Strain Fitness in Pseudomonas sp. S08-1 around OH686_23390

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_23385 and OH686_23390 are separated by 192 nucleotidesOH686_23390 and OH686_23395 are separated by 212 nucleotides OH686_23385: OH686_23385 - deoxyribodipyrimidine photolyase-related protein, at 4,737,224 to 4,738,765 _23385 OH686_23390: OH686_23390 - sensory box protein, putative, at 4,738,958 to 4,739,404 _23390 OH686_23395: OH686_23395 - hypothetical protein, at 4,739,617 to 4,740,546 _23395 Position (kb) 4738 4739 4740Strain fitness (log2 ratio) -2 -1 0 1 2at 4737.980 kb on + strand, within OH686_23385at 4737.981 kb on - strand, within OH686_23385at 4738.010 kb on + strand, within OH686_23385at 4738.010 kb on + strand, within OH686_23385at 4738.010 kb on + strand, within OH686_23385at 4738.011 kb on - strand, within OH686_23385at 4738.164 kb on - strand, within OH686_23385at 4738.164 kb on - strand, within OH686_23385at 4738.164 kb on - strand, within OH686_23385at 4738.164 kb on - strand, within OH686_23385at 4738.167 kb on + strand, within OH686_23385at 4738.167 kb on + strand, within OH686_23385at 4738.168 kb on - strand, within OH686_23385at 4738.178 kb on + strand, within OH686_23385at 4738.178 kb on + strand, within OH686_23385at 4738.178 kb on + strand, within OH686_23385at 4738.178 kb on + strand, within OH686_23385at 4738.178 kb on + strand, within OH686_23385at 4738.178 kb on + strand, within OH686_23385at 4738.179 kb on - strand, within OH686_23385at 4738.179 kb on - strand, within OH686_23385at 4738.200 kb on - strand, within OH686_23385at 4738.247 kb on + strand, within OH686_23385at 4738.247 kb on + strand, within OH686_23385at 4738.248 kb on - strand, within OH686_23385at 4738.248 kb on - strand, within OH686_23385at 4738.248 kb on - strand, within OH686_23385at 4738.248 kb on - strand, within OH686_23385at 4738.314 kb on - strand, within OH686_23385at 4738.314 kb on - strand, within OH686_23385at 4738.397 kb on + strand, within OH686_23385at 4738.398 kb on - strand, within OH686_23385at 4738.409 kb on + strand, within OH686_23385at 4738.409 kb on + strand, within OH686_23385at 4738.410 kb on - strand, within OH686_23385at 4738.478 kb on + strand, within OH686_23385at 4738.479 kb on - strand, within OH686_23385at 4738.497 kb on - strand, within OH686_23385at 4738.514 kb on + strand, within OH686_23385at 4738.514 kb on + strand, within OH686_23385at 4738.514 kb on + strand, within OH686_23385at 4738.514 kb on + strand, within OH686_23385at 4738.515 kb on - strand, within OH686_23385at 4738.605 kb on - strand, within OH686_23385at 4738.605 kb on - strand, within OH686_23385at 4738.605 kb on - strand, within OH686_23385at 4738.893 kb on + strandat 4738.893 kb on + strandat 4738.938 kb on - strandat 4739.036 kb on - strand, within OH686_23390at 4739.073 kb on + strand, within OH686_23390at 4739.074 kb on - strand, within