Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS03445

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS03440 and PFLU_RS03445 overlap by 4 nucleotidesPFLU_RS03445 and PFLU_RS03450 are separated by 41 nucleotides PFLU_RS03440: PFLU_RS03440 - ImmA/IrrE family metallo-endopeptidase, at 792,321 to 793,457 _RS03440 PFLU_RS03445: PFLU_RS03445 - DUF4411 family protein, at 793,454 to 793,951 _RS03445 PFLU_RS03450: PFLU_RS03450 - gluconate transporter, at 793,993 to 795,363 _RS03450 Position (kb) 793 794Strain fitness (log2 ratio) -2 -1 0 1 2 3at 792.580 kb on + strand, within PFLU_RS03440at 792.580 kb on + strand, within PFLU_RS03440at 792.580 kb on + strand, within PFLU_RS03440at 792.581 kb on - strand, within PFLU_RS03440at 792.581 kb on - strand, within PFLU_RS03440at 792.619 kb on + strand, within PFLU_RS03440at 792.619 kb on + strand, within PFLU_RS03440at 792.619 kb on + strand, within PFLU_RS03440at 792.619 kb on + strand, within PFLU_RS03440at 792.620 kb on - strand, within PFLU_RS03440at 792.620 kb on - strand, within PFLU_RS03440at 792.620 kb on - strand, within PFLU_RS03440at 792.620 kb on - strand, within PFLU_RS03440at 792.648 kb on + strand, within PFLU_RS03440at 792.649 kb on - strand, within PFLU_RS03440at 792.649 kb on - strand, within PFLU_RS03440at 792.649 kb on - strand, within PFLU_RS03440at 792.657 kb on + strand, within PFLU_RS03440at 792.658 kb on - strand, within PFLU_RS03440at 792.741 kb on - strand, within PFLU_RS03440at 792.751 kb on + strand, within PFLU_RS03440at 792.752 kb on - strand, within PFLU_RS03440at 792.779 kb on + strand, within PFLU_RS03440at 792.786 kb on + strand, within PFLU_RS03440at 792.787 kb on - strand, within PFLU_RS03440at 792.787 kb on - strand, within PFLU_RS03440at 792.787 kb on - strand, within PFLU_RS03440at 792.787 kb on - strand, within PFLU_RS03440at 792.795 kb on + strand, within PFLU_RS03440at 792.795 kb on + strand, within PFLU_RS03440at 792.796 kb on - strand, within PFLU_RS03440at 792.884 kb on + strand, within PFLU_RS03440at 792.885 kb on - strand, within PFLU_RS03440at 792.885 kb on - strand, within PFLU_RS03440at 792.978 kb on - strand, within PFLU_RS03440at 793.043 kb on + strand, within PFLU_RS03440at 793.043 kb on + strand, within PFLU_RS03440at 793.043 kb on + strand, within PFLU_RS03440at 793.044 kb on - strand, within PFLU_RS03440at 793.044 kb on - strand, within PFLU_RS03440at 793.044 kb on - strand, within PFLU_RS03440at 793.044 kb on - strand, within PFLU_RS03440at 793.070 kb on + strand, within PFLU_RS03440at 793.239 kb on + strand, within PFLU_RS03440at 793.240 kb on - strand, within PFLU_RS03440at 793.249 kb on - strand, within PFLU_RS03440at 793.249 kb on - strand, within PFLU_RS03440at 793.249 kb on - strand, within