Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS05500

Experiment: Trisodium citrate (C); with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Trisodium citrate (C); with MOPS
1,237,353	-				+0.4
1,237,353	-				-0.4
1,237,403	-				-0.8
1,237,427	+				-1.5
1,237,454	-				+0.3
1,237,611	+				+0.1
1,237,612	-				+1.0
1,237,612	-				+1.1
1,237,718	+		PFLU_RS05495	0.39	+0.6
1,237,718	+		PFLU_RS05495	0.39	-0.9
1,237,718	+		PFLU_RS05495	0.39	+1.0
1,237,718	+		PFLU_RS05495	0.39	-1.7
1,237,718	+		PFLU_RS05495	0.39	-0.3
1,237,718	+		PFLU_RS05495	0.39	+0.6
1,237,718	+		PFLU_RS05495	0.39	-0.3
1,237,718	+		PFLU_RS05495	0.39	+2.2
1,237,718	+		PFLU_RS05495	0.39	-0.6
1,237,718	+		PFLU_RS05495	0.39	+0.4
1,237,718	+		PFLU_RS05495	0.39	+0.3
1,237,718	+		PFLU_RS05495	0.39	-0.0
1,237,718	+		PFLU_RS05495	0.39	+0.7
1,237,718	+		PFLU_RS05495	0.39	-0.2
1,237,718	+		PFLU_RS05495	0.39	-0.6
1,237,718	+		PFLU_RS05495	0.39	+0.6
1,237,718	+		PFLU_RS05495	0.39	+0.9
1,237,718	+		PFLU_RS05495	0.39	-1.9
1,237,718	+		PFLU_RS05495	0.39	+0.2
1,237,719	-		PFLU_RS05495	0.39	-0.3
1,237,719	-		PFLU_RS05495	0.39	-0.7
1,237,719	-		PFLU_RS05495	0.39	-0.7
1,237,719	-		PFLU_RS05495	0.39	-0.8
1,237,719	-		PFLU_RS05495	0.39	+0.6
1,237,719	-		PFLU_RS05495	0.39	-2.0
1,237,719	-		PFLU_RS05495	0.39	+0.2
1,237,719	-		PFLU_RS05495	0.39	-0.3
1,237,719	-		PFLU_RS05495	0.39	+0.2
1,237,719	-		PFLU_RS05495	0.39	-0.6
1,237,719	-		PFLU_RS05495	0.39	+0.3
1,237,719	-		PFLU_RS05495	0.39	+1.3
1,237,719	-		PFLU_RS05495	0.39	-0.9
1,237,719	-		PFLU_RS05495	0.39	-0.7
1,237,719	-		PFLU_RS05495	0.39	+0.6
1,237,719	-		PFLU_RS05495	0.39	-0.2
1,237,719	-		PFLU_RS05495	0.39	+0.0
1,237,719	-		PFLU_RS05495	0.39	+0.9
1,237,719	-		PFLU_RS05495	0.39	+1.4
1,237,719	-		PFLU_RS05495	0.39	+2.0
1,237,719	-		PFLU_RS05495	0.39	+0.1
1,237,719	-		PFLU_RS05495	0.39	+1.8
1,237,719	-		PFLU_RS05495	0.39	-0.0
1,237,722	+		PFLU_RS05495	0.40	-1.1
1,237,722	+		PFLU_RS05495	0.40	-0.1
1,237,722	+		PFLU_RS05495	0.40	+1.0
1,237,722	+		PFLU_RS05495	0.40	+0.6
1,237,723	-		PFLU_RS05495	0.41	-0.5
1,237,723	-		PFLU_RS05495	0.41	-0.4
1,237,744	+		PFLU_RS05495	0.48	-0.6
1,237,744	+		PFLU_RS05495	0.48	-2.7
1,237,744	+		PFLU_RS05495	0.48	+1.1