OH686_23390at 4739.074 kb on - strand, within OH686_23390at 4739.074 kb on - strand, within OH686_23390at 4739.074 kb on - strand, within OH686_23390at 4739.097 kb on + strand, within OH686_23390at 4739.097 kb on + strand, within OH686_23390at 4739.097 kb on + strand, within OH686_23390at 4739.097 kb on + strand, within OH686_23390at 4739.098 kb on - strand, within OH686_23390at 4739.098 kb on - strand, within OH686_23390at 4739.098 kb on - strand, within OH686_23390at 4739.098 kb on - strand, within OH686_23390at 4739.098 kb on - strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.156 kb on + strand, within OH686_23390at 4739.157 kb on - strand, within OH686_23390at 4739.157 kb on - strand, within OH686_23390at 4739.157 kb on - strand, within OH686_23390at 4739.157 kb on - strand, within OH686_23390at 4739.157 kb on - strand, within OH686_23390at 4739.257 kb on - strand, within OH686_23390at 4739.257 kb on - strand, within OH686_23390at 4739.257 kb on - strand, within OH686_23390at 4739.310 kb on + strand, within OH686_23390at 4739.310 kb on + strand, within OH686_23390at 4739.310 kb on + strand, within OH686_23390at 4739.310 kb on + strand, within OH686_23390at 4739.310 kb on + strand, within OH686_23390at 4739.311 kb on - strand, within OH686_23390at 4739.311 kb on - strand, within OH686_23390at 4739.311 kb on - strand, within OH686_23390at 4739.311 kb on - strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.318 kb on + strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.319 kb on - strand, within OH686_23390at 4739.351 kb on + strand, within OH686_23390at 4739.351 kb on + strand, within OH686_23390at 4739.351 kb on + strand, within OH686_23390at 4739.352 kb on - strand, within OH686_23390at 4739.352 kb on - strand, within OH686_23390at 4739.352 kb on - strand, within OH686_23390at 4739.352 kb on - strand, within OH686_23390at 4739.414 kb on + strandat 4739.415 kb on - strandat 4739.444 kb on - strandat 4739.467 kb on - strandat 4739.560 kb on + strandat 4739.561 kb on - strandat 4739.579 kb on + strandat 4739.579 kb on + strandat 4739.579 kb on + strandat 4739.580 kb on - strandat 4739.670 kb on + strandat 4739.678 kb on + strandat 4739.678 kb on + strandat 4739.782 kb on - strand, within OH686_23395at 4739.878 kb on + strand, within OH686_23395at 4740.044 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.080 kb on + strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.081 kb on - strand, within OH686_23395at 4740.103 kb on + strand, within OH686_23395at 4740.103 kb on + strand, within OH686_23395at 4740.103 kb on + strand, within OH686_23395at 4740.103 kb on + strand, within OH686_23395at 4740.104 kb on - strand, within OH686_23395at 4740.104 kb on - strand, within OH686_23395at 4740.104 kb on - strand, within OH686_23395at 4740.104 kb on - strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.107 kb on + strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.108 kb on - strand, within OH686_23395at 4740.125 kb on - strand, within OH686_23395

