Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS23895

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS23890 and PFLU_RS23895 are separated by 144 nucleotidesPFLU_RS23895 and PFLU_RS23900 are separated by 176 nucleotides PFLU_RS23890: PFLU_RS23890 - pseudouridine synthase, at 5,354,287 to 5,355,498 _RS23890 PFLU_RS23895: PFLU_RS23895 - DUF1289 domain-containing protein, at 5,355,643 to 5,355,834 _RS23895 PFLU_RS23900: PFLU_RS23900 - SMC-Scp complex subunit ScpB, at 5,356,011 to 5,356,943 _RS23900 Position (kb) 5355 5356Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5354.659 kb on - strand, within PFLU_RS23890at 5354.667 kb on + strand, within PFLU_RS23890at 5354.667 kb on + strand, within PFLU_RS23890at 5354.667 kb on + strand, within PFLU_RS23890at 5354.668 kb on - strand, within PFLU_RS23890at 5354.668 kb on - strand, within PFLU_RS23890at 5355.502 kb on - strandat 5355.502 kb on - strandat 5355.502 kb on - strandat 5355.502 kb on - strandat 5355.502 kb on - strandat 5355.502 kb on - strandat 5355.568 kb on + strandat 5355.568 kb on + strandat 5355.569 kb on - strandat 5355.593 kb on + strandat 5355.593 kb on + strandat 5355.594 kb on - strandat 5355.625 kb on + strandat 5355.626 kb on - strandat 5355.633 kb on - strandat 5355.711 kb on + strand, within PFLU_RS23895at 5356.003 kb on - strandat 5356.003 kb on - strandat 5356.003 kb on - strandat 5356.151 kb on + strand, within PFLU_RS23900at 5356.152 kb on - strand, within PFLU_RS23900at 5356.152 kb on - strand, within PFLU_RS23900at 5356.152 kb on - strand, within PFLU_RS23900at 5356.152 kb on - strand, within PFLU_RS23900at 5356.437 kb on + strand, within PFLU_RS23900at 5356.438 kb on - strand, within PFLU_RS23900at 5356.669 kb on + strand, within PFLU_RS23900at 5356.670 kb on - strand, within PFLU_RS23900at 5356.725 kb on + strand, within PFLU_RS23900at 5356.725 kb on + strand, within PFLU_RS23900at 5356.725 kb on + strand, within PFLU_RS23900at 5356.725 kb on + strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900at 5356.726 kb on - strand, within PFLU_RS23900

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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5,354,659 - PFLU_RS23890 0.31 -0.1
5,354,667 + PFLU_RS23890 0.31 +2.9
5,354,667 + PFLU_RS23890 0.31 -1.1
5,354,667 + PFLU_RS23890 0.31 +0.9
5,354,668 - PFLU_RS23890 0.31 +1.1
5,354,668 - PFLU_RS23890 0.31 +1.2
5,355,502 - +0.5
5,355,502 - -0.2
5,355,502 - +0.2
5,355,502 - +0.4
5,355,502 - -1.1
5,355,502 - +0.4
5,355,568 + +0.4
5,355,568 + +1.9
5,355,569 - +0.9
5,355,593 + +0.1
5,355,593 + +0.5
5,355,594 - -0.5
5,355,625 + +0.4
5,355,626 - +0.6
5,355,633 - +0.5
5,355,711 + PFLU_RS23895 0.35 -0.7
5,356,003 - -1.2
5,356,003 - -1.1
5,356,003 - -0.5
5,356,151 + PFLU_RS23900 0.15 -2.0
5,356,152 - PFLU_RS23900 0.15 +0.4
5,356,152 - PFLU_RS23900 0.15 +0.9
5,356,152 - PFLU_RS23900 0.15 -0.1
5,356,152 - PFLU_RS23900 0.15 -1.0
5,356,437 + PFLU_RS23900 0.46 +0.7
5,356,438 - PFLU_RS23900 0.46 +0.0
5,356,669 + PFLU_RS23900 0.71 +0.2
5,356,670 - PFLU_RS23900 0.71 +0.5
5,356,725 + PFLU_RS23900 0.77 +0.7
5,356,725 + PFLU_RS23900 0.77 -1.7
5,356,725 + PFLU_RS23900 0.77 +0.6
5,356,725 + PFLU_RS23900 0.77 -0.7
5,356,726 - PFLU_RS23900 0.77 -0.3
5,356,726 - PFLU_RS23900 0.77 -0.5
5,356,726 - PFLU_RS23900 0.77 +0.0
5,356,726 - PFLU_RS23900 0.77 +1.6
5,356,726 - PFLU_RS23900 0.77 +0.2
5,356,726 - PFLU_RS23900 0.77 -1.1
5,356,726 - PFLU_RS23900 0.77 -1.1

Or see this region's nucleotide sequence