1,237,744	+		PFLU_RS05495	0.48	+0.3
1,237,744	+		PFLU_RS05495	0.48	-0.2
1,237,744	+		PFLU_RS05495	0.48	-0.3
1,237,744	+		PFLU_RS05495	0.48	+1.2
1,237,744	+		PFLU_RS05495	0.48	+1.0
1,237,744	+		PFLU_RS05495	0.48	-0.3
1,237,745	-		PFLU_RS05495	0.49	-2.0
1,237,745	-		PFLU_RS05495	0.49	+0.4
1,237,745	-		PFLU_RS05495	0.49	+0.6
1,237,745	-		PFLU_RS05495	0.49	-0.7
1,237,745	-		PFLU_RS05495	0.49	+0.1
1,237,745	-		PFLU_RS05495	0.49	+0.3
1,237,745	-		PFLU_RS05495	0.49	-1.5
1,237,745	-		PFLU_RS05495	0.49	+0.4
1,237,745	-		PFLU_RS05495	0.49	-0.6
1,237,745	-		PFLU_RS05495	0.49	-0.8
1,237,745	-		PFLU_RS05495	0.49	+0.1
1,237,745	-		PFLU_RS05495	0.49	+0.4
1,237,783	+		PFLU_RS05495	0.63	-0.4
1,237,783	+		PFLU_RS05495	0.63	-0.6
1,237,784	-		PFLU_RS05495	0.63	+0.9
1,237,942	+				-0.8
1,237,942	+				+1.1
1,237,976	+				-0.3
1,238,012	+				-2.1
1,238,012	+				-1.5
1,238,012	+				-1.7
1,238,012	+				+0.0
1,238,012	+				-0.3
1,238,012	+				-0.0
1,238,012	+				-0.4
1,238,012	+				+0.8
1,238,013	-				-0.3
1,238,013	-				-0.1
1,238,013	-				-0.0
1,238,013	-				-2.1
1,238,013	-				-1.0
1,238,013	-				-1.3
1,238,013	-				+1.2
1,238,013	-				-1.2
1,238,013	-				-1.5
1,238,055	+				+0.3
1,238,055	+				+0.7
1,238,055	+				+0.3
1,238,056	-				+0.5
1,238,056	-				+0.1
1,238,056	-				+0.5
1,238,056	-				+1.0
1,238,056	-				+0.3
1,238,056	-				-0.3
1,238,056	-				+1.5
1,238,065	+				-0.5
1,238,078	-				-0.4
1,238,217	+		PFLU_RS30410	0.59	+0.3
1,238,217	+		PFLU_RS30410	0.59	+0.1
1,238,217	+		PFLU_RS30410	0.59	-0.4
1,238,217	+		PFLU_RS30410	0.59	-0.7
1,238,217	+		PFLU_RS30410	0.59	+0.0
1,238,217	+		PFLU_RS30410	0.59	-0.1
1,238,217	+		PFLU_RS30410	0.59	-0.3
1,238,217	+		PFLU_RS30410	0.59	+0.1
1,238,217	+		PFLU_RS30410	0.59	+0.2
1,238,217	+		PFLU_RS30410	0.59	+0.1
1,238,217	+		PFLU_RS30410	0.59	+0.3
1,238,217	+		PFLU_RS30410	0.59	-0.5
1,238,217	+		PFLU_RS30410	0.59	-1.1
1,238,217	+		PFLU_RS30410	0.59	+1.2
1,238,217	+		PFLU_RS30410	0.59	+1.3
1,238,217	+		PFLU_RS30410	0.59	-1.7
1,238,217	+		PFLU_RS30410	0.59	-2.2
1,238,217	+		PFLU_RS30410	0.59	+0.3
1,238,217	+		PFLU_RS30410	0.59	-0.6
1,238,217	+		PFLU_RS30410	0.59	-1.0
1,238,217	+		PFLU_RS30410	0.59	+0.6
