Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02050

Experiment: Trisodium citrate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02045 and PFLU_RS02050 are separated by 32 nucleotidesPFLU_RS02050 and PFLU_RS02055 are separated by 243 nucleotides PFLU_RS02045: PFLU_RS02045 - glutamate synthase large subunit, at 458,646 to 463,091 _RS02045 PFLU_RS02050: PFLU_RS02050 - NAD(P)-binding protein, at 463,124 to 464,542 _RS02050 PFLU_RS02055: PFLU_RS02055 - uroporphyrinogen decarboxylase, at 464,786 to 465,853 _RS02055 Position (kb) 463 464 465Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 462.354 kb on - strand, within PFLU_RS02045at 462.354 kb on - strand, within PFLU_RS02045at 462.354 kb on - strand, within PFLU_RS02045at 462.354 kb on - strand, within PFLU_RS02045at 462.510 kb on + strand, within PFLU_RS02045at 462.510 kb on + strand, within PFLU_RS02045at 462.510 kb on + strand, within PFLU_RS02045at 462.510 kb on + strand, within PFLU_RS02045at 462.510 kb on + strand, within PFLU_RS02045at 462.510 kb on + strand, within PFLU_RS02045at 462.510 kb on + strand, within PFLU_RS02045at 462.510 kb on + strand, within PFLU_RS02045at 462.511 kb on - strand, within PFLU_RS02045at 462.511 kb on - strand, within PFLU_RS02045at 462.511 kb on - strand, within PFLU_RS02045at 462.534 kb on + strand, within PFLU_RS02045at 462.534 kb on + strand, within PFLU_RS02045at 462.534 kb on + strand, within PFLU_RS02045at 462.534 kb on + strand, within PFLU_RS02045at 462.534 kb on + strand, within PFLU_RS02045at 462.535 kb on - strand, within PFLU_RS02045at 462.535 kb on - strand, within PFLU_RS02045at 462.535 kb on - strand, within PFLU_RS02045at 462.594 kb on + strand, within PFLU_RS02045at 462.594 kb on + strand, within PFLU_RS02045at 462.594 kb on + strand, within PFLU_RS02045at 462.595 kb on - strand, within PFLU_RS02045at 462.595 kb on - strand, within PFLU_RS02045at 462.595 kb on - strand, within PFLU_RS02045at 462.595 kb on - strand, within PFLU_RS02045at 462.636 kb on + strand, within PFLU_RS02045at 462.636 kb on + strand, within PFLU_RS02045at 462.636 kb on + strand, within PFLU_RS02045at 462.637 kb on - strand, within PFLU_RS02045at 462.698 kb on + strandat 462.698 kb on + strandat 462.699 kb on - strandat 462.750 kb on + strandat 462.750 kb on + strandat 462.750 kb on + strandat 462.750 kb on + strandat 462.750 kb on + strandat 462.750 kb on + strandat 462.750 kb on + strandat 462.751 kb on - strandat 462.751 kb on - strandat 462.751 kb on - strandat 462.793 kb on - strandat 462.828 kb on + strandat 462.829 kb on - strandat 462.951 kb on + strandat 462.951 kb on + strandat 463.008 kb on + strandat 463.009 kb on - strandat 463.009 kb on - strandat 463.093 kb on - strandat 463.120 kb on + strandat 463.120 kb on + strandat 463.120 kb on + strandat 463.120 kb on + strandat 463.120 kb on + strandat 463.120 kb on + strandat 463.120 kb on + strandat 463.121 kb on - strandat 463.121 kb on - strandat 463.121 kb on - strandat 463.121 kb on - strandat 463.121 kb on - strandat 463.141 kb on + strandat 463.226 kb on + strandat 463.226 kb on + strandat 463.226 kb on + strandat 463.226 kb on + strandat 463.226 kb on + strandat 463.226 kb on + strandat 463.226 kb on + strandat 463.226 kb on + strandat 463.227 kb on - strandat 463.227 kb on - strandat 463.227 kb on - strandat 463.227 kb on - strandat 463.227 kb on - strandat 463.227 kb on - strandat 463.505 kb on + strand, within PFLU_RS02050at 463.505 kb on + strand, within PFLU_RS02050at 463.505 kb on + strand, within PFLU_RS02050at 463.505 kb on + strand, within PFLU_RS02050at 463.505 kb on + strand, within PFLU_RS02050at 463.505 kb on + strand, within PFLU_RS02050at 463.505 kb on + strand, within PFLU_RS02050at 463.505 kb on + strand, within PFLU_RS02050at 463.505 kb on + strand, within PFLU_RS02050at 463.505 kb on + strand, within PFLU_RS02050at 463.505 kb on + strand, within PFLU_RS02050at 463.506 kb on - strand, within PFLU_RS02050at 463.506 kb on - strand, within PFLU_RS02050at 463.506 kb on - strand, within PFLU_RS02050at 463.506 kb on - strand, within PFLU_RS02050at 463.506 kb on - strand, within PFLU_RS02050at 463.506 kb on - strand, within PFLU_RS02050at 463.506 kb on - strand, within PFLU_RS02050at 463.506 kb on - strand, within PFLU_RS02050at 463.506 kb on - strand, within PFLU_RS02050at 463.506 kb on - strand, within PFLU_RS02050at 463.623 kb on + strand, within PFLU_RS02050at 463.624 kb on - strand, within PFLU_RS02050at 463.826 kb on + strand, within PFLU_RS02050at 463.826 kb on + strand, within PFLU_RS02050at 463.826 kb on + strand, within PFLU_RS02050at 463.826 kb on + strand, within PFLU_RS02050at 463.827 kb on - strand, within PFLU_RS02050at 463.827 kb on - strand, within PFLU_RS02050at 463.827 kb on - strand, within PFLU_RS02050at 463.827 kb on - strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.856 kb on + strand, within PFLU_RS02050at 463.857 kb on - strand, within PFLU_RS02050at 463.857 kb on - strand, within PFLU_RS02050at 463.857 kb on - strand, within PFLU_RS02050at 463.857 kb on - strand, within PFLU_RS02050at 463.857 kb on - strand, within PFLU_RS02050at 463.857 kb on - strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.862 kb on + strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.863 kb on - strand, within PFLU_RS02050at 463.904 kb on + strand, within PFLU_RS02050at 463.904 kb on + strand, within PFLU_RS02050at 463.904 kb on + strand, within PFLU_RS02050at 463.905 kb on - strand, within PFLU_RS02050at 463.905 kb on - strand, within PFLU_RS02050at 463.905 kb on - strand, within PFLU_RS02050at 464.041 kb on + strand, within PFLU_RS02050at 464.041 kb on + strand, within PFLU_RS02050at 464.041 kb on + strand, within PFLU_RS02050at 464.041 kb on + strand, within PFLU_RS02050at 464.041 kb on + strand, within PFLU_RS02050at 464.042 kb on - strand, within PFLU_RS02050at 464.042 kb on - strand, within