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,737,980 + OH686_23385 0.49 +0.9
4,737,981 - OH686_23385 0.49 +1.4
4,738,010 + OH686_23385 0.51 -0.6
4,738,010 + OH686_23385 0.51 -0.4
4,738,010 + OH686_23385 0.51 -0.0
4,738,011 - OH686_23385 0.51 -1.3
4,738,164 - OH686_23385 0.61 +1.1
4,738,164 - OH686_23385 0.61 -0.0
4,738,164 - OH686_23385 0.61 +0.3
4,738,164 - OH686_23385 0.61 +0.1
4,738,167 + OH686_23385 0.61 +0.7
4,738,167 + OH686_23385 0.61 +0.3
4,738,168 - OH686_23385 0.61 -0.1
4,738,178 + OH686_23385 0.62 -0.4
4,738,178 + OH686_23385 0.62 -0.2
4,738,178 + OH686_23385 0.62 -0.4
4,738,178 + OH686_23385 0.62 -1.0
4,738,178 + OH686_23385 0.62 -0.1
4,738,178 + OH686_23385 0.62 -1.0
4,738,179 - OH686_23385 0.62 -0.7
4,738,179 - OH686_23385 0.62 -0.7
4,738,200 - OH686_23385 0.63 -0.2
4,738,247 + OH686_23385 0.66 -1.5
4,738,247 + OH686_23385 0.66 +0.2
4,738,248 - OH686_23385 0.66 +0.3
4,738,248 - OH686_23385 0.66 -0.3
4,738,248 - OH686_23385 0.66 -0.4
4,738,248 - OH686_23385 0.66 +0.1
4,738,314 - OH686_23385 0.71 +0.1
4,738,314 - OH686_23385 0.71 -0.9
4,738,397 + OH686_23385 0.76 +0.3
4,738,398 - OH686_23385 0.76 +0.5
4,738,409 + OH686_23385 0.77 +0.9
4,738,409 + OH686_23385 0.77 +0.3
4,738,410 - OH686_23385 0.77 +0.1
4,738,478 + OH686_23385 0.81 -0.0
4,738,479 - OH686_23385 0.81 +1.3
4,738,497 - OH686_23385 0.83 +0.9
4,738,514 + OH686_23385 0.84 +0.6
4,738,514 + OH686_23385 0.84 -0.5
4,738,514 + OH686_23385 0.84 +0.4
4,738,514 + OH686_23385 0.84 +0.4
4,738,515 - OH686_23385 0.84 -0.0
4,738,605 - OH686_23385 0.90 +0.4
4,738,605 - OH686_23385 0.90 +0.8
4,738,605 - OH686_23385 0.90 -0.6
4,738,893 + -0.4
4,738,893 + +1.5
4,738,938 - -0.3
4,739,036 - OH686_23390 0.17 -1.1
4,739,073 + OH686_23390 0.26 -0.0
4,739,074 - OH686_23390 0.26 +0.3
4,739,074 - OH686_23390 0.26 -0.3
4,739,074 - OH686_23390 0.26 +0.8
4,739,074 - OH686_23390 0.26 +0.0
4,739,097 + OH686_23390 0.31 +1.3
4,739,097 + OH686_23390 0.31 -0.6
4,739,097 + OH686_23390 0.31 -0.7
4,739,097 + OH686_23390 0.31 +0.3
4,739,098 - OH686_23390 0.31 -0.1
4,739,098 - OH686_23390 0.31 -0.2
4,739,098 - OH686_23390 0.31 +0.1
4,739,098 - OH686_23390 0.31 +1.0
4,739,098 - OH686_23390 0.31 -0.4
4,739,156 + OH686_23390 0.44 -0.9
4,739,156 + OH686_23390 0.44 +0.3
4,739,156 + OH686_23390 0.44 +0.2
4,739,156 + OH686_23390 0.44 -0.1
4,739,156 + OH686_23390 0.44 +0.2
4,739,156 + OH686_23390 0.44 -0.4
4,739,157 - OH686_23390 0.45 -0.9
4,739,157 - OH686_23390 0.45 +0.0
4,739,157 - OH686_23390 0.45 -0.5
4,739,157 - OH686_23390 0.45 -0.8
4,739,157 - OH686_23390 0.45 -0.9
4,739,257 - OH686_23390 0.67 -0.2
4,739,257 - OH686_23390 0.67 -0.4
4,739,257 - OH686_23390 0.67 -0.7
4,739,310 + OH686_23390 0.79 +0.3
4,739,310 + OH686_23390 0.79 +0.6
4,739,310 + OH686_23390 0.79 +1.3