1,238,217	+		PFLU_RS30410	0.59	+1.4
1,238,217	+		PFLU_RS30410	0.59	-0.2
1,238,217	+		PFLU_RS30410	0.59	-0.4
1,238,217	+		PFLU_RS30410	0.59	+1.1
1,238,217	+		PFLU_RS30410	0.59	+0.4
1,238,217	+		PFLU_RS30410	0.59	-1.0
1,238,218	-		PFLU_RS30410	0.60	+1.3
1,238,218	-		PFLU_RS30410	0.60	+0.5
1,238,218	-		PFLU_RS30410	0.60	+1.6
1,238,218	-		PFLU_RS30410	0.60	+0.2
1,238,218	-		PFLU_RS30410	0.60	+0.4
1,238,218	-		PFLU_RS30410	0.60	-0.1
1,238,218	-		PFLU_RS30410	0.60	-0.0
1,238,218	-		PFLU_RS30410	0.60	+0.9
1,238,218	-		PFLU_RS30410	0.60	+0.9
1,238,218	-		PFLU_RS30410	0.60	-1.5
1,238,218	-		PFLU_RS30410	0.60	+0.9
1,238,218	-		PFLU_RS30410	0.60	-0.4
1,238,218	-		PFLU_RS30410	0.60	-0.1
1,238,218	-		PFLU_RS30410	0.60	+0.8
1,238,218	-		PFLU_RS30410	0.60	-0.4
1,238,218	-		PFLU_RS30410	0.60	-0.1
1,238,218	-		PFLU_RS30410	0.60	-3.1
1,238,218	-		PFLU_RS30410	0.60	+0.2
1,238,218	-		PFLU_RS30410	0.60	+1.3
1,238,218	-		PFLU_RS30410	0.60	+0.8
1,238,218	-		PFLU_RS30410	0.60	-0.6
1,238,218	-		PFLU_RS30410	0.60	-1.4
1,238,218	-		PFLU_RS30410	0.60	+2.6
1,238,218	-		PFLU_RS30410	0.60	-1.6
1,238,219	+		PFLU_RS30410	0.60	-0.7
1,238,219	+		PFLU_RS30410	0.60	+0.4
1,238,219	+		PFLU_RS30410	0.60	+0.9
1,238,219	+		PFLU_RS30410	0.60	-1.0
1,238,219	+		PFLU_RS30410	0.60	+0.3
1,238,219	+		PFLU_RS30410	0.60	-1.3
1,238,219	+		PFLU_RS30410	0.60	+1.2
1,238,219	+		PFLU_RS30410	0.60	-1.4
1,238,219	+		PFLU_RS30410	0.60	+0.2
1,238,219	+		PFLU_RS30410	0.60	+0.2
1,238,219	+		PFLU_RS30410	0.60	-0.1
1,238,219	+		PFLU_RS30410	0.60	-1.3
1,238,220	-		PFLU_RS30410	0.61	+4.6
1,238,220	-		PFLU_RS30410	0.61	-1.5
1,238,220	-		PFLU_RS30410	0.61	-0.1
1,238,220	-		PFLU_RS30410	0.61	-0.2
1,238,220	-		PFLU_RS30410	0.61	-1.2
1,238,247	+		PFLU_RS30410	0.70	+0.1
1,238,248	-		PFLU_RS30410	0.71	-0.8
1,238,248	-		PFLU_RS30410	0.71	+0.9
1,238,248	-		PFLU_RS30410	0.71	+1.6
1,238,248	-		PFLU_RS30410	0.71	+1.0
1,238,248	-		PFLU_RS30410	0.71	+1.0
1,238,248	-		PFLU_RS30410	0.71	+0.7
1,238,248	-		PFLU_RS30410	0.71	-0.5
1,238,321	+				+0.7
1,238,321	+				-0.6
1,238,608	+		PFLU_RS05500	0.88	-1.7
1,238,609	-		PFLU_RS05500	0.89	-1.2
1,238,609	-		PFLU_RS05500	0.89	-0.3
1,238,609	-		PFLU_RS05500	0.89	-0.6
1,238,649	+				+0.6
