Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08610

Experiment: Trisodium citrate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C); with MOPS
1,917,533	+				+0.0
1,917,533	+				-1.2
1,917,533	+				+1.7
1,917,534	-				+1.1
1,917,534	-				+0.3
1,917,677	+				-0.8
1,917,677	+				-1.4
1,917,677	+				+0.3
1,917,678	-				+0.7
1,917,678	-				+1.0
1,917,678	-				-1.6
1,917,679	+				-0.1
1,917,679	+				-0.3
1,917,679	+				+1.6
1,917,679	+				-0.6
1,917,679	+				-0.4
1,917,679	+				-0.7
1,917,679	+				-1.4
1,917,679	+				+0.4
1,917,680	-				+0.3
1,917,680	-				+1.2
1,917,680	-				-1.6
1,917,680	-				+0.2
1,917,680	-				+0.0
1,917,680	-				+0.9
1,917,680	-				+1.1
1,917,680	-				-1.0
1,917,740	+				+0.3
1,917,741	-				-0.7
1,917,741	-				+1.0
1,917,741	-				-0.0
1,917,741	-				-0.3
1,917,741	-				+1.4
1,917,741	-				+0.9
1,917,753	+				-0.3
1,917,753	+				-0.6
1,917,753	+				+0.3
1,917,753	+				+0.4
1,917,754	-				+0.2
1,917,919	+		PFLU_RS08600	0.59	+0.5
1,917,920	-		PFLU_RS08600	0.60	+1.2
1,917,920	-		PFLU_RS08600	0.60	+0.9
1,917,920	-		PFLU_RS08600	0.60	+0.7
1,917,920	-		PFLU_RS08600	0.60	-0.8
1,918,037	+				+0.4
1,918,037	+				+0.2
1,918,037	+				+0.3
1,918,037	+				+1.4
1,918,038	-				-0.8
1,918,038	-				+0.0
1,918,041	+				+0.7
1,918,050	-				+1.1
1,918,054	+				+0.2
1,918,055	-				-2.0
1,918,077	-				-0.0
1,918,224	+		PFLU_RS08605	0.40	+1.0
1,918,225	-		PFLU_RS08605	0.40	-2.0
1,918,225	-		PFLU_RS08605	0.40	+0.5
1,918,307	+		PFLU_RS08605	0.65	-1.6
1,918,307	+		PFLU_RS08605	0.65	-0.2
1,918,308	-		PFLU_RS08605	0.65	-0.0
1,918,308	-		PFLU_RS08605	0.65	-0.1
1,918,309	+		PFLU_RS08605	0.65	-0.1
1,918,309	+		PFLU_RS08605	0.65	+1.3
1,918,309	+		PFLU_RS08605	0.65	+0.3
1,918,309	+		PFLU_RS08605	0.65	+0.3
1,918,310	-		PFLU_RS08605	0.65	-0.0
1,918,310	-		PFLU_RS08605	0.65	-0.7
1,918,310	-		PFLU_RS08605	0.65	+0.5
1,918,318	+		PFLU_RS08605	0.68	+1.2
1,918,318	+		PFLU_RS08605	0.68	+0.1
1,918,319	-		PFLU_RS08605	0.68	+0.3
1,918,319	-		PFLU_RS08605	0.68	+0.2
1,918,435	+				+0.6
1,918,545	+				+0.2
1,918,545	+				-1.5
1,918,545	+				-0.4
1,918,545	+				+0.1
1,918,545	+				-1.1
1,918,545	+				+1.4
1,918,545	+				+0.5
1,918,546	-				+0.4
1,918,546	-				+0.9
1,918,546	-				+0.2
1,918,689	+		PFLU_RS08610	0.22	-0.8
1,918,689	+		PFLU_RS08610	0.22	-0.3