4,739,310 + OH686_23390 0.79 -0.8
4,739,310 + OH686_23390 0.79 -0.3
4,739,311 - OH686_23390 0.79 +0.3
4,739,311 - OH686_23390 0.79 +0.1
4,739,311 - OH686_23390 0.79 -0.5
4,739,311 - OH686_23390 0.79 -0.7
4,739,318 + OH686_23390 0.81 +0.1
4,739,318 + OH686_23390 0.81 +0.7
4,739,318 + OH686_23390 0.81 -0.6
4,739,318 + OH686_23390 0.81 -0.2
4,739,318 + OH686_23390 0.81 +2.2
4,739,318 + OH686_23390 0.81 +0.2
4,739,318 + OH686_23390 0.81 -1.5
4,739,318 + OH686_23390 0.81 +0.7
4,739,319 - OH686_23390 0.81 +1.7
4,739,319 - OH686_23390 0.81 -0.1
4,739,319 - OH686_23390 0.81 +0.6
4,739,319 - OH686_23390 0.81 +0.1
4,739,319 - OH686_23390 0.81 -0.1
4,739,319 - OH686_23390 0.81 -0.7
4,739,319 - OH686_23390 0.81 -1.7
4,739,319 - OH686_23390 0.81 +0.2
4,739,319 - OH686_23390 0.81 -0.4
4,739,319 - OH686_23390 0.81 +0.2
4,739,319 - OH686_23390 0.81 -0.3
4,739,319 - OH686_23390 0.81 +0.1
4,739,351 + OH686_23390 0.88 +0.5
4,739,351 + OH686_23390 0.88 -0.1
4,739,351 + OH686_23390 0.88 -0.2
4,739,352 - OH686_23390 0.88 +0.6
4,739,352 - OH686_23390 0.88 +0.6
4,739,352 - OH686_23390 0.88 +1.1
4,739,352 - OH686_23390 0.88 +0.3
4,739,414 + +0.1
4,739,415 - -1.0
4,739,444 - +0.3
4,739,467 - -0.5
4,739,560 + -0.9
4,739,561 - -0.7
4,739,579 + -0.8
4,739,579 + -0.4
4,739,579 + -2.1
4,739,580 - +0.7
4,739,670 + +0.9
4,739,678 + -0.9
4,739,678 + -2.2
4,739,782 - OH686_23395 0.18 +0.3
4,739,878 + OH686_23395 0.28 -0.1
4,740,044 + OH686_23395 0.46 +0.6
4,740,080 + OH686_23395 0.50 +0.2
4,740,080 + OH686_23395 0.50 +0.6
4,740,080 + OH686_23395 0.50 -1.0
4,740,080 + OH686_23395 0.50 -0.7
4,740,080 + OH686_23395 0.50 -0.1
4,740,080 + OH686_23395 0.50 -0.2
4,740,080 + OH686_23395 0.50 -0.6
4,740,081 - OH686_23395 0.50 -0.7
4,740,081 - OH686_23395 0.50 -0.3
4,740,081 - OH686_23395 0.50 -0.2
4,740,081 - OH686_23395 0.50 -0.1
4,740,081 - OH686_23395 0.50 -0.1
4,740,081 - OH686_23395 0.50 -0.7
4,740,103 + OH686_23395 0.52 -0.9
4,740,103 + OH686_23395 0.52 -1.1
4,740,103 + OH686_23395 0.52 -0.4
4,740,103 + OH686_23395 0.52 +0.5
4,740,104 - OH686_23395 0.52 -2.1
4,740,104 - OH686_23395 0.52 -0.9
4,740,104 - OH686_23395 0.52 -0.3
4,740,104 - OH686_23395 0.52 -1.4
4,740,107 + OH686_23395 0.53 -0.6
4,740,107 + OH686_23395 0.53 -0.6
4,740,107 + OH686_23395 0.53 -0.2
4,740,107 + OH686_23395 0.53 -1.2
4,740,107 + OH686_23395 0.53 +0.7
4,740,107 + OH686_23395 0.53 -0.6
4,740,107 + OH686_23395 0.53 -1.7
4,740,107 + OH686_23395 0.53 +0.2
4,740,107 + OH686_23395 0.53 -0.4
4,740,107 + OH686_23395 0.53 +1.2
4,740,108 - OH686_23395 0.53 -0.5
4,740,108 - OH686_23395 0.53 -1.3
4,740,108 - OH686_23395 0.53 -1.1
4,740,108 - OH686_23395 0.53 +0.5
4,740,108 - OH686_23395 0.53 -2.4
4,740,108 - OH686_23395 0.53 -1.3
4,740,108 - OH686_23395 0.53 -0.3
4,740,108 - OH686_23395 0.53 -1.5
4,740,108 - OH686_23395 0.53 -0.8
4,740,108 - OH686_23395 0.53 +0.2
4,740,125 - OH686_23395 0.55 -1.7

Or see this region's nucleotide sequence