1,238,649	+				-0.9
1,238,649	+				+0.3
1,238,650	-				+0.5
1,238,661	+				-0.7
1,238,661	+				-1.0
1,238,677	-				+1.8
1,238,688	+				-0.5
1,238,688	+				+0.8
1,238,716	-				+0.6
1,238,725	+				+1.6
1,238,725	+				-1.0
1,238,725	+				+2.0
1,238,725	+				+0.8
1,238,725	+				-0.0
1,238,726	-				-0.6
1,238,726	-				-0.4
1,238,726	-				-1.4
1,238,726	-				+1.1
1,238,727	+				-0.2
1,238,727	+				+0.7
1,238,728	-				-0.1
1,238,728	-				+0.6
1,238,728	-				-0.1
1,238,837	+				-0.6
1,238,886	+		PFLU_RS05505	0.11	-2.6
1,238,925	+		PFLU_RS05505	0.14	-1.0
1,238,926	-		PFLU_RS05505	0.14	-0.2
1,238,961	+		PFLU_RS05505	0.16	+0.0
1,238,962	-		PFLU_RS05505	0.17	-0.1
1,238,992	-		PFLU_RS05505	0.19	-0.4
1,239,098	+		PFLU_RS05505	0.26	-0.0
1,239,098	+		PFLU_RS05505	0.26	-1.2
1,239,098	+		PFLU_RS05505	0.26	-1.4
1,239,098	+		PFLU_RS05505	0.26	+1.2
1,239,098	+		PFLU_RS05505	0.26	+0.3
1,239,098	+		PFLU_RS05505	0.26	+0.1
1,239,098	+		PFLU_RS05505	0.26	+0.3
1,239,099	-		PFLU_RS05505	0.26	-1.0
1,239,099	-		PFLU_RS05505	0.26	+0.9
1,239,099	-		PFLU_RS05505	0.26	-0.4
1,239,099	-		PFLU_RS05505	0.26	-0.2
1,239,099	-		PFLU_RS05505	0.26	-0.0
1,239,099	-		PFLU_RS05505	0.26	+0.7
1,239,099	-		PFLU_RS05505	0.26	+1.0
1,239,122	+		PFLU_RS05505	0.28	+1.2
1,239,122	+		PFLU_RS05505	0.28	+0.7
1,239,122	+		PFLU_RS05505	0.28	-0.0
1,239,123	-		PFLU_RS05505	0.28	-0.0
1,239,123	-		PFLU_RS05505	0.28	-3.0
1,239,123	-		PFLU_RS05505	0.28	+1.4
1,239,123	-		PFLU_RS05505	0.28	-0.2
1,239,384	-		PFLU_RS05505	0.47	+0.2
1,239,416	+		PFLU_RS05505	0.49	+0.9
1,239,416	+		PFLU_RS05505	0.49	+0.5
1,239,416	+		PFLU_RS05505	0.49	-0.6
1,239,416	+		PFLU_RS05505	0.49	-0.2
1,239,416	+		PFLU_RS05505	0.49	+0.1
1,239,416	+		PFLU_RS05505	0.49	-1.2
1,239,416	+		PFLU_RS05505	0.49	+1.0
1,239,417	-		PFLU_RS05505	0.49	-0.0
1,239,417	-		PFLU_RS05505	0.49	+2.6
1,239,417	-		PFLU_RS05505	0.49	+0.6
1,239,417	-		PFLU_RS05505	0.49	-0.0
1,239,417	-		PFLU_RS05505	0.49	+0.6
1,239,417	-		PFLU_RS05505	0.49	-0.9
1,239,417	-		PFLU_RS05505	0.49	-0.3
1,239,447	+		PFLU_RS05505	0.52	+1.8
1,239,448	-		PFLU_RS05505	0.52	+3.0
1,239,448	-		PFLU_RS05505	0.52	-0.1
1,239,448	-		PFLU_RS05505	0.52	-0.4
1,239,448	-		PFLU_RS05505	0.52	+0.3