Experiment: Trisodium citrate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS23890 and PFLU_RS23895 are separated by 144 nucleotides PFLU_RS23895 and PFLU_RS23900 are separated by 176 nucleotides
PFLU_RS23890: PFLU_RS23890 - pseudouridine synthase, at 5,354,287 to 5,355,498
_RS23890
PFLU_RS23895: PFLU_RS23895 - DUF1289 domain-containing protein, at 5,355,643 to 5,355,834
_RS23895
PFLU_RS23900: PFLU_RS23900 - SMC-Scp complex subunit ScpB, at 5,356,011 to 5,356,943
_RS23900
Position (kb)
5355
5356 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5354.659 kb on - strand, within PFLU_RS23890 at 5354.667 kb on + strand, within PFLU_RS23890 at 5354.667 kb on + strand, within PFLU_RS23890 at 5354.667 kb on + strand, within PFLU_RS23890 at 5354.668 kb on - strand, within PFLU_RS23890 at 5354.668 kb on - strand, within PFLU_RS23890 at 5355.502 kb on - strand at 5355.502 kb on - strand at 5355.502 kb on - strand at 5355.502 kb on - strand at 5355.502 kb on - strand at 5355.502 kb on - strand at 5355.568 kb on + strand at 5355.568 kb on + strand at 5355.569 kb on - strand at 5355.593 kb on + strand at 5355.593 kb on + strand at 5355.594 kb on - strand at 5355.625 kb on + strand at 5355.626 kb on - strand at 5355.633 kb on - strand at 5355.711 kb on + strand, within PFLU_RS23895 at 5356.003 kb on - strand at 5356.003 kb on - strand at 5356.003 kb on - strand at 5356.151 kb on + strand, within PFLU_RS23900 at 5356.152 kb on - strand, within PFLU_RS23900 at 5356.152 kb on - strand, within PFLU_RS23900 at 5356.152 kb on - strand, within PFLU_RS23900 at 5356.152 kb on - strand, within PFLU_RS23900 at 5356.437 kb on + strand, within PFLU_RS23900 at 5356.438 kb on - strand, within PFLU_RS23900 at 5356.669 kb on + strand, within PFLU_RS23900 at 5356.670 kb on - strand, within PFLU_RS23900 at 5356.725 kb on + strand, within PFLU_RS23900 at 5356.725 kb on + strand, within PFLU_RS23900 at 5356.725 kb on + strand, within PFLU_RS23900 at 5356.725 kb on + strand, within PFLU_RS23900 at 5356.726 kb on - strand, within PFLU_RS23900 at 5356.726 kb on - strand, within PFLU_RS23900 at 5356.726 kb on - strand, within PFLU_RS23900 at 5356.726 kb on - strand, within PFLU_RS23900 at 5356.726 kb on - strand, within PFLU_RS23900 at 5356.726 kb on - strand, within PFLU_RS23900 at 5356.726 kb on - strand, within PFLU_RS23900
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS remove 5,354,659 - PFLU_RS23890 0.31 -0.1 5,354,667 + PFLU_RS23890 0.31 +2.9 5,354,667 + PFLU_RS23890 0.31 -1.1 5,354,667 + PFLU_RS23890 0.31 +0.9 5,354,668 - PFLU_RS23890 0.31 +1.1 5,354,668 - PFLU_RS23890 0.31 +1.2 5,355,502 - +0.5 5,355,502 - -0.2 5,355,502 - +0.2 5,355,502 - +0.4 5,355,502 - -1.1 5,355,502 - +0.4 5,355,568 + +0.4 5,355,568 + +1.9 5,355,569 - +0.9 5,355,593 + +0.1 5,355,593 + +0.5 5,355,594 - -0.5 5,355,625 + +0.4 5,355,626 - +0.6 5,355,633 - +0.5 5,355,711 + PFLU_RS23895 0.35 -0.7 5,356,003 - -1.2 5,356,003 - -1.1 5,356,003 - -0.5 5,356,151 + PFLU_RS23900 0.15 -2.0 5,356,152 - PFLU_RS23900 0.15 +0.4 5,356,152 - PFLU_RS23900 0.15 +0.9 5,356,152 - PFLU_RS23900 0.15 -0.1 5,356,152 - PFLU_RS23900 0.15 -1.0 5,356,437 + PFLU_RS23900 0.46 +0.7 5,356,438 - PFLU_RS23900 0.46 +0.0 5,356,669 + PFLU_RS23900 0.71 +0.2 5,356,670 - PFLU_RS23900 0.71 +0.5 5,356,725 + PFLU_RS23900 0.77 +0.7 5,356,725 + PFLU_RS23900 0.77 -1.7 5,356,725 + PFLU_RS23900 0.77 +0.6 5,356,725 + PFLU_RS23900 0.77 -0.7 5,356,726 - PFLU_RS23900 0.77 -0.3 5,356,726 - PFLU_RS23900 0.77 -0.5 5,356,726 - PFLU_RS23900 0.77 +0.0 5,356,726 - PFLU_RS23900 0.77 +1.6 5,356,726 - PFLU_RS23900 0.77 +0.2 5,356,726 - PFLU_RS23900 0.77 -1.1 5,356,726 - PFLU_RS23900 0.77 -1.1
Or see this region's nucleotide sequence