0
78,984 - ABID97_RS00345 0.33 -0.8
78,984 - ABID97_RS00345 0.33 -0.1
78,984 - ABID97_RS00345 0.33 -0.1

Or see this region's nucleotide sequence