1,918,690	-		PFLU_RS08610	0.22	+0.6
1,918,690	-		PFLU_RS08610	0.22	-0.5
1,918,710	+		PFLU_RS08610	0.24	-0.7
1,918,710	+		PFLU_RS08610	0.24	+0.0
1,918,710	+		PFLU_RS08610	0.24	-2.2
1,918,710	+		PFLU_RS08610	0.24	-0.1
1,918,710	+		PFLU_RS08610	0.24	+2.0
1,918,710	+		PFLU_RS08610	0.24	+0.5
1,918,710	+		PFLU_RS08610	0.24	-0.5
1,918,710	+		PFLU_RS08610	0.24	+0.8
1,918,711	-		PFLU_RS08610	0.24	+1.1
1,918,711	-		PFLU_RS08610	0.24	+0.3
1,918,711	-		PFLU_RS08610	0.24	+0.4
1,918,711	-		PFLU_RS08610	0.24	+1.4
1,918,711	-		PFLU_RS08610	0.24	-3.1
1,918,711	-		PFLU_RS08610	0.24	-0.5
1,918,711	-		PFLU_RS08610	0.24	-0.8
1,918,711	-		PFLU_RS08610	0.24	-0.6
1,918,711	-		PFLU_RS08610	0.24	+0.6
1,918,713	+		PFLU_RS08610	0.24	-2.0
1,918,713	+		PFLU_RS08610	0.24	+1.0
1,918,713	+		PFLU_RS08610	0.24	+0.4
1,918,713	+		PFLU_RS08610	0.24	-0.8
1,918,713	+		PFLU_RS08610	0.24	-0.8
1,918,714	-		PFLU_RS08610	0.24	-1.0
1,918,714	-		PFLU_RS08610	0.24	-2.2
1,918,714	-		PFLU_RS08610	0.24	-2.1
1,918,714	-		PFLU_RS08610	0.24	-0.6
1,918,714	-		PFLU_RS08610	0.24	+0.9
1,918,714	-		PFLU_RS08610	0.24	+0.0
1,918,714	-		PFLU_RS08610	0.24	-2.3
1,918,767	+		PFLU_RS08610	0.30	+0.0
1,918,833	+		PFLU_RS08610	0.38	-0.4
1,918,833	+		PFLU_RS08610	0.38	-0.1
1,918,833	+		PFLU_RS08610	0.38	+0.2
1,918,833	+		PFLU_RS08610	0.38	+0.2
1,918,833	+		PFLU_RS08610	0.38	+1.7
1,918,833	+		PFLU_RS08610	0.38	+2.5
1,918,834	-		PFLU_RS08610	0.38	+0.7
1,918,834	-		PFLU_RS08610	0.38	-0.3
1,918,834	-		PFLU_RS08610	0.38	-0.2
1,918,834	-		PFLU_RS08610	0.38	-1.2
1,918,917	-		PFLU_RS08610	0.47	+0.7
1,918,917	-		PFLU_RS08610	0.47	-0.1
1,919,054	+		PFLU_RS08610	0.63	-0.3
1,919,054	+		PFLU_RS08610	0.63	+1.6
1,919,054	+		PFLU_RS08610	0.63	+0.2
1,919,054	+		PFLU_RS08610	0.63	+1.7
1,919,054	+		PFLU_RS08610	0.63	+0.6
1,919,054	+		PFLU_RS08610	0.63	+0.9
1,919,054	+		PFLU_RS08610	0.63	+1.3
1,919,054	+		PFLU_RS08610	0.63	-0.1
1,919,054	+		PFLU_RS08610	0.63	-2.1
1,919,054	+		PFLU_RS08610	0.63	+2.0
1,919,054	+		PFLU_RS08610	0.63	+0.5
1,919,054	+		PFLU_RS08610	0.63	+0.2
1,919,054	+		PFLU_RS08610	0.63	+0.2
1,919,055	-		PFLU_RS08610	0.63	-0.5
1,919,055	-		PFLU_RS08610	0.63	+1.2
1,919,055	-		PFLU_RS08610	0.63	+1.7
1,919,055	-		PFLU_RS08610	0.63	-1.2
1,919,055	-		PFLU_RS08610	0.63	+0.2