PFLU_RS03440at 793.251 kb on + strand, within PFLU_RS03440at 793.252 kb on - strand, within PFLU_RS03440at 793.280 kb on + strand, within PFLU_RS03440at 793.281 kb on - strand, within PFLU_RS03440at 793.281 kb on - strand, within PFLU_RS03440at 793.281 kb on - strand, within PFLU_RS03440at 793.302 kb on + strand, within PFLU_RS03440at 793.303 kb on - strand, within PFLU_RS03440at 793.303 kb on - strand, within PFLU_RS03440at 793.305 kb on + strand, within PFLU_RS03440at 793.305 kb on + strand, within PFLU_RS03440at 793.305 kb on + strand, within PFLU_RS03440at 793.464 kb on + strandat 793.464 kb on + strandat 793.464 kb on + strandat 793.464 kb on + strandat 793.464 kb on + strandat 793.464 kb on + strandat 793.465 kb on - strandat 793.465 kb on - strandat 793.465 kb on - strandat 793.465 kb on - strandat 793.465 kb on - strandat 793.465 kb on - strandat 793.465 kb on - strandat 793.465 kb on - strandat 793.502 kb on + strandat 793.505 kb on + strand, within PFLU_RS03445at 793.506 kb on - strand, within PFLU_RS03445at 793.506 kb on - strand, within PFLU_RS03445at 793.530 kb on - strand, within PFLU_RS03445at 793.576 kb on + strand, within PFLU_RS03445at 793.588 kb on - strand, within PFLU_RS03445at 793.599 kb on + strand, within PFLU_RS03445at 793.599 kb on + strand, within PFLU_RS03445at 793.639 kb on + strand, within PFLU_RS03445at 793.639 kb on + strand, within PFLU_RS03445at 793.639 kb on + strand, within PFLU_RS03445at 793.639 kb on + strand, within PFLU_RS03445at 793.640 kb on - strand, within PFLU_RS03445at 793.640 kb on - strand, within PFLU_RS03445at 793.640 kb on - strand, within PFLU_RS03445at 793.643 kb on - strand, within PFLU_RS03445at 793.643 kb on - strand, within PFLU_RS03445at 793.643 kb on - strand, within PFLU_RS03445at 793.675 kb on + strand, within PFLU_RS03445at 793.676 kb on - strand, within PFLU_RS03445at 793.676 kb on - strand, within PFLU_RS03445at 793.829 kb on + strand, within PFLU_RS03445at 793.829 kb on + strand, within PFLU_RS03445at 793.829 kb on + strand, within PFLU_RS03445at 793.829 kb on + strand, within PFLU_RS03445at 793.829 kb on + strand, within PFLU_RS03445at 793.829 kb on + strand, within PFLU_RS03445at 793.830 kb on - strand, within PFLU_RS03445at 793.830 kb on - strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.892 kb on + strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.893 kb on - strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.900 kb on + strand, within PFLU_RS03445at 793.901 kb on - strand, within PFLU_RS03445at 793.901 kb on - strand, within PFLU_RS03445at 793.901 kb on - strand, within PFLU_RS03445at 793.901 kb on - strand, within PFLU_RS03445at 793.901 kb on - strand, within PFLU_RS03445at 793.901 kb on - strand, within PFLU_RS03445at 