Experiment: Trisodium citrate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS08100 and PFLU_RS08105 overlap by 8 nucleotides PFLU_RS08105 and PFLU_RS08110 overlap by 4 nucleotides PFLU_RS08110 and PFLU_RS08115 are separated by 120 nucleotides
PFLU_RS08100: PFLU_RS08100 - histidinol-phosphate transaminase, at 1,806,799 to 1,807,911
_RS08100
PFLU_RS08105: PFLU_RS08105 - bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase, at 1,807,904 to 1,810,150
_RS08105
PFLU_RS08110: PFLU_RS08110 - (d)CMP kinase, at 1,810,147 to 1,810,836
_RS08110
PFLU_RS08115: PFLU_RS08115 - 30S ribosomal protein S1, at 1,810,957 to 1,812,648
_RS08115
Position (kb)
1807
1808
1809
1810
1811 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1806.957 kb on + strand, within PFLU_RS08100 at 1806.957 kb on + strand, within PFLU_RS08100 at 1807.123 kb on + strand, within PFLU_RS08100 at 1807.174 kb on + strand, within PFLU_RS08100 at 1807.396 kb on + strand, within PFLU_RS08100 at 1807.396 kb on + strand, within PFLU_RS08100 at 1807.396 kb on + strand, within PFLU_RS08100 at 1807.396 kb on + strand, within PFLU_RS08100 at 1807.396 kb on + strand, within PFLU_RS08100 at 1807.816 kb on + strand at 1807.816 kb on + strand at 1807.816 kb on + strand at 1807.816 kb on + strand at 1808.458 kb on + strand, within PFLU_RS08105 at 1808.459 kb on - strand, within PFLU_RS08105 at 1808.745 kb on + strand, within PFLU_RS08105 at 1808.813 kb on + strand, within PFLU_RS08105 at 1808.813 kb on + strand, within PFLU_RS08105 at 1808.813 kb on + strand, within PFLU_RS08105 at 1809.107 kb on + strand, within PFLU_RS08105 at 1809.107 kb on + strand, within PFLU_RS08105 at 1809.107 kb on + strand, within PFLU_RS08105 at 1809.107 kb on + strand, within PFLU_RS08105 at 1809.323 kb on + strand, within PFLU_RS08105 at 1809.323 kb on + strand, within PFLU_RS08105 at 1809.380 kb on + strand, within PFLU_RS08105 at 1809.380 kb on + strand, within PFLU_RS08105 at 1809.381 kb on - strand, within PFLU_RS08105 at 1809.523 kb on + strand, within PFLU_RS08105 at 1809.524 kb on - strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.525 kb on + strand, within PFLU_RS08105 at 1809.526 kb on - strand, within PFLU_RS08105 at 1809.564 kb on + strand, within PFLU_RS08105 at 1809.946 kb on + strand at 1809.946 kb on + strand at 1809.946 kb on + strand at 1810.023 kb on + strand at 1810.023 kb on + strand at 1810.023 kb on + strand at 1810.023 kb on + strand at 1810.078 kb on + strand at 1810.078 kb on + strand at 1810.078 kb on + strand at 1810.078 kb on + strand at 1810.078 kb on + strand at 1810.099 kb on + strand at 1810.099 kb on + strand at 1810.099 kb on + strand at 1810.099 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS remove 1,806,957 + PFLU_RS08100 0.14 +0.8 1,806,957 + PFLU_RS08100 0.14 +0.8 1,807,123 + PFLU_RS08100 0.29 +0.9 1,807,174 + PFLU_RS08100 0.34 +1.8 1,807,396 + PFLU_RS08100 0.54 +0.6 1,807,396 + PFLU_RS08100 0.54 +0.8 1,807,396 + PFLU_RS08100 0.54 +0.1 1,807,396 + PFLU_RS08100 0.54 +1.2 1,807,396 + PFLU_RS08100 0.54 -0.2 1,807,816 + +0.8 1,807,816 + -1.1 1,807,816 + +0.1 1,807,816 + +0.2 1,808,458 + PFLU_RS08105 0.25 +0.8 1,808,459 - PFLU_RS08105 0.25 +1.8 1,808,745 + PFLU_RS08105 0.37 +1.8 1,808,813 + PFLU_RS08105 0.40 +0.6 1,808,813 + PFLU_RS08105 0.40 -0.4 1,808,813 + PFLU_RS08105 0.40 +0.8 1,809,107 + PFLU_RS08105 0.54 +0.5 1,809,107 + PFLU_RS08105 0.54 -0.1 1,809,107 + PFLU_RS08105 0.54 +1.8 1,809,107 + PFLU_RS08105 0.54 +2.3 1,809,323 + PFLU_RS08105 0.63 +1.8 1,809,323 + PFLU_RS08105 0.63 +1.8 1,809,380 + PFLU_RS08105 0.66 +0.8 1,809,380 + PFLU_RS08105 0.66 +1.8 1,809,381 - PFLU_RS08105 0.66 +1.8 1,809,523 + PFLU_RS08105 0.72 +1.8 1,809,524 - PFLU_RS08105 0.72 +0.8 1,809,525 + PFLU_RS08105 0.72 +2.8 1,809,525 + PFLU_RS08105 0.72 +0.2 1,809,525 + PFLU_RS08105 0.72 +1.8 1,809,525 + PFLU_RS08105 0.72 +1.8 1,809,525 + PFLU_RS08105 0.72 +1.8 1,809,525 + PFLU_RS08105 0.72 +1.8 1,809,525 + PFLU_RS08105 0.72 +1.8 1,809,525 + PFLU_RS08105 0.72 +1.8 1,809,525 + PFLU_RS08105 0.72 +1.8 1,809,525 + PFLU_RS08105 0.72 +1.8 1,809,525 + PFLU_RS08105 0.72 +1.8 1,809,526 - PFLU_RS08105 0.72 +0.8 1,809,564 + PFLU_RS08105 0.74 +0.4 1,809,946 + -0.2 1,809,946 + -0.0 1,809,946 + +3.0 1,810,023 + -0.7 1,810,023 + +0.7 1,810,023 + +0.3 1,810,023 + +0.7 1,810,078 + +0.4 1,810,078 + -0.1 1,810,078 + +0.9 1,810,078 + +0.3 1,810,078 + +0.4 1,810,099 + -0.9 1,810,099 + +0.2 1,810,099 + -1.9 1,810,099 + -0.1
Or see this region's nucleotide sequence