PFLU_RS02050at 464.411 kb on + strandat 464.411 kb on + strandat 464.412 kb on - strandat 464.412 kb on - strandat 464.412 kb on - strandat 464.528 kb on + strandat 464.529 kb on - strandat 464.529 kb on - strandat 464.604 kb on + strandat 464.604 kb on + strandat 464.604 kb on + strandat 464.604 kb on + strandat 464.604 kb on + strandat 464.604 kb on + strandat 464.604 kb on + strandat 464.605 kb on - strandat 464.605 kb on - strandat 464.605 kb on - strandat 464.617 kb on + strandat 464.617 kb on + strandat 464.618 kb on - strandat 464.618 kb on - strandat 464.685 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C); with MOPS
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462,354 - PFLU_RS02045 0.83 -0.7
462,354 - PFLU_RS02045 0.83 -0.5
462,354 - PFLU_RS02045 0.83 -3.1
462,354 - PFLU_RS02045 0.83 -1.2
462,510 + PFLU_RS02045 0.87 +0.6
462,510 + PFLU_RS02045 0.87 -0.7
462,510 + PFLU_RS02045 0.87 +0.3
462,510 + PFLU_RS02045 0.87 -1.2
462,510 + PFLU_RS02045 0.87 -0.4
462,510 + PFLU_RS02045 0.87 -2.0
462,510 + PFLU_RS02045 0.87 +0.7
462,510 + PFLU_RS02045 0.87 -0.5
462,511 - PFLU_RS02045 0.87 -1.4
462,511 - PFLU_RS02045 0.87 -0.8
462,511 - PFLU_RS02045 0.87 -0.4
462,534 + PFLU_RS02045 0.87 +0.1
462,534 + PFLU_RS02045 0.87 -1.1
462,534 + PFLU_RS02045 0.87 -0.7
462,534 + PFLU_RS02045 0.87 +0.2
462,534 + PFLU_RS02045 0.87 -1.7
462,535 - PFLU_RS02045 0.87 -1.3
462,535 - PFLU_RS02045 0.87 +1.5
462,535 - PFLU_RS02045 0.87 -0.6
462,594 + PFLU_RS02045 0.89 -0.7
462,594 + PFLU_RS02045 0.89 -0.7
462,594 + PFLU_RS02045 0.89 -0.9
462,595 - PFLU_RS02045 0.89 -2.8
462,595 - PFLU_RS02045 0.89 -2.6
462,595 - PFLU_RS02045 0.89 -1.5
462,595 - PFLU_RS02045 0.89 -0.4
462,636 + PFLU_RS02045 0.90 -1.2
462,636 + PFLU_RS02045 0.90 -0.4
462,636 + PFLU_RS02045 0.90 -1.3
462,637 - PFLU_RS02045 0.90 -0.2
462,698 + -1.5
462,698 + -1.4
462,699 - -0.0
462,750 + -2.6
462,750 + +0.5
462,750 + +1.3
462,750 + +0.3
462,750 + -2.0
462,750 + +0.7
462,750 + +0.5
462,751 - +0.6
462,751 - +1.1
462,751 - -0.9
462,793 - -1.5
462,828 + -0.5
462,829 - +0.8
462,951 + -1.2
462,951 + -0.5
463,008 + -0.3
463,009 - -1.3
463,009 - +0.2
463,093 - +0.9
463,120 + -1.4
463,120 + -0.8
463,120 + +0.3
463,120 + -0.7
463,120 + -1.3
463,120 + -1.6
463,120 + -1.9
463,121 - -0.9
463,121 - -0.8
463,121 - -1.5
463,121 - -0.0
463,121 - -1.6
463,141 + -0.2
463,226 + +0.4
463,226 + -1.1
463,226 + -1.2
463,226 + -0.7
463,226 + -1.4
463,226 + +0.6
463,226 + -1.9
463,226 + +0.3
463,227 - -1.4
463,227 - -1.9
463,227 - -0.9
463,227 - +0.3
463,227 - +0.5
463,227 - +0.3
463,505 + PFLU_RS02050 0.27 -0.3
463,505 + PFLU_RS02050 0.27 -0.6
463,505 + PFLU_RS02050 0.27 -1.2
463,505 + PFLU_RS02050 0.27 -2.5
463,505 + PFLU_RS02050 0.27 -3.3
463,505 + PFLU_RS02050 0.27 -0.2
463,505 + PFLU_RS02050 0.27 -0.3
463,505 + PFLU_RS02050 0.27 +0.5
463,505 + PFLU_RS02050 0.27 -0.6
463,505 + PFLU_RS02050 0.27 -2.4
463,505 + PFLU_RS02050 0.27 -2.4
463,506 - PFLU_RS02050 0.27 -0.7
