Experiment: Trisodium citrate (C); with MOPS
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFLU_RS07530 and PFLU_RS07535 are separated by 24 nucleotides PFLU_RS07535 and PFLU_RS07540 are separated by 30 nucleotides PFLU_RS07540 and PFLU_RS07545 are separated by 11 nucleotides PFLU_RS07545 and PFLU_RS07550 are separated by 124 nucleotides
PFLU_RS07530: PFLU_RS07530 - S9 family peptidase, at 1,672,239 to 1,674,281
_RS07530
PFLU_RS07535: PFLU_RS07535 - hypothetical protein, at 1,674,306 to 1,674,842
_RS07535
PFLU_RS07540: PFLU_RS07540 - class II glutamine amidotransferase, at 1,674,873 to 1,675,649
_RS07540
PFLU_RS07545: PFLU_RS07545 - DUF2937 family protein, at 1,675,661 to 1,676,203
_RS07545
PFLU_RS07550: PFLU_RS07550 - LysR family transcriptional regulator, at 1,676,328 to 1,677,251
_RS07550
Position (kb) 1674
1675
1676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1674.046 kb on + strand, within PFLU_RS07530 at 1674.046 kb on + strand, within PFLU_RS07530 at 1674.046 kb on + strand, within PFLU_RS07530 at 1674.046 kb on + strand, within PFLU_RS07530 at 1674.046 kb on + strand, within PFLU_RS07530 at 1674.046 kb on + strand, within PFLU_RS07530 at 1674.046 kb on + strand, within PFLU_RS07530 at 1674.046 kb on + strand, within PFLU_RS07530 at 1674.046 kb on + strand, within PFLU_RS07530 at 1674.046 kb on + strand, within PFLU_RS07530 at 1674.047 kb on - strand, within PFLU_RS07530 at 1674.047 kb on - strand, within PFLU_RS07530 at 1674.047 kb on - strand, within PFLU_RS07530 at 1674.047 kb on - strand, within PFLU_RS07530 at 1674.047 kb on - strand, within PFLU_RS07530 at 1674.047 kb on - strand, within PFLU_RS07530 at 1674.047 kb on - strand, within PFLU_RS07530 at 1674.047 kb on - strand, within PFLU_RS07530 at 1674.047 kb on - strand, within PFLU_RS07530 at 1674.049 kb on + strand, within PFLU_RS07530 at 1674.049 kb on + strand, within PFLU_RS07530 at 1674.049 kb on + strand, within PFLU_RS07530 at 1674.049 kb on + strand, within PFLU_RS07530 at 1674.049 kb on + strand, within PFLU_RS07530 at 1674.049 kb on + strand, within PFLU_RS07530 at 1674.049 kb on + strand, within PFLU_RS07530 at 1674.050 kb on - strand, within PFLU_RS07530 at 1674.050 kb on - strand, within PFLU_RS07530 at 1674.050 kb on - strand, within PFLU_RS07530 at 1674.050 kb on - strand, within PFLU_RS07530 at 1674.050 kb on - strand, within PFLU_RS07530 at 1674.050 kb on - strand, within PFLU_RS07530 at 1674.187 kb on + strand at 1674.188 kb on - strand at 1674.188 kb on - strand at 1674.230 kb on - strand at 1674.230 kb on - strand at 1674.273 kb on + strand at 1674.273 kb on + strand at 1674.273 kb on + strand at 1674.274 kb on - strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.275 kb on + strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.276 kb on - strand at 1674.286 kb on + strand at 1674.286 kb on + strand at 1674.287 kb on - strand at 1674.287 kb on - strand at 1674.293 kb on + strand at 1674.347 kb on + strand at 1674.363 kb on + strand, within PFLU_RS07535 at 1674.364 kb on - strand, within PFLU_RS07535 at 1674.396 kb on + strand, within PFLU_RS07535 at 1674.396 kb on + strand, within PFLU_RS07535 at 1674.396 kb on + strand, within PFLU_RS07535 at 1674.397 kb on - strand, within PFLU_RS07535 at 1674.397 kb on - strand, within PFLU_RS07535 at 1674.397 kb on - strand, within PFLU_RS07535 at 1674.417 kb on + strand, within PFLU_RS07535 at 1674.418 kb on - strand, within PFLU_RS07535 at 1674.418 kb on - strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.645 kb on + strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.646 kb on - strand, within PFLU_RS07535 at 1674.669 kb on + strand, within PFLU_RS07535 at 1674.669 kb on + strand, within PFLU_RS07535 at 1674.669 kb on + strand, within PFLU_RS07535 at 1674.669 kb on + strand, within PFLU_RS07535 at 1674.669 kb on + strand, within PFLU_RS07535 at 1674.669 kb on + strand, within PFLU_RS07535 at 1674.670 kb on - strand, within PFLU_RS07535 at 1674.670 kb on - strand, within PFLU_RS07535 at 1674.670 kb on - strand, within PFLU_RS07535 at 1674.670 kb on - strand, within PFLU_RS07535 at 1674.670 kb on - strand, within PFLU_RS07535 at 1674.670 kb on - strand, within PFLU_RS07535 at 1674.670 kb on - strand, within PFLU_RS07535 at 1674.670 kb on - strand, within PFLU_RS07535 at 1674.670 kb on - strand, within PFLU_RS07535 at 1674.819 kb on - strand at 1674.819 kb on - strand at 1674.826 kb on + strand at 1674.826 kb on + strand at 1674.826 kb on + strand at 1674.827 kb on - strand at 1674.827 kb on - strand at 1674.827 kb on - strand at 1674.827 kb on - strand at 1674.884 kb on - strand at 1674.884 kb on - strand at 1674.993 kb on + strand, within PFLU_RS07540 at 1675.103 kb on + strand, within PFLU_RS07540 at 1675.362 kb on + strand, within PFLU_RS07540 at 1675.419 kb on + strand, within PFLU_RS07540 at 1675.673 kb on + strand at 1675.673 kb on + strand at 1675.673 kb on + strand at 1675.674 kb on - strand at 1675.674 kb on - strand at 1675.732 kb on + strand, within PFLU_RS07545 at 1675.742 kb on + strand, within PFLU_RS07545 at 1675.743 kb on - strand, within PFLU_RS07545 at 1675.964 kb on + strand, within PFLU_RS07545 at 1675.964 kb on + strand, within PFLU_RS07545 at 1675.964 kb on + strand, within PFLU_RS07545 at 1675.964 kb on + strand, within PFLU_RS07545 at 1675.964 kb on + strand, within PFLU_RS07545 at 1675.964 kb on + strand, within PFLU_RS07545 at 1675.964 kb on + strand, within PFLU_RS07545 at 1675.964 kb on + strand, within PFLU_RS07545 at 1675.964 kb on + strand, within PFLU_RS07545 at 1675.965 kb on - strand, within PFLU_RS07545 at 1675.965 kb on - strand, within PFLU_RS07545 at 1675.965 kb on - strand, within PFLU_RS07545 at 1676.030 kb on + strand, within PFLU_RS07545 at 1676.031 kb on - strand, within PFLU_RS07545 at 1676.036 kb on + strand, within PFLU_RS07545 at 1676.036 kb on + strand, within PFLU_RS07545 at 1676.037 kb on - strand, within PFLU_RS07545 at 1676.037 kb on - strand, within PFLU_RS07545 at 1676.037 kb on - strand, within PFLU_RS07545 at 1676.037 kb on - strand, within PFLU_RS07545 at 1676.264 kb on + strand at 1676.264 kb on + strand at 1676.264 kb on + strand at 1676.264 