793.983 kb on + strandat 793.983 kb on + strandat 793.983 kb on + strandat 793.983 kb on + strandat 793.984 kb on - strandat 793.984 kb on - strandat 793.984 kb on - strandat 793.984 kb on - strandat 793.984 kb on - strandat 793.988 kb on + strandat 794.022 kb on + strandat 794.023 kb on - strandat 794.102 kb on + strandat 794.102 kb on + strandat 794.103 kb on - strandat 794.103 kb on - strandat 794.310 kb on - strand, within PFLU_RS03450

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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792,580 + PFLU_RS03440 0.23 -1.8
792,580 + PFLU_RS03440 0.23 +1.1
792,580 + PFLU_RS03440 0.23 -0.6
792,581 - PFLU_RS03440 0.23 -0.7
792,581 - PFLU_RS03440 0.23 +0.6
792,619 + PFLU_RS03440 0.26 +0.5
792,619 + PFLU_RS03440 0.26 +0.8
792,619 + PFLU_RS03440 0.26 -0.6
792,619 + PFLU_RS03440 0.26 -2.1
792,620 - PFLU_RS03440 0.26 +2.9
792,620 - PFLU_RS03440 0.26 +0.3
792,620 - PFLU_RS03440 0.26 +0.6
792,620 - PFLU_RS03440 0.26 +1.1
792,648 + PFLU_RS03440 0.29 -0.1
792,649 - PFLU_RS03440 0.29 -2.1
792,649 - PFLU_RS03440 0.29 -0.9
792,649 - PFLU_RS03440 0.29 -0.7
792,657 + PFLU_RS03440 0.30 +0.8
792,658 - PFLU_RS03440 0.30 -1.0
792,741 - PFLU_RS03440 0.37 +0.4
792,751 + PFLU_RS03440 0.38 +0.8
792,752 - PFLU_RS03440 0.38 -0.0
792,779 + PFLU_RS03440 0.40 +0.4
792,786 + PFLU_RS03440 0.41 -0.3
792,787 - PFLU_RS03440 0.41 +1.0
792,787 - PFLU_RS03440 0.41 +0.8
792,787 - PFLU_RS03440 0.41 +0.2
792,787 - PFLU_RS03440 0.41 +1.6
792,795 + PFLU_RS03440 0.42 +0.1
792,795 + PFLU_RS03440 0.42 -0.8
792,796 - PFLU_RS03440 0.42 +1.1
792,884 + PFLU_RS03440 0.50 -0.1
792,885 - PFLU_RS03440 0.50 -0.6
792,885 - PFLU_RS03440 0.50 -0.1
792,978 - PFLU_RS03440 0.58 -0.7
793,043 + PFLU_RS03440 0.64 +0.1
793,043 + PFLU_RS03440 0.64 +0.2
793,043 + PFLU_RS03440 0.64 +0.2
793,044 - PFLU_RS03440 0.64 +0.7
793,044 - PFLU_RS03440 0.64 +0.4
793,044 - PFLU_RS03440 0.64 -1.2
793,044 - PFLU_RS03440 0.64 +0.4
793,070 + PFLU_RS03440 0.66 +0.3
793,239 + PFLU_RS03440 0.81 -0.5
793,240 - PFLU_RS03440 0.81 -0.7
793,249 - PFLU_RS03440 0.82 +0.6
793,249 - PFLU_RS03440 0.82 -0.2
793,249 - PFLU_RS03440 0.82 +0.6
793,251 + PFLU_RS03440 0.82 -1.9
793,252 - PFLU_RS03440 0.82 +0.2
793,280 + PFLU_RS03440 0.84 -0.6
793,281 - PFLU_RS03440 0.84 +1.1
793,281 - PFLU_RS03440 0.84 -0.1
793,281 - PFLU_RS03440 0.84 -1.5
793,302 + PFLU_RS03440 0.86 -0.1
793,303 - PFLU_RS03440 0.86 -0.2
793,303 - PFLU_RS03440 0.86 -0.2
793,305 + PFLU_RS03440 0.87 -0.1
793,305 + PFLU_RS03440 0.87 +1.1
793,305 + PFLU_RS03440 0.87 -0.2
793,464 + +0.1
793,464 + +0.0
793,464 + +0.4
793,464 + +0.9
793,464 + -1.2
793,464 + +0.1
793,465 - +0.1
793,465 - -1.8
793,465 - -0.7
793,465 - +1.6
793,465 - -1.6
793,465 - +0.9
793,465 - +0.4
793,465 - +0.6
793,502 + +0.1
