Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS08105

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS08100 and PFLU_RS08105 overlap by 8 nucleotidesPFLU_RS08105 and PFLU_RS08110 overlap by 4 nucleotidesPFLU_RS08110 and PFLU_RS08115 are separated by 120 nucleotides PFLU_RS08100: PFLU_RS08100 - histidinol-phosphate transaminase, at 1,806,799 to 1,807,911 _RS08100 PFLU_RS08105: PFLU_RS08105 - bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase, at 1,807,904 to 1,810,150 _RS08105 PFLU_RS08110: PFLU_RS08110 - (d)CMP kinase, at 1,810,147 to 1,810,836 _RS08110 PFLU_RS08115: PFLU_RS08115 - 30S ribosomal protein S1, at 1,810,957 to 1,812,648 _RS08115 Position (kb) 1807 1808 1809 1810 1811Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1806.957 kb on + strand, within PFLU_RS08100at 1806.957 kb on + strand, within PFLU_RS08100at 1807.123 kb on + strand, within PFLU_RS08100at 1807.174 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.396 kb on + strand, within PFLU_RS08100at 1807.816 kb on + strandat 1807.816 kb on + strandat 1807.816 kb on + strandat 1807.816 kb on + strandat 1808.458 kb on + strand, within PFLU_RS08105at 1808.459 kb on - strand, within PFLU_RS08105at 1808.745 kb on + strand, within PFLU_RS08105at 1808.813 kb on + strand, within PFLU_RS08105at 1808.813 kb on + strand, within PFLU_RS08105at 1808.813 kb on + strand, within PFLU_RS08105at 1809.107 kb on + strand, within PFLU_RS08105at 1809.107 kb on + strand, within PFLU_RS08105at 1809.107 kb on + strand, within PFLU_RS08105at 1809.107 kb on + strand, within PFLU_RS08105at 1809.323 kb on + strand, within PFLU_RS08105at 1809.323 kb on + strand, within PFLU_RS08105at 1809.380 kb on + strand, within PFLU_RS08105at 1809.380 kb on + strand, within PFLU_RS08105at 1809.381 kb on - strand, within PFLU_RS08105at 1809.523 kb on + strand, within PFLU_RS08105at 1809.524 kb on - strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.525 kb on + strand, within PFLU_RS08105at 1809.526 kb on - strand, within PFLU_RS08105at 1809.564 kb on + strand, within PFLU_RS08105at 1809.946 kb on + strandat 1809.946 kb on + strandat 1809.946 kb on + strandat 1810.023 kb on + strandat 1810.023 kb on + strandat 1810.023 kb on + strandat 1810.023 kb on + strandat 1810.078 kb on + strandat 1810.078 kb on + strandat 1810.078 kb on + strandat 1810.078 kb on + strandat 1810.078 kb on + strandat 1810.099 kb on + strandat 1810.099 kb on + strandat 1810.099 kb on + strandat 1810.099 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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1,806,957 + PFLU_RS08100 0.14 +0.8
1,806,957 + PFLU_RS08100 0.14 +0.8
1,807,123 + PFLU_RS08100 0.29 +0.9
1,807,174 + PFLU_RS08100 0.34 +1.8
1,807,396 + PFLU_RS08100 0.54 +0.6
1,807,396 + PFLU_RS08100 0.54 +0.8
1,807,396 + PFLU_RS08100 0.54 +0.1
1,807,396 + PFLU_RS08100 0.54 +1.2
1,807,396 + PFLU_RS08100 0.54 -0.2
1,807,816 + +0.8
1,807,816 + -1.1
1,807,816 + +0.1
1,807,816 + +0.2
1,808,458 + PFLU_RS08105 0.25 +0.8
1,808,459 - PFLU_RS08105 0.25 +1.8
1,808,745 + PFLU_RS08105 0.37 +1.8
1,808,813 + PFLU_RS08105 0.40 +0.6
1,808,813 + PFLU_RS08105 0.40 -0.4
1,808,813 + PFLU_RS08105 0.40 +0.8
1,809,107 + PFLU_RS08105 0.54 +0.5
1,809,107 + PFLU_RS08105 0.54 -0.1
1,809,107 + PFLU_RS08105 0.54 +1.8
1,809,107 + PFLU_RS08105 0.54 +2.3
1,809,323 + PFLU_RS08105 0.63 +1.8
1,809,323 + PFLU_RS08105 0.63 +1.8
1,809,380 + PFLU_RS08105 0.66 +0.8
1,809,380 + PFLU_RS08105 0.66 +1.8
1,809,381 - PFLU_RS08105 0.66 +1.8
1,809,523 + PFLU_RS08105 0.72 +1.8
1,809,524 - PFLU_RS08105 0.72 +0.8
1,809,525 + PFLU_RS08105 0.72 +2.8
1,809,525 + PFLU_RS08105 0.72 +0.2
1,809,525 + PFLU_RS08105 0.72 +1.8
1,809,525 + PFLU_RS08105 0.72 +1.8
1,809,525 + PFLU_RS08105 0.72 +1.8
1,809,525 + PFLU_RS08105 0.72 +1.8
1,809,525 + PFLU_RS08105 0.72 +1.8
1,809,525 + PFLU_RS08105 0.72 +1.8
1,809,525 + PFLU_RS08105 0.72 +1.8
1,809,525 + PFLU_RS08105 0.72 +1.8
1,809,525 + PFLU_RS08105 0.72 +1.8
1,809,526 - PFLU_RS08105 0.72 +0.8
1,809,564 + PFLU_RS08105 0.74 +0.4
1,809,946 + -0.2
1,809,946 + -0.0
1,809,946 + +3.0
1,810,023 + -0.7
1,810,023 + +0.7
1,810,023 + +0.3
1,810,023 + +0.7
1,810,078 + +0.4
1,810,078 + -0.1
1,810,078 + +0.9
1,810,078 + +0.3
1,810,078 + +0.4
1,810,099 + -0.9
1,810,099 + +0.2
1,810,099 + -1.9
1,810,099 + -0.1

Or see this region's nucleotide sequence