kb on + strand at 1676.264 kb on + strand at 1676.264 kb on + strand at 1676.264 kb on + strand at 1676.264 kb on + strand at 1676.265 kb on - strand at 1676.265 kb on - strand at 1676.265 kb on - strand at 1676.265 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS remove 1,674,046 + PFLU_RS07530 0.88 -0.3 1,674,046 + PFLU_RS07530 0.88 +0.5 1,674,046 + PFLU_RS07530 0.88 -0.3 1,674,046 + PFLU_RS07530 0.88 -0.2 1,674,046 + PFLU_RS07530 0.88 -0.2 1,674,046 + PFLU_RS07530 0.88 +0.3 1,674,046 + PFLU_RS07530 0.88 -0.9 1,674,046 + PFLU_RS07530 0.88 -0.3 1,674,046 + PFLU_RS07530 0.88 +0.8 1,674,046 + PFLU_RS07530 0.88 +0.1 1,674,047 - PFLU_RS07530 0.88 -0.6 1,674,047 - PFLU_RS07530 0.88 -0.2 1,674,047 - PFLU_RS07530 0.88 -0.9 1,674,047 - PFLU_RS07530 0.88 +1.7 1,674,047 - PFLU_RS07530 0.88 -1.1 1,674,047 - PFLU_RS07530 0.88 -0.2 1,674,047 - PFLU_RS07530 0.88 +0.4 1,674,047 - PFLU_RS07530 0.88 +1.2 1,674,047 - PFLU_RS07530 0.88 -0.3 1,674,049 + PFLU_RS07530 0.89 -0.5 1,674,049 + PFLU_RS07530 0.89 +1.2 1,674,049 + PFLU_RS07530 0.89 -0.8 1,674,049 + PFLU_RS07530 0.89 -1.8 1,674,049 + PFLU_RS07530 0.89 -0.0 1,674,049 + PFLU_RS07530 0.89 -0.3 1,674,049 + PFLU_RS07530 0.89 -0.1 1,674,050 - PFLU_RS07530 0.89 +0.7 1,674,050 - PFLU_RS07530 0.89 +0.2 1,674,050 - PFLU_RS07530 0.89 +0.0 1,674,050 - PFLU_RS07530 0.89 +0.2 1,674,050 - PFLU_RS07530 0.89 -0.1 1,674,050 - PFLU_RS07530 0.89 -0.4 1,674,187 + -0.8 1,674,188 - +0.8 1,674,188 - +1.5 1,674,230 - -0.2 1,674,230 - +0.8 1,674,273 + +0.3 1,674,273 + +0.6 1,674,273 + -0.2 1,674,274 - +0.4 1,674,275 + -0.8 1,674,275 + +1.5 1,674,275 + -1.7 1,674,275 + +0.4 1,674,275 + +2.0 1,674,275 + +1.6 1,674,275 + +0.2 1,674,275 + -0.1 1,674,275 + +0.3 1,674,275 + +2.2 1,674,275 + -0.9 1,674,275 + +0.4 1,674,275 + -0.5 1,674,275 + +0.1 1,674,275 + -0.8 1,674,275 + -0.4 1,674,275 + +0.2 1,674,275 + -0.5 1,674,276 - +0.3 1,674,276 - +1.8 1,674,276 - -0.2 1,674,276 - -0.7 1,674,276 - +0.6 1,674,276 - -0.2 1,674,276 - -0.3 1,674,276 - -1.8 1,674,276 - +0.8 1,674,276 - +0.3 1,674,276 - -1.2 1,674,276 - +0.0 1,674,276 - +0.7 1,674,276 - -0.4 1,674,276 - -0.1 1,674,276 - +1.8 1,674,276 - +1.1 1,674,276 - -2.2 1,674,276 - -0.4 1,674,276 - +1.1 1,674,276 - -1.5 1,674,276 - +0.4 1,674,276 - +0.8 1,674,276 - -0.8 1,674,276 - +0.3 1,674,276 - +0.5 1,674,276 - +2.1 1,674,276 - +1.2 1,674,276 - -1.3 1,674,276 - -0.4 1,674,286 + -0.1 1,674,286 + +0.1 1,674,287 - +0.6 1,674,287 - -0.4 1,674,293 + -0.6 1,674,347 + +1.2 1,674,363 + PFLU_RS07535 0.11 +1.0 1,674,364 - PFLU_RS07535 0.11 -2.8 1,674,396 + PFLU_RS07535 0.17 +0.3 1,674,396 + PFLU_RS07535 0.17 +0.1 1,674,396 + PFLU_RS07535 0.17 -1.2 1,674,397 - PFLU_RS07535 0.17 -0.9 1,674,397 - PFLU_RS07535 0.17 +1.1 1,674,397 - PFLU_RS07535 0.17 -0.2 1,674,417 + PFLU_RS07535 0.21 -1.9 1,674,418 - PFLU_RS07535 0.21 -2.1 1,674,418 - PFLU_RS07535 0.21 -1.7 1,674,645 + PFLU_RS07535 0.63 -1.1 1,674,645 + PFLU_RS07535 0.63 -0.9 1,674,645 + PFLU_RS07535 0.63 -1.3 1,674,645 + PFLU_RS07535 0.63 -0.5 1,674,645 + PFLU_RS07535 0.63 -1.1 1,674,645 + PFLU_RS07535 0.63 -0.9 1,674,645 + PFLU_RS07535 