1,919,055	-		PFLU_RS08610	0.63	+0.2
1,919,055	-		PFLU_RS08610	0.63	+0.2
1,919,055	-		PFLU_RS08610	0.63	+0.9
1,919,068	+		PFLU_RS08610	0.64	-1.0
1,919,069	-		PFLU_RS08610	0.64	+1.0
1,919,069	-		PFLU_RS08610	0.64	+0.3
1,919,158	+		PFLU_RS08610	0.74	+0.9
1,919,158	+		PFLU_RS08610	0.74	+0.9
1,919,158	+		PFLU_RS08610	0.74	+0.3
1,919,235	-		PFLU_RS08610	0.83	+1.5
1,919,253	+		PFLU_RS08610	0.85	+0.7
1,919,254	-		PFLU_RS08610	0.85	-0.1
1,919,320	+				+0.1
1,919,321	-				-0.5
1,919,321	-				+0.5
1,919,444	+				-0.6
1,919,444	+				+0.7
1,919,444	+				+0.7
1,919,445	-				+0.5
1,919,445	-				+1.5
1,919,517	-		PFLU_RS08615	0.33	-0.8
1,919,537	+		PFLU_RS08615	0.42	-0.4
1,919,537	+		PFLU_RS08615	0.42	+0.3
1,919,538	-		PFLU_RS08615	0.43	-0.5
1,919,538	-		PFLU_RS08615	0.43	+0.9
1,919,538	-		PFLU_RS08615	0.43	-1.2
1,919,538	-		PFLU_RS08615	0.43	+1.2
1,919,684	+				+0.8
1,919,684	+				-0.3
1,919,685	-				-0.1
1,919,691	+				-0.2
1,919,694	+				+0.9
1,919,695	-				-1.4
1,919,695	-				-0.7
1,919,695	-				+1.3
1,919,771	+				-1.3
1,919,771	+				+1.0
1,919,785	+				+1.2
1,919,785	+				+1.4
1,919,788	+				+0.6
1,919,788	+				+0.5
1,919,788	+				-0.6
1,919,788	+				-1.6
1,919,788	+				-0.8
1,919,788	+				-0.1
1,919,789	-				+0.0
1,919,789	-				+0.9
1,919,789	-				+0.6
1,919,789	-				-0.8
1,919,789	-				+3.1
1,919,789	-				-0.0
1,920,147	+		PFLU_RS08620	0.67	-0.1
1,920,221	+		PFLU_RS08620	0.79	-1.1
1,920,222	-		PFLU_RS08620	0.79	-0.1
1,920,384	+				-0.5
1,920,384	+				-0.1
1,920,384	+				-0.3
1,920,384	+				+2.0
1,920,384	+				-0.9
1,920,384	+				-1.6
1,920,384	+				+0.1
1,920,385	-				+0.6
1,920,385	-				+1.6
1,920,385	-				-1.6
1,920,385	-				-0.8
1,920,385	-				+0.1
1,920,385	-				-0.7
1,920,385	-				+0.4
1,920,386	+				+0.9
1,920,386	+				+0.1
1,920,386	+				+0.4
1,920,386	+				+1.2
1,920,386	+				+0.4
1,920,386	+				-0.8
1,920,386	+				+0.1
1,920,386	+				-1.1
1,920,386	+				-1.3
1,920,386	+				+1.3
1,920,386	+				-0.8
1,920,386	+				-0.7
1,920,386	+				+0.6
1,920,386	+				+0.1
1,920,386	+				+0.3
1,920,386	+				+1.2
1,920,386	+				-1.3
1,920,386	+				-1.3
1,920,386	+				-0.4
1,920,387	-				+0.6
1,920,387	-				-0.1
1,920,387	-				-0.9
1,920,387	-				-0.4
1,920,387	-				-2.2
1,920,387	-				+0.1
1,920,387	-				+0.1
1,920,387	-				-0.8
1,920,387	-				-0.7