793,505 + PFLU_RS03445 0.10 +1.6
793,506 - PFLU_RS03445 0.10 -0.2
793,506 - PFLU_RS03445 0.10 +1.6
793,530 - PFLU_RS03445 0.15 +1.8
793,576 + PFLU_RS03445 0.24 -0.1
793,588 - PFLU_RS03445 0.27 +0.2
793,599 + PFLU_RS03445 0.29 +0.2
793,599 + PFLU_RS03445 0.29 +0.4
793,639 + PFLU_RS03445 0.37 +0.6
793,639 + PFLU_RS03445 0.37 +0.4
793,639 + PFLU_RS03445 0.37 +0.7
793,639 + PFLU_RS03445 0.37 +0.8
793,640 - PFLU_RS03445 0.37 +0.7
793,640 - PFLU_RS03445 0.37 +0.7
793,640 - PFLU_RS03445 0.37 -1.1
793,643 - PFLU_RS03445 0.38 +0.5
793,643 - PFLU_RS03445 0.38 -1.9
793,643 - PFLU_RS03445 0.38 +1.0
793,675 + PFLU_RS03445 0.44 +1.2
793,676 - PFLU_RS03445 0.45 -1.2
793,676 - PFLU_RS03445 0.45 -1.6
793,829 + PFLU_RS03445 0.75 +0.5
793,829 + PFLU_RS03445 0.75 -1.6
793,829 + PFLU_RS03445 0.75 -0.0
793,829 + PFLU_RS03445 0.75 -0.7
793,829 + PFLU_RS03445 0.75 -0.3
793,829 + PFLU_RS03445 0.75 +1.1
793,830 - PFLU_RS03445 0.76 +1.6
793,830 - PFLU_RS03445 0.76 +0.1
793,892 + PFLU_RS03445 0.88 -0.6
793,892 + PFLU_RS03445 0.88 -0.3
793,892 + PFLU_RS03445 0.88 -0.6
793,892 + PFLU_RS03445 0.88 +0.5
793,892 + PFLU_RS03445 0.88 -1.6
793,892 + PFLU_RS03445 0.88 -0.3
793,892 + PFLU_RS03445 0.88 -0.9
793,892 + PFLU_RS03445 0.88 -0.7
793,892 + PFLU_RS03445 0.88 +1.3
793,892 + PFLU_RS03445 0.88 +2.0
793,892 + PFLU_RS03445 0.88 +0.1
793,892 + PFLU_RS03445 0.88 -1.2
793,892 + PFLU_RS03445 0.88 -0.7
793,892 + PFLU_RS03445 0.88 +1.0
793,893 - PFLU_RS03445 0.88 +0.0
793,893 - PFLU_RS03445 0.88 +0.2
793,893 - PFLU_RS03445 0.88 +0.8
793,893 - PFLU_RS03445 0.88 +0.4
793,893 - PFLU_RS03445 0.88 -0.3
793,893 - PFLU_RS03445 0.88 -0.3
793,893 - PFLU_RS03445 0.88 -0.8
793,893 - PFLU_RS03445 0.88 +1.1
793,893 - PFLU_RS03445 0.88 +0.1
793,893 - PFLU_RS03445 0.88 -0.6
793,893 - PFLU_RS03445 0.88 +0.7
793,893 - PFLU_RS03445 0.88 -1.9
793,893 - PFLU_RS03445 0.88 -0.9
793,893 - PFLU_RS03445 0.88 -0.7
793,900 + PFLU_RS03445 0.90 +0.1
793,900 + PFLU_RS03445 0.90 +1.3
793,900 + PFLU_RS03445 0.90 +0.6
793,900 + PFLU_RS03445 0.90 +1.6
793,900 + PFLU_RS03445 0.90 +0.7
793,900 + PFLU_RS03445 0.90 -2.2
793,900 + PFLU_RS03445 0.90 -1.5
793,900 + PFLU_RS03445 0.90 -1.6
793,900 + PFLU_RS03445 0.90 +0.7
793,900 + PFLU_RS03445 0.90 +0.1
793,900 + PFLU_RS03445 0.90 -0.9
793,901 - PFLU_RS03445 0.90 -2.0
793,901 - PFLU_RS03445 0.90 +0.7
793,901 - PFLU_RS03445 0.90 +0.1
793,901 - PFLU_RS03445 0.90 +0.3
793,901 - PFLU_RS03445 0.90 +0.6
793,901 - PFLU_RS03445 0.90 -0.1
793,983 + +2.5
793,983 + +0.8
793,983 + +0.6
793,983 + -0.4
793,984 - -0.5
793,984 - -0.0
793,984 - -0.2
793,984 - +0.2
793,984 - -1.2
793,988 + +1.4
794,022 + -0.0
794,023 - -1.2
794,102 + -0.2
794,102 + +0.0
794,103 - +0.7
794,103 - +0.4
794,310 - PFLU_RS03450 0.23 +1.1

Or see this region's nucleotide sequence