0.63 +0.4 1,674,645 + PFLU_RS07535 0.63 -0.4 1,674,645 + PFLU_RS07535 0.63 +0.8 1,674,645 + PFLU_RS07535 0.63 -0.8 1,674,645 + PFLU_RS07535 0.63 -1.4 1,674,645 + PFLU_RS07535 0.63 -0.2 1,674,645 + PFLU_RS07535 0.63 -1.1 1,674,645 + PFLU_RS07535 0.63 +0.3 1,674,645 + PFLU_RS07535 0.63 -0.5 1,674,645 + PFLU_RS07535 0.63 -1.5 1,674,645 + PFLU_RS07535 0.63 -1.9 1,674,645 + PFLU_RS07535 0.63 -1.8 1,674,645 + PFLU_RS07535 0.63 -0.1 1,674,645 + PFLU_RS07535 0.63 +0.2 1,674,645 + PFLU_RS07535 0.63 -1.3 1,674,645 + PFLU_RS07535 0.63 +0.6 1,674,646 - PFLU_RS07535 0.63 +0.3 1,674,646 - PFLU_RS07535 0.63 -0.7 1,674,646 - PFLU_RS07535 0.63 -0.7 1,674,646 - PFLU_RS07535 0.63 -0.0 1,674,646 - PFLU_RS07535 0.63 +0.5 1,674,646 - PFLU_RS07535 0.63 -0.6 1,674,646 - PFLU_RS07535 0.63 -0.8 1,674,646 - PFLU_RS07535 0.63 -0.1 1,674,646 - PFLU_RS07535 0.63 -0.7 1,674,646 - PFLU_RS07535 0.63 -0.7 1,674,646 - PFLU_RS07535 0.63 +0.0 1,674,646 - PFLU_RS07535 0.63 +0.9 1,674,646 - PFLU_RS07535 0.63 +0.2 1,674,646 - PFLU_RS07535 0.63 -1.4 1,674,646 - PFLU_RS07535 0.63 +0.6 1,674,646 - PFLU_RS07535 0.63 +0.1 1,674,669 + PFLU_RS07535 0.68 -0.4 1,674,669 + PFLU_RS07535 0.68 -0.7 1,674,669 + PFLU_RS07535 0.68 -0.2 1,674,669 + PFLU_RS07535 0.68 -0.1 1,674,669 + PFLU_RS07535 0.68 +0.5 1,674,669 + PFLU_RS07535 0.68 -0.0 1,674,670 - PFLU_RS07535 0.68 -0.7 1,674,670 - PFLU_RS07535 0.68 +0.5 1,674,670 - PFLU_RS07535 0.68 -1.5 1,674,670 - PFLU_RS07535 0.68 -1.8 1,674,670 - PFLU_RS07535 0.68 +0.3 1,674,670 - PFLU_RS07535 0.68 +0.0 1,674,670 - PFLU_RS07535 0.68 -1.5 1,674,670 - PFLU_RS07535 0.68 -1.0 1,674,670 - PFLU_RS07535 0.68 -0.5 1,674,819 - -1.1 1,674,819 - -2.4 1,674,826 + +1.2 1,674,826 + +0.4 1,674,826 + -0.5 1,674,827 - +0.2 1,674,827 - +0.4 1,674,827 - +0.0 1,674,827 - -0.3 1,674,884 - -0.2 1,674,884 - +0.1 1,674,993 + PFLU_RS07540 0.15 -0.8 1,675,103 + PFLU_RS07540 0.30 -0.5 1,675,362 + PFLU_RS07540 0.63 -1.3 1,675,419 + PFLU_RS07540 0.70 -0.9 1,675,673 + -0.9 1,675,673 + +0.7 1,675,673 + -0.1 1,675,674 - -0.0 1,675,674 - +0.3 1,675,732 + PFLU_RS07545 0.13 -0.9 1,675,742 + PFLU_RS07545 0.15 +0.3 1,675,743 - PFLU_RS07545 0.15 +0.0 1,675,964 + PFLU_RS07545 0.56 -1.0 1,675,964 + PFLU_RS07545 0.56 +0.9 1,675,964 + PFLU_RS07545 0.56 +0.2 1,675,964 + PFLU_RS07545 0.56 -0.2 1,675,964 + PFLU_RS07545 0.56 +0.4 1,675,964 + PFLU_RS07545 0.56 -0.2 1,675,964 + PFLU_RS07545 0.56 +1.2 1,675,964 + PFLU_RS07545 0.56 +0.3 1,675,964 + PFLU_RS07545 0.56 -0.2 1,675,965 - PFLU_RS07545 0.56 -0.1 1,675,965 - PFLU_RS07545 0.56 +0.8 1,675,965 - PFLU_RS07545 0.56 +1.4 1,676,030 + PFLU_RS07545 0.68 -0.8 1,676,031 - PFLU_RS07545 0.68 -3.3 1,676,036 + PFLU_RS07545 0.69 -0.2 1,676,036 + PFLU_RS07545 0.69 +0.1 1,676,037 - PFLU_RS07545 0.69 +1.3 1,676,037 - PFLU_RS07545 0.69 +1.1 1,676,037 - PFLU_RS07545 0.69 +0.0 1,676,037 - PFLU_RS07545 0.69 -0.2 1,676,264 + -1.9 1,676,264 + -1.5 1,676,264 + -1.0 1,676,264 + +1.5 1,676,264 + -0.1 1,676,264 + -0.6 1,676,264 + +1.7 1,676,264 + +0.4 1,676,265 - +1.1 1,676,265 - +0.1 1,676,265 - -2.5 1,676,265 - -1.0
Or see this region's nucleotide sequence