463,506 - PFLU_RS02050 0.27 -0.4
463,506 - PFLU_RS02050 0.27 -2.0
463,506 - PFLU_RS02050 0.27 -1.1
463,506 - PFLU_RS02050 0.27 -2.4
463,506 - PFLU_RS02050 0.27 -1.3
463,506 - PFLU_RS02050 0.27 -1.3
463,506 - PFLU_RS02050 0.27 -2.8
463,506 - PFLU_RS02050 0.27 -2.0
463,506 - PFLU_RS02050 0.27 -0.0
463,623 + PFLU_RS02050 0.35 -3.0
463,624 - PFLU_RS02050 0.35 -2.4
463,826 + PFLU_RS02050 0.49 -1.0
463,826 + PFLU_RS02050 0.49 -1.2
463,826 + PFLU_RS02050 0.49 +0.4
463,826 + PFLU_RS02050 0.49 +1.3
463,827 - PFLU_RS02050 0.50 -2.3
463,827 - PFLU_RS02050 0.50 -1.1
463,827 - PFLU_RS02050 0.50 -2.9
463,827 - PFLU_RS02050 0.50 -0.4
463,856 + PFLU_RS02050 0.52 +0.4
463,856 + PFLU_RS02050 0.52 -0.2
463,856 + PFLU_RS02050 0.52 -0.4
463,856 + PFLU_RS02050 0.52 -1.7
463,856 + PFLU_RS02050 0.52 -1.0
463,856 + PFLU_RS02050 0.52 -1.9
463,856 + PFLU_RS02050 0.52 -2.7
463,856 + PFLU_RS02050 0.52 +0.0
463,856 + PFLU_RS02050 0.52 -0.2
463,856 + PFLU_RS02050 0.52 -1.2
463,856 + PFLU_RS02050 0.52 -2.0
463,856 + PFLU_RS02050 0.52 -1.4
463,856 + PFLU_RS02050 0.52 -2.5
463,857 - PFLU_RS02050 0.52 -1.5
463,857 - PFLU_RS02050 0.52 -1.9
463,857 - PFLU_RS02050 0.52 -0.2
463,857 - PFLU_RS02050 0.52 +0.5
463,857 - PFLU_RS02050 0.52 -1.7
463,857 - PFLU_RS02050 0.52 +0.2
463,862 + PFLU_RS02050 0.52 -1.5
463,862 + PFLU_RS02050 0.52 +1.3
463,862 + PFLU_RS02050 0.52 -0.9
463,862 + PFLU_RS02050 0.52 -2.9
463,862 + PFLU_RS02050 0.52 -2.0
463,862 + PFLU_RS02050 0.52 +0.3
463,862 + PFLU_RS02050 0.52 -2.3
463,862 + PFLU_RS02050 0.52 +0.3
463,862 + PFLU_RS02050 0.52 -1.5
463,862 + PFLU_RS02050 0.52 +2.1
463,862 + PFLU_RS02050 0.52 -1.7
463,862 + PFLU_RS02050 0.52 -1.0
463,862 + PFLU_RS02050 0.52 -0.9
463,863 - PFLU_RS02050 0.52 -1.8
463,863 - PFLU_RS02050 0.52 -0.5
463,863 - PFLU_RS02050 0.52 +0.1
463,863 - PFLU_RS02050 0.52 -1.9
463,863 - PFLU_RS02050 0.52 -0.7
463,863 - PFLU_RS02050 0.52 -1.0
463,863 - PFLU_RS02050 0.52 -0.8
463,863 - PFLU_RS02050 0.52 -2.3
463,863 - PFLU_RS02050 0.52 -0.7
463,863 - PFLU_RS02050 0.52 -0.0
463,863 - PFLU_RS02050 0.52 -0.3
463,863 - PFLU_RS02050 0.52 +0.0
463,863 - PFLU_RS02050 0.52 -1.7
463,904 + PFLU_RS02050 0.55 +0.3
463,904 + PFLU_RS02050 0.55 -1.4
463,904 + PFLU_RS02050 0.55 -2.0
463,905 - PFLU_RS02050 0.55 -0.6
463,905 - PFLU_RS02050 0.55 -0.2
463,905 - PFLU_RS02050 0.55 -1.0
464,041 + PFLU_RS02050 0.65 -1.2
464,041 + PFLU_RS02050 0.65 +0.3
464,041 + PFLU_RS02050 0.65 +0.4
464,041 + PFLU_RS02050 0.65 -1.4
464,041 + PFLU_RS02050 0.65 +0.7
464,042 - PFLU_RS02050 0.65 -0.3
464,042 - PFLU_RS02050 0.65 -0.4
464,411 + -2.8
464,411 + -0.2
464,412 - -0.9
464,412 - -1.1
464,412 - -0.7
464,528 + -1.0
464,529 - +0.5
464,529 - -0.7
464,604 + -0.7
464,604 + -1.3
464,604 + -0.9
464,604 + +0.4
464,604 + -0.3
464,604 + +0.8
464,604 + +0.1
464,605 - -0.8
464,605 - -0.5
464,605 - +0.8
464,617 + +0.4
464,617 + -1.0
464,618 - +2.5
464,618 - +0.5
464,685 + -0.2

Or see this region's nucleotide sequence